Wall clock time and date at job start Tue Mar 31 2020 01:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50706 * 119.99525 * 2 1 4 4 N 1.46505 * 109.47082 * 124.53512 * 3 2 1 5 5 C 1.46502 * 119.99861 * 94.66223 * 4 3 2 6 6 C 1.50701 * 109.46982 * 90.86349 * 5 4 3 7 7 H 1.07997 * 120.00152 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99808 * 179.97438 * 6 5 4 9 9 N 1.31522 * 119.99812 * 359.97438 * 8 6 5 10 10 Si 1.86791 * 119.99869 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47665 * 90.00080 * 10 8 6 12 12 H 1.48507 * 109.47311 * 209.99987 * 10 8 6 13 13 H 1.48503 * 109.47539 * 329.99595 * 10 8 6 14 14 C 1.34773 * 120.00294 * 274.66633 * 4 3 2 15 15 O 1.21711 * 119.99745 * 6.33050 * 14 4 3 16 16 C 1.46654 * 120.00160 * 186.33307 * 14 4 3 17 17 C 1.35143 * 126.37739 * 7.86990 * 16 14 4 18 18 N 1.37021 * 107.87756 * 179.87662 * 17 16 14 19 19 C 1.46497 * 125.65300 * 180.14346 * 18 17 16 20 20 C 1.34622 * 108.69196 * 0.38737 * 18 17 16 21 21 O 1.21726 * 125.72363 * 179.73899 * 20 18 17 22 22 N 1.34757 * 108.55140 * 359.76286 * 20 18 17 23 23 C 1.46498 * 126.18358 * 180.02562 * 22 20 18 24 24 H 1.08000 * 119.99744 * 185.03138 * 1 2 3 25 25 H 1.08004 * 120.00511 * 5.02853 * 1 2 3 26 26 H 1.07993 * 120.00391 * 179.97438 * 2 1 3 27 27 H 1.08998 * 109.46882 * 244.53205 * 3 2 1 28 28 H 1.08994 * 109.47401 * 4.53647 * 3 2 1 29 29 H 1.09004 * 109.47269 * 210.86586 * 5 4 3 30 30 H 1.09003 * 109.47319 * 330.86076 * 5 4 3 31 31 H 0.96999 * 119.99330 * 179.97438 * 9 8 6 32 32 H 1.08003 * 126.06296 * 0.02562 * 17 16 14 33 33 H 1.09000 * 109.46907 * 180.25427 * 19 18 17 34 34 H 1.08996 * 109.47574 * 300.26169 * 19 18 17 35 35 H 1.09006 * 109.46841 * 60.26010 * 19 18 17 36 36 H 1.08994 * 109.46854 * 269.99620 * 23 22 20 37 37 H 1.08994 * 109.47082 * 29.99667 * 23 22 20 38 38 H 1.09000 * 109.46641 * 149.99707 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9857 1.3367 1.1379 5 6 4.3807 0.9256 0.9615 6 6 5.2161 2.1261 0.5984 7 1 4.7542 3.0982 0.5084 8 6 6.5704 1.9837 0.3821 9 7 7.1331 0.8002 0.4932 10 14 7.6060 3.4719 -0.0672 11 1 8.1227 4.1077 1.1713 12 1 8.7464 3.0433 -0.9164 13 1 6.7723 4.4479 -0.8140 14 6 2.5508 1.7437 2.3468 15 8 1.3688 1.9748 2.5222 16 6 3.5018 1.9083 3.4510 17 6 4.8486 1.8340 3.3667 18 7 5.3609 2.0482 4.6193 19 6 6.7832 2.0558 4.9704 20 6 4.3404 2.2450 5.4750 21 8 4.4450 2.4587 6.6688 22 7 3.1837 2.1654 4.7883 23 6 1.8365 2.3206 5.3424 24 1 -0.5400 -0.9317 0.0820 25 1 -0.5401 0.9317 -0.0820 26 1 1.8500 -0.9352 0.0004 27 1 2.6277 1.3989 -0.9278 28 1 1.3579 2.1320 0.0813 29 1 4.7520 0.4920 1.8902 30 1 4.4433 0.1848 0.1643 31 1 8.0858 0.7000 0.3407 32 1 5.4199 1.6424 2.4704 33 1 6.8929 2.2470 6.0378 34 1 7.2226 1.0884 4.7274 35 1 7.2923 2.8379 4.4069 36 1 1.4621 1.3491 5.6648 37 1 1.8703 2.9983 6.1954 38 1 1.1747 2.7300 4.5791 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000908343957.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:27:18 Heat of formation + Delta-G solvation = 28.984186 kcal Electronic energy + Delta-G solvation = -22745.196723 eV Core-core repulsion = 19397.983408 eV Total energy + Delta-G solvation = -3347.213315 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.89059 -39.00387 -36.28860 -35.80776 -34.63156 -33.87891 -32.40280 -30.04941 -28.23357 -27.38327 -25.67760 -25.27816 -23.37256 -22.00225 -20.31317 -19.66263 -18.89929 -16.90708 -16.63672 -16.43385 -16.12626 -15.68213 -14.83533 -14.69028 -14.44380 -14.29439 -13.86271 -13.65737 -13.59139 -13.08121 -12.84830 -12.57707 -12.51183 -12.15900 -11.85719 -11.56375 -11.25525 -11.14475 -11.00812 -10.85413 -10.55731 -10.36612 -10.00465 -9.90992 -9.43052 -9.33367 -8.98171 -8.82700 -7.94719 -7.17319 -6.47280 -4.57082 2.11239 2.51106 2.72935 3.06816 3.16563 3.20424 3.32504 3.58356 3.92929 4.09813 4.33097 4.83662 5.14748 5.30509 5.40262 5.52643 5.56112 5.64135 5.75795 5.83987 5.88063 5.91349 6.03924 6.11774 6.27113 6.27777 6.46031 6.48976 6.89250 6.90625 6.97144 7.08479 7.29611 7.38945 7.49779 7.72381 7.79684 8.13981 8.54150 8.70525 8.88989 9.10424 10.55691 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.010683 B = 0.009987 C = 0.005634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2620.398500 B = 2802.956667 C = 4968.518317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.162 4.162 3 C 0.152 3.848 4 N -0.583 5.583 5 C 0.213 3.787 6 C -0.548 4.548 7 H 0.070 0.930 8 C 0.067 3.933 9 N -0.881 5.881 10 Si 0.896 3.104 11 H -0.276 1.276 12 H -0.282 1.282 13 H -0.270 1.270 14 C 0.596 3.404 15 O -0.569 6.569 16 C -0.071 4.071 17 C 0.068 3.932 18 N -0.529 5.529 19 C 0.097 3.903 20 C 0.641 3.359 21 O -0.588 6.588 22 N -0.515 5.515 23 C 0.105 3.895 24 H 0.091 0.909 25 H 0.095 0.905 26 H 0.106 0.894 27 H 0.090 0.910 28 H 0.075 0.925 29 H 0.052 0.948 30 H 0.045 0.955 31 H 0.272 0.728 32 H 0.258 0.742 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.059 0.941 37 H 0.073 0.927 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.489 -0.552 0.812 3.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.181 4.181 3 C 0.029 3.971 4 N -0.313 5.313 5 C 0.093 3.907 6 C -0.586 4.586 7 H 0.088 0.912 8 C -0.139 4.139 9 N -0.517 5.517 10 Si 0.722 3.278 11 H -0.201 1.201 12 H -0.208 1.208 13 H -0.194 1.194 14 C 0.385 3.615 15 O -0.451 6.451 16 C -0.176 4.176 17 C -0.059 4.059 18 N -0.245 5.245 19 C -0.045 4.045 20 C 0.344 3.656 21 O -0.469 6.469 22 N -0.236 5.236 23 C -0.036 4.036 24 H 0.110 0.890 25 H 0.113 0.887 26 H 0.124 0.876 27 H 0.108 0.892 28 H 0.094 0.906 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.272 0.728 33 H 0.105 0.895 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.829 -0.376 1.767 4.234 hybrid contribution 0.750 0.649 -0.332 1.046 sum -3.080 0.273 1.436 3.409 Atomic orbital electron populations 1.23707 0.95855 1.01363 1.01119 1.23361 0.96169 0.99245 0.99327 1.20378 0.92291 0.94877 0.89540 1.47805 1.12740 1.63458 1.07255 1.20090 0.75298 0.96098 0.99171 1.21563 0.92911 0.95373 1.48803 0.91174 1.25023 0.97859 0.96482 0.94492 1.69933 1.12561 1.22057 1.47170 0.86495 0.79830 0.82418 0.79013 1.20134 1.20759 1.19443 1.16652 0.86009 0.77077 0.81731 1.90683 1.16932 1.54264 1.83266 1.19555 0.93162 1.19201 0.85693 1.25477 0.93562 0.96588 0.90240 1.45159 1.07653 1.62745 1.08943 1.21773 0.76780 1.03470 1.02471 1.16237 0.80773 0.83377 0.85257 1.90943 1.84269 1.60619 1.11070 1.44990 1.06873 1.64868 1.06860 1.21724 0.80001 1.02007 0.99907 0.89040 0.88700 0.87557 0.89198 0.90624 0.93092 0.93735 0.91862 0.72754 0.89491 0.90380 0.90587 0.92277 0.90834 0.88372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.54 14.31 29.02 0.42 -2.12 16 2 C -0.16 -2.50 9.81 -36.02 -0.35 -2.85 16 3 C 0.15 2.59 5.75 -5.19 -0.03 2.56 16 4 N -0.58 -11.48 2.45 -177.98 -0.44 -11.92 16 5 C 0.21 4.47 4.63 -5.19 -0.02 4.45 16 6 C -0.55 -12.29 7.09 -34.44 -0.24 -12.53 16 7 H 0.07 1.63 7.81 -52.49 -0.41 1.22 16 8 C 0.07 1.51 4.94 -17.82 -0.09 1.43 16 9 N -0.88 -20.72 13.29 55.43 0.74 -19.98 16 10 Si 0.90 18.22 29.54 -169.99 -5.02 13.20 16 11 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 12 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 13 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 14 C 0.60 12.43 7.58 -12.87 -0.10 12.34 16 15 O -0.57 -12.32 14.54 5.18 0.08 -12.25 16 16 C -0.07 -1.46 6.71 -81.91 -0.55 -2.01 16 17 C 0.07 1.38 8.84 -16.33 -0.14 1.24 16 18 N -0.53 -10.16 3.12 -128.78 -0.40 -10.57 16 19 C 0.10 1.46 11.16 59.85 0.67 2.13 16 20 C 0.64 13.42 8.49 -87.07 -0.74 12.68 16 21 O -0.59 -13.34 17.35 5.17 0.09 -13.25 16 22 N -0.52 -10.36 3.21 -124.83 -0.40 -10.76 16 23 C 0.11 1.78 10.67 59.85 0.64 2.42 16 24 H 0.09 1.11 8.06 -52.49 -0.42 0.69 16 25 H 0.09 1.28 7.86 -52.48 -0.41 0.87 16 26 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 27 H 0.09 1.46 8.04 -51.93 -0.42 1.04 16 28 H 0.08 1.29 7.32 -51.93 -0.38 0.91 16 29 H 0.05 1.12 4.94 -51.93 -0.26 0.86 16 30 H 0.04 0.97 8.07 -51.93 -0.42 0.55 16 31 H 0.27 6.12 8.31 -40.82 -0.34 5.79 16 32 H 0.26 5.45 2.69 -52.48 -0.14 5.31 16 33 H 0.09 1.23 7.68 -51.93 -0.40 0.84 16 34 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 1.14 8.08 -51.93 -0.42 0.72 16 38 H 0.10 1.68 6.31 -51.93 -0.33 1.36 16 LS Contribution 322.45 15.07 4.86 4.86 Total: -1.00 -27.65 322.45 -5.88 -33.53 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -4.83 Total: 7.40 kcal Atomic # 6 Polarization: 20.28 SS G_CDS: -0.55 Total: 19.73 kcal Atomic # 7 Polarization: -52.72 SS G_CDS: -0.50 Total: -53.22 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: 0.16 Total: -25.49 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -5.02 Total: 13.20 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -27.65 -5.88 -33.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908343957.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.515 kcal (2) G-P(sol) polarization free energy of solvation -27.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds