Wall clock time and date at job start Tue Mar 31 2020 01:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35858 * 117.00239 * 2 1 4 4 N 1.30807 * 126.05607 * 0.19196 * 3 2 1 5 5 N 1.39921 * 108.88066 * 180.24107 * 4 3 2 6 6 C 1.46496 * 125.68841 * 179.73847 * 5 4 3 7 7 C 1.34165 * 108.62121 * 359.73903 * 5 4 3 8 8 C 1.38138 * 107.50879 * 359.97438 * 7 5 4 9 9 C 1.47246 * 126.44795 * 179.97438 * 8 7 5 10 10 O 1.21622 * 120.00218 * 185.18245 * 9 8 7 11 11 N 1.34775 * 119.99817 * 5.17383 * 9 8 7 12 12 C 1.46497 * 120.00089 * 184.84325 * 11 9 8 13 13 C 1.52994 * 109.47694 * 184.73983 * 12 11 9 14 14 C 1.50705 * 115.54910 * 297.99491 * 13 12 11 15 15 H 1.07994 * 120.00414 * 95.22068 * 14 13 12 16 16 C 1.37885 * 119.99414 * 275.22197 * 14 13 12 17 17 N 1.31509 * 120.00169 * 6.27812 * 16 14 13 18 18 Si 1.86805 * 119.99476 * 186.27349 * 16 14 13 19 19 H 1.48504 * 109.46593 * 180.02562 * 18 16 14 20 20 H 1.48495 * 109.47420 * 300.00057 * 18 16 14 21 21 H 1.48496 * 109.46913 * 60.00403 * 18 16 14 22 22 C 1.53001 * 117.50029 * 83.65487 * 13 12 11 23 23 C 1.52997 * 117.50305 * 152.32040 * 13 12 11 24 24 H 1.08995 * 109.47322 * 300.00086 * 1 2 3 25 25 H 1.09002 * 109.47184 * 60.00045 * 1 2 3 26 26 H 1.08999 * 109.47485 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46930 * 270.00342 * 6 5 4 28 28 H 1.08995 * 109.47525 * 30.00216 * 6 5 4 29 29 H 1.08995 * 109.47144 * 150.00589 * 6 5 4 30 30 H 1.07994 * 126.24704 * 180.02562 * 7 5 4 31 31 H 0.97004 * 120.00677 * 4.84832 * 11 9 8 32 32 H 1.09002 * 109.47120 * 64.73460 * 12 11 9 33 33 H 1.09002 * 109.47532 * 304.74279 * 12 11 9 34 34 H 0.97000 * 120.00353 * 355.22957 * 17 16 14 35 35 H 1.08993 * 117.50326 * 215.00265 * 22 13 12 36 36 H 1.09001 * 117.49923 * 0.03280 * 22 13 12 37 37 H 1.08997 * 117.50051 * 359.97438 * 23 13 12 38 38 H 1.08999 * 117.50072 * 144.97970 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0457 1.2105 0.0000 4 7 1.4531 2.3766 0.0035 5 7 2.4282 3.3801 -0.0034 6 6 2.1704 4.8222 -0.0077 7 6 3.6385 2.8013 -0.0056 8 6 3.4452 1.4335 0.0006 9 6 4.4955 0.4016 0.0003 10 8 4.1938 -0.7733 -0.0890 11 7 5.7913 0.7589 0.0988 12 6 6.8414 -0.2569 -0.0080 13 6 8.2037 0.3880 0.2546 14 6 8.6105 1.4660 -0.7168 15 1 8.4221 2.5032 -0.4826 16 6 9.2234 1.1278 -1.9048 17 7 9.3419 -0.1365 -2.2470 18 14 9.8853 2.4656 -3.0281 19 1 10.4923 1.8447 -4.2329 20 1 8.7743 3.3609 -3.4397 21 1 10.9148 3.2544 -2.3051 22 6 8.6396 0.5496 1.7123 23 6 9.3091 -0.5029 0.8249 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 2.1028 5.1761 -1.0364 28 1 1.2322 5.0251 0.5087 29 1 2.9843 5.3382 0.5014 30 1 4.5903 3.3116 -0.0103 31 1 6.0287 1.6887 0.2406 32 1 6.8301 -0.6873 -1.0094 33 1 6.6636 -1.0422 0.7268 34 1 9.0612 -0.8334 -1.6335 35 1 9.2207 1.4354 1.9686 36 1 7.9561 0.1959 2.4842 37 1 9.0657 -1.5484 1.0134 38 1 10.3305 -0.3096 0.4972 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883968507.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:23:34 Heat of formation + Delta-G solvation = 2.309150 kcal Electronic energy + Delta-G solvation = -21674.833423 eV Core-core repulsion = 18326.463392 eV Total energy + Delta-G solvation = -3348.370031 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.53678 -40.25486 -39.35404 -38.60994 -34.98818 -33.89686 -33.81258 -31.62407 -28.83840 -28.23437 -27.05548 -26.55155 -23.66895 -23.02819 -21.98286 -21.49081 -21.08637 -19.29039 -18.38560 -17.88948 -17.36654 -16.93248 -16.50413 -16.12700 -15.97356 -15.85043 -15.55714 -15.42630 -14.79923 -14.60607 -14.24478 -13.96203 -13.66531 -13.47836 -13.37116 -12.87023 -12.77394 -12.55499 -12.19299 -12.16655 -11.97549 -11.91874 -11.48090 -11.00311 -10.50429 -10.40469 -10.26557 -10.24089 -9.93496 -9.48076 -8.46088 -6.22497 0.45673 1.09127 1.25273 1.61018 1.68090 1.85475 2.17476 2.44599 2.49150 2.65976 3.30211 3.32486 3.40379 3.78622 4.09795 4.23150 4.29285 4.31260 4.35182 4.40905 4.49010 4.49910 4.53394 4.59623 4.62990 4.70777 4.77330 4.87199 4.92631 5.10029 5.37400 5.48236 5.62737 5.83309 6.13620 6.19859 6.32272 6.48138 6.73951 6.83760 7.42414 7.62376 8.93465 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.018012 B = 0.004834 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.163718 B = 5790.860024 C = 6483.333957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.301 6.301 3 C 0.294 3.706 4 N -0.363 5.363 5 N -0.339 5.339 6 C 0.087 3.913 7 C 0.154 3.846 8 C -0.329 4.329 9 C 0.582 3.418 10 O -0.598 6.598 11 N -0.693 5.693 12 C 0.177 3.823 13 C -0.018 4.018 14 C -0.572 4.572 15 H 0.063 0.937 16 C -0.022 4.022 17 N -0.936 5.936 18 Si 1.110 2.890 19 H -0.298 1.298 20 H -0.268 1.268 21 H -0.270 1.270 22 C -0.161 4.161 23 C -0.181 4.181 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.120 0.880 27 H 0.096 0.904 28 H 0.101 0.899 29 H 0.129 0.871 30 H 0.231 0.769 31 H 0.410 0.590 32 H 0.021 0.979 33 H 0.037 0.963 34 H 0.264 0.736 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.828 13.013 6.186 19.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.204 6.204 3 C 0.090 3.910 4 N -0.204 5.204 5 N -0.119 5.119 6 C -0.051 4.051 7 C -0.001 4.001 8 C -0.345 4.345 9 C 0.371 3.629 10 O -0.481 6.481 11 N -0.342 5.342 12 C 0.052 3.948 13 C -0.018 4.018 14 C -0.609 4.609 15 H 0.081 0.919 16 C -0.222 4.222 17 N -0.572 5.572 18 Si 0.933 3.067 19 H -0.225 1.225 20 H -0.193 1.193 21 H -0.195 1.195 22 C -0.198 4.198 23 C -0.219 4.219 24 H 0.083 0.917 25 H 0.079 0.921 26 H 0.138 0.862 27 H 0.114 0.886 28 H 0.119 0.881 29 H 0.147 0.853 30 H 0.248 0.752 31 H 0.247 0.753 32 H 0.039 0.961 33 H 0.055 0.945 34 H 0.074 0.926 35 H 0.110 0.890 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.413 12.861 4.655 19.870 hybrid contribution 0.038 -0.996 1.320 1.654 sum -14.376 11.865 5.975 19.574 Atomic orbital electron populations 1.23247 0.75852 1.05237 1.02430 1.86468 1.23973 1.21516 1.88418 1.20644 0.90456 0.85608 0.94341 1.77204 1.14149 0.94451 1.34624 1.48175 1.02409 1.07778 1.53535 1.22540 1.06442 0.70400 1.05714 1.23579 0.92778 0.90702 0.93053 1.19731 0.91133 0.93957 1.29655 1.17596 0.82310 0.87472 0.75498 1.90714 1.83155 1.20657 1.53574 1.45471 1.04040 1.12176 1.72545 1.20598 0.87065 0.89423 0.97732 1.19346 0.90385 0.98496 0.93604 1.21473 1.42207 0.92639 1.04598 0.91901 1.27048 0.94640 1.01290 0.99184 1.70830 1.47477 1.00882 1.38029 0.83020 0.76832 0.72683 0.74165 1.22453 1.19284 1.19533 1.22902 1.03391 1.00156 0.93366 1.22689 0.97837 0.95065 1.06335 0.91726 0.92053 0.86162 0.88598 0.88058 0.85290 0.75233 0.75339 0.96093 0.94499 0.92593 0.89047 0.89355 0.90601 0.91392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 10.70 113.37 1.21 1.84 16 2 O -0.30 -10.74 10.00 -87.15 -0.87 -11.61 16 3 C 0.29 10.15 7.85 85.70 0.67 10.82 16 4 N -0.36 -10.28 11.90 -169.99 -2.02 -12.30 16 5 N -0.34 -6.98 3.97 -367.80 -1.46 -8.44 16 6 C 0.09 0.72 11.44 127.77 1.46 2.18 16 7 C 0.15 3.53 10.98 84.31 0.93 4.45 16 8 C -0.33 -11.32 6.13 -20.08 -0.12 -11.45 16 9 C 0.58 24.79 7.80 86.61 0.68 25.46 16 10 O -0.60 -30.91 16.43 0.70 0.01 -30.90 16 11 N -0.69 -27.86 5.43 -466.56 -2.54 -30.39 16 12 C 0.18 8.28 5.46 86.38 0.47 8.75 16 13 C -0.02 -0.81 1.00 -52.93 -0.05 -0.86 16 14 C -0.57 -28.38 8.44 25.60 0.22 -28.16 16 15 H 0.06 2.93 7.82 -2.91 -0.02 2.91 16 16 C -0.02 -1.14 5.39 84.66 0.46 -0.69 16 17 N -0.94 -55.02 13.57 21.45 0.29 -54.73 16 18 Si 1.11 46.78 29.91 68.60 2.05 48.83 16 19 H -0.30 -13.25 7.11 99.48 0.71 -12.54 16 20 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 21 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 22 C -0.16 -6.29 9.95 30.62 0.30 -5.99 16 23 C -0.18 -8.07 8.68 30.62 0.27 -7.80 16 24 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.06 1.33 8.14 -2.39 -0.02 1.32 16 26 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 27 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.13 0.24 8.14 -2.39 -0.02 0.23 16 30 H 0.23 3.27 7.51 -2.91 -0.02 3.25 16 31 H 0.41 13.98 7.20 -92.71 -0.67 13.31 16 32 H 0.02 1.14 7.88 -2.39 -0.02 1.12 16 33 H 0.04 1.73 8.07 -2.39 -0.02 1.71 16 34 H 0.26 15.74 6.21 -92.71 -0.58 15.16 16 35 H 0.09 3.39 8.14 -2.39 -0.02 3.37 16 36 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 37 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 38 H 0.07 3.25 8.14 -2.39 -0.02 3.23 16 Total: -1.00 -78.71 332.46 2.55 -76.16 By element: Atomic # 1 Polarization: 24.20 SS G_CDS: 0.60 Total: 24.80 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: 6.49 Total: -1.43 kcal Atomic # 7 Polarization: -100.13 SS G_CDS: -5.73 Total: -105.86 kcal Atomic # 8 Polarization: -41.64 SS G_CDS: -0.86 Total: -42.50 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.05 Total: 48.83 kcal Total: -78.71 2.55 -76.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883968507.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.471 kcal (2) G-P(sol) polarization free energy of solvation -78.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds