Wall clock time and date at job start Tue Mar 31 2020 00:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45201 * 109.46887 * 2 1 4 4 C 1.34638 * 116.99819 * 179.97438 * 3 2 1 5 5 O 1.21393 * 120.00286 * 0.02562 * 4 3 2 6 6 C 1.48359 * 119.99873 * 179.72706 * 4 3 2 7 7 C 1.39109 * 120.51208 * 180.27578 * 6 4 3 8 8 C 1.39871 * 118.18328 * 179.97438 * 7 6 4 9 9 N 1.38512 * 120.51282 * 180.02562 * 8 7 6 10 10 C 1.46495 * 119.99832 * 0.02562 * 9 8 7 11 11 C 1.52998 * 109.47120 * 179.97438 * 10 9 8 12 12 C 1.50703 * 109.47294 * 180.02562 * 11 10 9 13 13 H 1.07999 * 120.00120 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00107 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99773 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 119.99878 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47427 * 89.99756 * 16 14 12 18 18 H 1.48508 * 109.46990 * 209.99997 * 16 14 12 19 19 H 1.48494 * 109.47314 * 329.99443 * 16 14 12 20 20 N 1.32827 * 118.97792 * 0.02562 * 8 7 6 21 21 C 1.31856 * 120.91578 * 359.97438 * 20 8 7 22 22 C 1.50703 * 118.99000 * 180.02562 * 21 20 8 23 23 N 1.31544 * 122.01377 * 359.71837 * 21 20 8 24 24 H 1.09004 * 109.46566 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46911 * 299.99623 * 1 2 3 26 26 H 1.09005 * 109.47039 * 60.00183 * 1 2 3 27 27 H 1.08997 * 109.46911 * 240.00377 * 2 1 3 28 28 H 1.08997 * 109.47194 * 120.00096 * 2 1 3 29 29 H 1.08001 * 120.90805 * 359.97438 * 7 6 4 30 30 H 0.96999 * 119.99824 * 180.02562 * 9 8 7 31 31 H 1.09000 * 109.47722 * 300.00283 * 10 9 8 32 32 H 1.09007 * 109.47063 * 60.00555 * 10 9 8 33 33 H 1.08996 * 109.47495 * 300.00365 * 11 10 9 34 34 H 1.09000 * 109.47306 * 60.00527 * 11 10 9 35 35 H 0.97007 * 119.99863 * 180.02562 * 15 14 12 36 36 H 1.08996 * 109.46820 * 90.00577 * 22 21 20 37 37 H 1.09002 * 109.47013 * 209.99890 * 22 21 20 38 38 H 1.08990 * 109.47368 * 329.99981 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3488 1.5454 0.0005 5 8 4.0883 0.5828 0.0005 6 6 3.9158 2.9164 -0.0055 7 6 5.2932 3.1110 -0.0108 8 6 5.7748 4.4241 -0.0170 9 7 7.1373 4.6735 -0.0229 10 6 8.0862 3.5574 -0.0234 11 6 9.5155 4.1031 -0.0311 12 6 10.4916 2.9550 -0.0322 13 1 10.1289 1.9377 -0.0282 14 6 11.8479 3.2032 -0.0382 15 7 12.2896 4.4419 -0.0435 16 14 13.0578 1.7800 -0.0402 17 1 13.3727 1.3999 -1.4408 18 1 14.3051 2.1897 0.6539 19 1 12.4576 0.6190 0.6647 20 7 4.9055 5.4284 -0.0171 21 6 3.6068 5.2002 -0.0119 22 6 2.6593 6.3722 -0.0128 23 7 3.1130 3.9810 -0.0120 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 5.9721 2.2711 -0.0102 30 1 7.4631 5.5871 -0.0268 31 1 7.9335 2.9502 0.8689 32 1 7.9267 2.9452 -0.9111 33 1 9.6679 4.7100 -0.9235 34 1 9.6754 4.7155 0.8563 35 1 13.2438 4.6165 -0.0481 36 1 2.4274 6.6510 -1.0407 37 1 1.7405 6.0969 0.5050 38 1 3.1246 7.2160 0.4965 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882174761.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:01 Heat of formation + Delta-G solvation = -65.671635 kcal Electronic energy + Delta-G solvation = -20717.936437 eV Core-core repulsion = 17366.618538 eV Total energy + Delta-G solvation = -3351.317899 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.39655 -41.26896 -38.12028 -37.88980 -35.44418 -34.72719 -33.41723 -32.55337 -30.92613 -29.42534 -27.12210 -26.74774 -23.99245 -23.76208 -22.57766 -22.21933 -19.70770 -19.30771 -18.43915 -17.97721 -17.80278 -16.71607 -16.58215 -16.52848 -16.35203 -15.68224 -15.55095 -15.11811 -15.02621 -14.45196 -14.25052 -13.73277 -13.63099 -13.30311 -13.16445 -13.11706 -12.96481 -12.64956 -12.53799 -12.52571 -12.13147 -11.98459 -11.95554 -11.64947 -11.57641 -11.41859 -10.91861 -10.59769 -10.48653 -9.26959 -8.25962 -6.36897 -0.74946 0.06111 1.22951 1.24413 1.42044 1.42231 1.53434 1.89806 2.40891 2.68579 2.79468 3.09790 3.21573 3.50032 3.74532 4.00537 4.05173 4.11819 4.28718 4.33049 4.34501 4.40608 4.73612 4.77090 4.80367 4.83903 4.87979 4.93845 5.03716 5.24218 5.32113 5.39086 5.50254 5.52293 5.72632 6.00033 6.10372 6.38234 6.50473 6.78102 7.06862 7.33138 8.86160 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.018288 B = 0.003537 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.721558 B = 7913.333092 C = 9407.690840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.047 3.953 3 O -0.334 6.334 4 C 0.531 3.469 5 O -0.510 6.510 6 C 0.166 3.834 7 C -0.241 4.241 8 C 0.439 3.561 9 N -0.691 5.691 10 C 0.139 3.861 11 C 0.021 3.979 12 C -0.544 4.544 13 H 0.067 0.933 14 C 0.006 3.994 15 N -0.929 5.929 16 Si 0.965 3.035 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.263 1.263 20 N -0.577 5.577 21 C 0.351 3.649 22 C -0.078 4.078 23 N -0.533 5.533 24 H 0.105 0.895 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.155 0.845 30 H 0.412 0.588 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.006 0.994 34 H 0.006 0.994 35 H 0.265 0.735 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.437 -3.032 0.073 23.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.026 4.026 3 O -0.249 6.249 4 C 0.373 3.627 5 O -0.397 6.397 6 C 0.024 3.976 7 C -0.271 4.271 8 C 0.192 3.808 9 N -0.321 5.321 10 C 0.016 3.984 11 C -0.016 4.016 12 C -0.583 4.583 13 H 0.085 0.915 14 C -0.193 4.193 15 N -0.568 5.568 16 Si 0.790 3.210 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.187 1.187 20 N -0.303 5.303 21 C 0.083 3.917 22 C -0.136 4.136 23 N -0.256 5.256 24 H 0.123 0.877 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.172 0.828 30 H 0.249 0.751 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.024 0.976 34 H 0.024 0.976 35 H 0.074 0.926 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -23.574 -2.741 0.069 23.733 hybrid contribution 2.005 -0.997 -0.023 2.239 sum -21.569 -3.738 0.046 21.890 Atomic orbital electron populations 1.21824 0.89891 1.04557 1.03826 1.23521 0.97519 0.78370 1.03166 1.86666 1.21415 1.34271 1.82548 1.20646 0.81707 0.87739 0.72593 1.90854 1.61313 1.41687 1.45861 1.20081 0.89595 0.91486 0.96436 1.22156 0.96141 0.98186 1.10618 1.18625 0.86536 0.88730 0.86919 1.44940 1.00586 1.11187 1.75399 1.21598 0.88112 0.87628 1.01037 1.19113 0.89788 0.96375 0.96338 1.21461 0.91692 0.93647 1.51464 0.91493 1.25895 1.00605 0.98378 0.94450 1.70074 1.14955 1.20779 1.51013 0.85436 0.77915 0.79172 0.78495 1.19838 1.20865 1.18688 1.67854 1.04235 1.35062 1.23172 1.23805 0.88008 0.92766 0.87124 1.20731 0.96221 0.91291 1.05350 1.68319 1.39161 0.98690 1.19393 0.87690 0.91239 0.91254 0.90703 0.90689 0.82765 0.75069 0.91747 0.91750 0.97574 0.97556 0.92592 0.87831 0.87937 0.88522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 10.29 71.98 0.74 -0.88 16 2 C 0.05 0.85 6.19 71.98 0.45 1.29 16 3 O -0.33 -8.44 10.07 -55.47 -0.56 -9.00 16 4 C 0.53 15.84 7.97 70.52 0.56 16.41 16 5 O -0.51 -16.88 16.20 20.18 0.33 -16.55 16 6 C 0.17 5.19 6.78 41.82 0.28 5.48 16 7 C -0.24 -7.89 8.94 22.87 0.20 -7.69 16 8 C 0.44 14.64 7.71 133.28 1.03 15.67 16 9 N -0.69 -23.89 5.71 -344.53 -1.97 -25.86 16 10 C 0.14 5.39 4.87 86.38 0.42 5.81 16 11 C 0.02 1.04 5.09 29.85 0.15 1.19 16 12 C -0.54 -29.21 9.11 25.60 0.23 -28.98 16 13 H 0.07 3.43 7.74 -2.91 -0.02 3.40 16 14 C 0.01 0.30 5.46 84.65 0.46 0.76 16 15 N -0.93 -54.20 13.29 21.45 0.28 -53.92 16 16 Si 0.97 42.79 29.54 68.60 2.03 44.82 16 17 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 18 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 19 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 20 N -0.58 -17.91 10.35 -185.47 -1.92 -19.83 16 21 C 0.35 9.56 7.64 138.81 1.06 10.62 16 22 C -0.08 -1.32 10.31 71.24 0.73 -0.58 16 23 N -0.53 -15.61 10.14 -177.36 -1.80 -17.41 16 24 H 0.10 0.68 8.14 -2.38 -0.02 0.66 16 25 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 27 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.15 5.08 6.55 -2.91 -0.02 5.06 16 30 H 0.41 13.85 8.60 -92.71 -0.80 13.05 16 31 H 0.06 2.44 7.97 -2.39 -0.02 2.42 16 32 H 0.06 2.44 7.98 -2.38 -0.02 2.42 16 33 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 34 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 35 H 0.27 14.60 8.31 -92.70 -0.77 13.83 16 36 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -65.02 335.53 3.00 -62.02 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: 0.28 Total: 16.63 kcal Atomic # 6 Polarization: 12.77 SS G_CDS: 6.33 Total: 19.09 kcal Atomic # 7 Polarization: -111.61 SS G_CDS: -5.40 Total: -117.01 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -0.23 Total: -25.55 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -65.02 3.00 -62.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882174761.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.650 kcal (2) G-P(sol) polarization free energy of solvation -65.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds