Wall clock time and date at job start Tue Mar 31 2020 01:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35858 * 117.00239 * 2 1 4 4 N 1.30807 * 126.05607 * 0.19196 * 3 2 1 5 5 N 1.39921 * 108.88066 * 180.24107 * 4 3 2 6 6 C 1.46496 * 125.68841 * 179.73847 * 5 4 3 7 7 C 1.34165 * 108.62121 * 359.73903 * 5 4 3 8 8 C 1.38138 * 107.50879 * 359.97438 * 7 5 4 9 9 C 1.47246 * 126.44795 * 179.97438 * 8 7 5 10 10 O 1.21622 * 120.00218 * 185.18245 * 9 8 7 11 11 N 1.34775 * 119.99817 * 5.17383 * 9 8 7 12 12 C 1.46497 * 120.00089 * 184.84325 * 11 9 8 13 13 C 1.52994 * 109.47694 * 184.73983 * 12 11 9 14 14 C 1.50705 * 115.54910 * 297.99491 * 13 12 11 15 15 H 1.07994 * 120.00414 * 95.22068 * 14 13 12 16 16 C 1.37885 * 119.99414 * 275.22197 * 14 13 12 17 17 N 1.31509 * 120.00169 * 6.27812 * 16 14 13 18 18 Si 1.86805 * 119.99476 * 186.27349 * 16 14 13 19 19 H 1.48504 * 109.46593 * 180.02562 * 18 16 14 20 20 H 1.48495 * 109.47420 * 300.00057 * 18 16 14 21 21 H 1.48496 * 109.46913 * 60.00403 * 18 16 14 22 22 C 1.53001 * 117.50029 * 83.65487 * 13 12 11 23 23 C 1.52997 * 117.50305 * 152.32040 * 13 12 11 24 24 H 1.08995 * 109.47322 * 300.00086 * 1 2 3 25 25 H 1.09002 * 109.47184 * 60.00045 * 1 2 3 26 26 H 1.08999 * 109.47485 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46930 * 270.00342 * 6 5 4 28 28 H 1.08995 * 109.47525 * 30.00216 * 6 5 4 29 29 H 1.08995 * 109.47144 * 150.00589 * 6 5 4 30 30 H 1.07994 * 126.24704 * 180.02562 * 7 5 4 31 31 H 0.97004 * 120.00677 * 4.84832 * 11 9 8 32 32 H 1.09002 * 109.47120 * 64.73460 * 12 11 9 33 33 H 1.09002 * 109.47532 * 304.74279 * 12 11 9 34 34 H 0.97000 * 120.00353 * 355.22957 * 17 16 14 35 35 H 1.08993 * 117.50326 * 215.00265 * 22 13 12 36 36 H 1.09001 * 117.49923 * 0.03280 * 22 13 12 37 37 H 1.08997 * 117.50051 * 359.97438 * 23 13 12 38 38 H 1.08999 * 117.50072 * 144.97970 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0457 1.2105 0.0000 4 7 1.4531 2.3766 0.0035 5 7 2.4282 3.3801 -0.0034 6 6 2.1704 4.8222 -0.0077 7 6 3.6385 2.8013 -0.0056 8 6 3.4452 1.4335 0.0006 9 6 4.4955 0.4016 0.0003 10 8 4.1938 -0.7733 -0.0890 11 7 5.7913 0.7589 0.0988 12 6 6.8414 -0.2569 -0.0080 13 6 8.2037 0.3880 0.2546 14 6 8.6105 1.4660 -0.7168 15 1 8.4221 2.5032 -0.4826 16 6 9.2234 1.1278 -1.9048 17 7 9.3419 -0.1365 -2.2470 18 14 9.8853 2.4656 -3.0281 19 1 10.4923 1.8447 -4.2329 20 1 8.7743 3.3609 -3.4397 21 1 10.9148 3.2544 -2.3051 22 6 8.6396 0.5496 1.7123 23 6 9.3091 -0.5029 0.8249 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 2.1028 5.1761 -1.0364 28 1 1.2322 5.0251 0.5087 29 1 2.9843 5.3382 0.5014 30 1 4.5903 3.3116 -0.0103 31 1 6.0287 1.6887 0.2406 32 1 6.8301 -0.6873 -1.0094 33 1 6.6636 -1.0422 0.7268 34 1 9.0612 -0.8334 -1.6335 35 1 9.2207 1.4354 1.9686 36 1 7.9561 0.1959 2.4842 37 1 9.0657 -1.5484 1.0134 38 1 10.3305 -0.3096 0.4972 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883968507.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:23:35 Heat of formation + Delta-G solvation = 28.805385 kcal Electronic energy + Delta-G solvation = -21673.684460 eV Core-core repulsion = 18326.463392 eV Total energy + Delta-G solvation = -3347.221068 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.41860 -38.59503 -38.22341 -36.82259 -33.26781 -32.90564 -31.90461 -30.40861 -27.93515 -26.79664 -25.67185 -24.77009 -22.37985 -21.32590 -20.89580 -19.69376 -19.59057 -17.89190 -16.87081 -16.42130 -16.26573 -15.61632 -15.09743 -15.03210 -14.79925 -14.37241 -13.85842 -13.77758 -13.33876 -13.00697 -12.85287 -12.72761 -12.56923 -12.28210 -11.95276 -11.63171 -11.22870 -10.93444 -10.84101 -10.80681 -10.46863 -10.15998 -9.69718 -9.30857 -9.12756 -8.66050 -8.48258 -8.46665 -8.38179 -8.03851 -6.38679 -4.15143 1.54467 2.14646 2.38698 3.25704 3.38384 3.40080 3.59070 3.94770 4.01216 4.33814 4.46886 4.68978 4.91120 5.01397 5.10877 5.15767 5.20882 5.21999 5.29975 5.46081 5.48701 5.76079 5.79963 5.90824 6.18159 6.27863 6.46959 6.56436 6.70881 6.75894 6.88931 7.20560 7.22144 7.23164 7.35263 7.61970 8.17458 8.32046 8.39477 8.81999 9.00610 9.61528 11.00738 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.018012 B = 0.004834 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.163718 B = 5790.860024 C = 6483.333957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.266 6.266 3 C 0.313 3.687 4 N -0.358 5.358 5 N -0.353 5.353 6 C 0.102 3.898 7 C 0.123 3.877 8 C -0.282 4.282 9 C 0.583 3.417 10 O -0.548 6.548 11 N -0.701 5.701 12 C 0.162 3.838 13 C 0.005 3.995 14 C -0.576 4.576 15 H 0.052 0.948 16 C 0.030 3.970 17 N -0.899 5.899 18 Si 1.066 2.934 19 H -0.283 1.283 20 H -0.289 1.289 21 H -0.288 1.288 22 C -0.194 4.194 23 C -0.173 4.173 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.100 0.900 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.193 0.807 31 H 0.397 0.603 32 H 0.062 0.938 33 H 0.041 0.959 34 H 0.277 0.723 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.282 9.491 5.327 17.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.168 6.168 3 C 0.108 3.892 4 N -0.198 5.198 5 N -0.135 5.135 6 C -0.039 4.039 7 C -0.029 4.029 8 C -0.297 4.297 9 C 0.369 3.631 10 O -0.427 6.427 11 N -0.350 5.350 12 C 0.038 3.962 13 C 0.004 3.996 14 C -0.614 4.614 15 H 0.070 0.930 16 C -0.177 4.177 17 N -0.533 5.533 18 Si 0.894 3.106 19 H -0.208 1.208 20 H -0.215 1.215 21 H -0.215 1.215 22 C -0.231 4.231 23 C -0.211 4.211 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.118 0.882 27 H 0.097 0.903 28 H 0.109 0.891 29 H 0.112 0.888 30 H 0.209 0.791 31 H 0.231 0.769 32 H 0.080 0.920 33 H 0.060 0.940 34 H 0.088 0.912 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -13.824 9.264 3.764 17.062 hybrid contribution -0.041 0.002 1.544 1.544 sum -13.866 9.266 5.308 17.501 Atomic orbital electron populations 1.22997 0.78166 1.03591 1.01749 1.86535 1.21399 1.20525 1.88318 1.20413 0.90213 0.85108 0.93474 1.77228 1.13312 0.94616 1.34647 1.47616 1.03195 1.06330 1.56395 1.21969 1.04328 0.73746 1.03866 1.23160 0.91182 0.92291 0.96222 1.19885 0.91918 0.92805 1.25084 1.17090 0.81784 0.87287 0.76923 1.90757 1.82430 1.18276 1.51229 1.45652 1.04648 1.12154 1.72592 1.20977 0.86117 0.88797 1.00301 1.19341 0.90342 0.98097 0.91805 1.21151 1.43804 0.91730 1.04716 0.92953 1.25748 0.94394 1.00511 0.97080 1.70716 1.44937 1.00021 1.37636 0.83586 0.76400 0.74452 0.76120 1.20813 1.21543 1.21494 1.22894 1.04570 1.00882 0.94775 1.22744 0.98981 0.94099 1.05247 0.92667 0.92615 0.88170 0.90289 0.89090 0.88820 0.79063 0.76851 0.91973 0.94044 0.91161 0.90132 0.91371 0.91270 0.89606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.70 101.05 1.08 1.44 16 2 O -0.27 -4.62 10.00 -24.31 -0.24 -4.87 16 3 C 0.31 5.42 7.85 -16.66 -0.13 5.29 16 4 N -0.36 -5.35 11.90 30.79 0.37 -4.99 16 5 N -0.35 -4.24 3.97 -67.60 -0.27 -4.50 16 6 C 0.10 0.66 11.44 59.84 0.68 1.34 16 7 C 0.12 1.60 10.98 -16.57 -0.18 1.42 16 8 C -0.28 -4.92 6.13 -104.95 -0.64 -5.57 16 9 C 0.58 12.20 7.80 -12.60 -0.10 12.10 16 10 O -0.55 -13.52 16.43 0.24 0.00 -13.52 16 11 N -0.70 -14.18 5.43 -61.45 -0.33 -14.51 16 12 C 0.16 3.71 5.46 -4.05 -0.02 3.69 16 13 C 0.00 0.12 1.00 -155.66 -0.16 -0.04 16 14 C -0.58 -14.64 8.44 -34.43 -0.29 -14.93 16 15 H 0.05 1.29 7.82 -52.49 -0.41 0.88 16 16 C 0.03 0.79 5.39 -17.82 -0.10 0.69 16 17 N -0.90 -25.82 13.57 55.43 0.75 -25.07 16 18 Si 1.07 23.70 29.91 -169.99 -5.08 18.62 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.29 -6.11 7.11 56.52 0.40 -5.71 16 21 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 22 C -0.19 -4.00 9.95 -26.69 -0.27 -4.26 16 23 C -0.17 -3.85 8.68 -26.69 -0.23 -4.08 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.19 1.82 7.51 -52.49 -0.39 1.43 16 31 H 0.40 7.13 7.20 -40.82 -0.29 6.84 16 32 H 0.06 1.61 7.88 -51.93 -0.41 1.20 16 33 H 0.04 0.94 8.07 -51.93 -0.42 0.53 16 34 H 0.28 7.94 6.21 -40.82 -0.25 7.69 16 35 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 36 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 38 H 0.09 2.03 8.14 -51.93 -0.42 1.61 16 LS Contribution 332.46 15.07 5.01 5.01 Total: -1.00 -34.67 332.46 -5.35 -40.02 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -5.20 Total: 6.71 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: -0.35 Total: -2.90 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: 0.52 Total: -49.07 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -0.24 Total: -18.38 kcal Atomic # 14 Polarization: 23.70 SS G_CDS: -5.08 Total: 18.62 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.67 -5.35 -40.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883968507.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.824 kcal (2) G-P(sol) polarization free energy of solvation -34.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds