Wall clock time and date at job start Tue Mar 31 2020 01:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42908 * 113.99774 * 2 1 4 4 C 1.50700 * 109.46882 * 180.02562 * 3 2 1 5 5 N 1.30445 * 125.98221 * 270.03673 * 4 3 2 6 6 N 1.39929 * 108.91373 * 179.97438 * 5 4 3 7 7 C 1.46501 * 125.75362 * 180.25998 * 6 5 4 8 8 C 1.34293 * 108.50034 * 0.02562 * 6 5 4 9 9 C 1.38107 * 107.40005 * 359.97438 * 8 6 5 10 10 C 1.47352 * 126.42241 * 180.02562 * 9 8 6 11 11 O 1.21631 * 120.00250 * 173.39386 * 10 9 8 12 12 N 1.34773 * 120.00164 * 353.39810 * 10 9 8 13 13 C 1.36983 * 119.99944 * 4.24069 * 12 10 9 14 14 H 1.08003 * 119.99715 * 300.04992 * 13 12 10 15 15 C 1.38975 * 120.00160 * 120.04681 * 13 12 10 16 16 N 1.31407 * 119.99955 * 1.75661 * 15 13 12 17 17 Si 1.86803 * 120.00063 * 181.75318 * 15 13 12 18 18 H 1.48501 * 109.46816 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46779 * 119.99903 * 17 15 13 20 20 H 1.48496 * 109.47393 * 240.00090 * 17 15 13 21 21 C 1.46495 * 120.00274 * 184.23878 * 12 10 9 22 22 C 1.53002 * 117.50057 * 182.78449 * 21 12 10 23 23 C 1.53005 * 117.49946 * 114.12495 * 21 12 10 24 24 H 1.09001 * 109.47200 * 300.00159 * 1 2 3 25 25 H 1.08997 * 109.47673 * 60.00481 * 1 2 3 26 26 H 1.09006 * 109.46988 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.46892 * 59.99719 * 3 2 1 28 28 H 1.09001 * 109.46616 * 299.99689 * 3 2 1 29 29 H 1.08992 * 109.47231 * 269.69729 * 7 6 5 30 30 H 1.09003 * 109.46606 * 29.69768 * 7 6 5 31 31 H 1.08998 * 109.47211 * 149.69384 * 7 6 5 32 32 H 1.07990 * 126.29967 * 179.97438 * 8 6 5 33 33 H 0.97003 * 120.00108 * 185.00368 * 16 15 13 34 34 H 1.09000 * 115.55295 * 328.45841 * 21 12 10 35 35 H 1.08997 * 117.49832 * 0.02562 * 22 21 12 36 36 H 1.09000 * 117.49923 * 145.02084 * 22 21 12 37 37 H 1.08996 * 117.50254 * 214.97953 * 23 21 12 38 38 H 1.08997 * 117.49448 * 359.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5125 1.1866 -0.0006 5 7 4.2769 1.1252 1.0546 6 7 5.6101 1.0193 0.6433 7 6 6.7736 0.9208 1.5281 8 6 5.6431 1.0179 -0.6992 9 6 4.3399 1.1217 -1.1445 10 6 3.8955 1.1577 -2.5489 11 8 2.7083 1.1305 -2.8120 12 7 4.8044 1.2206 -3.5420 13 6 6.1418 1.1635 -3.2510 14 1 6.5876 1.9109 -2.6114 15 6 6.9248 0.1438 -3.7787 16 7 6.3896 -0.7456 -4.5845 17 14 8.7381 0.0376 -3.3427 18 1 9.0922 1.1494 -2.4241 19 1 9.0117 -1.2608 -2.6761 20 1 9.5518 0.1396 -4.5807 21 6 4.3623 1.3501 -4.9326 22 6 5.4394 1.3508 -6.0192 23 6 4.7074 2.6480 -5.6657 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.6885 1.8464 0.8899 28 1 1.6885 1.8464 -0.8900 29 1 7.1483 1.9204 1.7482 30 1 6.4834 0.4290 2.4565 31 1 7.5547 0.3397 1.0379 32 1 6.5262 0.9485 -1.3169 33 1 6.9170 -1.4982 -4.8951 34 1 3.4093 0.8768 -5.1689 35 1 6.4769 1.2545 -5.6995 36 1 5.1948 0.8783 -6.9706 37 1 3.9818 3.0282 -6.3846 38 1 5.2631 3.4055 -5.1132 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888556044.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:18:49 Heat of formation + Delta-G solvation = 27.920554 kcal Electronic energy + Delta-G solvation = -22613.653132 eV Core-core repulsion = 19266.393695 eV Total energy + Delta-G solvation = -3347.259437 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.25231 -40.11603 -38.70861 -37.69189 -35.07489 -34.39901 -33.28206 -30.96919 -29.78239 -27.43085 -27.09371 -26.00403 -23.80454 -22.93684 -22.17397 -21.21444 -20.60121 -19.06865 -17.50372 -17.46626 -17.05390 -16.95293 -16.54635 -16.24672 -16.17630 -15.89891 -15.39309 -14.86488 -14.68236 -14.31687 -13.87744 -13.63811 -13.44509 -13.20947 -13.15042 -13.02611 -12.78988 -12.52483 -12.28696 -12.10526 -11.95226 -11.82281 -11.35158 -11.01942 -10.73370 -10.50380 -10.31967 -10.27306 -9.50171 -8.91742 -8.19528 -6.23212 0.80802 1.08015 1.46288 1.50101 1.59174 1.61673 2.28783 2.70182 2.98130 3.00873 3.20777 3.49996 3.59091 3.98068 4.20139 4.29811 4.32655 4.43740 4.48217 4.49181 4.53931 4.54345 4.61316 4.70421 4.70765 4.83010 4.91453 4.93891 4.98047 5.18458 5.38079 5.42335 5.54144 5.66800 6.11895 6.23521 6.30752 6.46385 6.66665 7.12477 7.68005 8.14794 8.81804 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.014959 B = 0.007864 C = 0.005702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.308874 B = 3559.455904 C = 4909.627948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.412 6.412 3 C 0.155 3.845 4 C 0.095 3.905 5 N -0.309 5.309 6 N -0.369 5.369 7 C 0.087 3.913 8 C 0.112 3.888 9 C -0.282 4.282 10 C 0.551 3.449 11 O -0.628 6.628 12 N -0.426 5.426 13 C -0.363 4.363 14 H 0.096 0.904 15 C 0.022 3.978 16 N -0.875 5.875 17 Si 0.959 3.041 18 H -0.238 1.238 19 H -0.277 1.277 20 H -0.279 1.279 21 C 0.076 3.924 22 C -0.126 4.126 23 C -0.193 4.193 24 H 0.063 0.937 25 H 0.040 0.960 26 H 0.097 0.903 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.110 0.890 32 H 0.223 0.777 33 H 0.270 0.730 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.102 0.898 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.404 3.771 7.838 9.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.331 6.331 3 C 0.077 3.923 4 C -0.072 4.072 5 N -0.133 5.133 6 N -0.149 5.149 7 C -0.052 4.052 8 C -0.038 4.038 9 C -0.296 4.296 10 C 0.343 3.657 11 O -0.516 6.516 12 N -0.144 5.144 13 C -0.490 4.490 14 H 0.113 0.887 15 C -0.185 4.185 16 N -0.508 5.508 17 Si 0.781 3.219 18 H -0.160 1.160 19 H -0.202 1.202 20 H -0.205 1.205 21 C -0.029 4.029 22 C -0.164 4.164 23 C -0.232 4.232 24 H 0.082 0.918 25 H 0.059 0.941 26 H 0.116 0.884 27 H 0.098 0.902 28 H 0.085 0.915 29 H 0.117 0.883 30 H 0.119 0.881 31 H 0.129 0.871 32 H 0.238 0.762 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.114 0.886 36 H 0.102 0.898 37 H 0.121 0.879 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.167 3.434 8.904 9.786 hybrid contribution 0.441 -0.297 -1.166 1.281 sum 2.609 3.137 7.738 8.748 Atomic orbital electron populations 1.22913 0.78937 1.03825 1.00890 1.87870 1.21978 1.27630 1.95576 1.20525 0.84859 0.85392 1.01519 1.22142 0.96177 0.99094 0.89767 1.76803 0.88106 1.25819 1.22601 1.48867 1.06065 1.54278 1.05720 1.22363 0.83113 1.05293 0.94394 1.24964 1.00801 0.94159 0.83867 1.20254 0.93542 1.22047 0.93787 1.18012 0.84991 0.77559 0.85133 1.90519 1.18305 1.57570 1.85238 1.42655 1.05604 1.63756 1.02365 1.19520 0.83316 1.12233 1.33964 0.88737 1.26433 1.03462 0.94434 0.94148 1.70120 1.39082 1.11937 1.29649 0.85395 0.77870 0.79343 0.79276 1.16035 1.20234 1.20510 1.21205 0.97546 1.00520 0.83606 1.22797 0.98501 0.98022 0.97061 1.23381 1.04310 0.91782 1.03680 0.91811 0.94091 0.88431 0.90224 0.91501 0.88333 0.88091 0.87129 0.76169 0.92014 0.90461 0.88562 0.89841 0.87937 0.89651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.88 11.01 113.37 1.25 2.13 16 2 O -0.41 -16.82 10.69 -148.98 -1.59 -18.41 16 3 C 0.16 6.16 5.91 71.24 0.42 6.58 16 4 C 0.10 4.19 6.89 43.52 0.30 4.49 16 5 N -0.31 -12.29 12.50 -46.66 -0.58 -12.87 16 6 N -0.37 -12.75 3.98 -367.71 -1.46 -14.22 16 7 C 0.09 1.81 11.44 127.77 1.46 3.27 16 8 C 0.11 4.50 9.83 84.29 0.83 5.32 16 9 C -0.28 -13.42 6.04 -20.15 -0.12 -13.55 16 10 C 0.55 29.63 7.63 86.64 0.66 30.29 16 11 O -0.63 -36.24 14.78 -4.13 -0.06 -36.30 16 12 N -0.43 -21.97 2.70 -616.87 -1.67 -23.64 16 13 C -0.36 -17.12 5.39 84.07 0.45 -16.66 16 14 H 0.10 4.17 6.17 -2.91 -0.02 4.15 16 15 C 0.02 0.99 3.84 84.93 0.33 1.32 16 16 N -0.87 -44.37 11.10 21.67 0.24 -44.13 16 17 Si 0.96 34.35 29.09 68.60 2.00 36.35 16 18 H -0.24 -7.44 7.11 99.48 0.71 -6.73 16 19 H -0.28 -9.95 7.11 99.48 0.71 -9.24 16 20 H -0.28 -10.22 7.11 99.48 0.71 -9.51 16 21 C 0.08 3.75 5.61 44.99 0.25 4.01 16 22 C -0.13 -5.51 8.30 30.62 0.25 -5.25 16 23 C -0.19 -7.80 10.37 30.62 0.32 -7.48 16 24 H 0.06 1.46 8.14 -2.39 -0.02 1.45 16 25 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.10 2.46 8.14 -2.38 -0.02 2.44 16 27 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 28 H 0.07 2.85 6.70 -2.39 -0.02 2.84 16 29 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.22 8.47 4.21 -2.92 -0.01 8.46 16 33 H 0.27 13.01 8.32 -92.71 -0.77 12.24 16 34 H 0.08 4.09 7.76 -2.39 -0.02 4.07 16 35 H 0.10 4.49 5.46 -2.39 -0.01 4.47 16 36 H 0.08 3.39 8.14 -2.39 -0.02 3.37 16 37 H 0.10 3.57 8.14 -2.39 -0.02 3.55 16 38 H 0.08 3.43 8.14 -2.39 -0.02 3.41 16 Total: -1.00 -69.22 318.46 4.35 -64.87 By element: Atomic # 1 Polarization: 32.80 SS G_CDS: 1.08 Total: 33.88 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: 6.40 Total: 14.47 kcal Atomic # 7 Polarization: -91.38 SS G_CDS: -3.47 Total: -94.86 kcal Atomic # 8 Polarization: -53.06 SS G_CDS: -1.65 Total: -54.71 kcal Atomic # 14 Polarization: 34.35 SS G_CDS: 2.00 Total: 36.35 kcal Total: -69.22 4.35 -64.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888556044.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.791 kcal (2) G-P(sol) polarization free energy of solvation -69.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds