Wall clock time and date at job start Tue Mar 31 2020 01:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50706 * 119.99525 * 2 1 4 4 N 1.46505 * 109.47082 * 124.53512 * 3 2 1 5 5 C 1.46502 * 119.99861 * 94.66223 * 4 3 2 6 6 C 1.50701 * 109.46982 * 90.86349 * 5 4 3 7 7 H 1.07997 * 120.00152 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99808 * 179.97438 * 6 5 4 9 9 N 1.31522 * 119.99812 * 359.97438 * 8 6 5 10 10 Si 1.86791 * 119.99869 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47665 * 90.00080 * 10 8 6 12 12 H 1.48507 * 109.47311 * 209.99987 * 10 8 6 13 13 H 1.48503 * 109.47539 * 329.99595 * 10 8 6 14 14 C 1.34773 * 120.00294 * 274.66633 * 4 3 2 15 15 O 1.21711 * 119.99745 * 6.33050 * 14 4 3 16 16 C 1.46654 * 120.00160 * 186.33307 * 14 4 3 17 17 C 1.35143 * 126.37739 * 7.86990 * 16 14 4 18 18 N 1.37021 * 107.87756 * 179.87662 * 17 16 14 19 19 C 1.46497 * 125.65300 * 180.14346 * 18 17 16 20 20 C 1.34622 * 108.69196 * 0.38737 * 18 17 16 21 21 O 1.21726 * 125.72363 * 179.73899 * 20 18 17 22 22 N 1.34757 * 108.55140 * 359.76286 * 20 18 17 23 23 C 1.46498 * 126.18358 * 180.02562 * 22 20 18 24 24 H 1.08000 * 119.99744 * 185.03138 * 1 2 3 25 25 H 1.08004 * 120.00511 * 5.02853 * 1 2 3 26 26 H 1.07993 * 120.00391 * 179.97438 * 2 1 3 27 27 H 1.08998 * 109.46882 * 244.53205 * 3 2 1 28 28 H 1.08994 * 109.47401 * 4.53647 * 3 2 1 29 29 H 1.09004 * 109.47269 * 210.86586 * 5 4 3 30 30 H 1.09003 * 109.47319 * 330.86076 * 5 4 3 31 31 H 0.96999 * 119.99330 * 179.97438 * 9 8 6 32 32 H 1.08003 * 126.06296 * 0.02562 * 17 16 14 33 33 H 1.09000 * 109.46907 * 180.25427 * 19 18 17 34 34 H 1.08996 * 109.47574 * 300.26169 * 19 18 17 35 35 H 1.09006 * 109.46841 * 60.26010 * 19 18 17 36 36 H 1.08994 * 109.46854 * 269.99620 * 23 22 20 37 37 H 1.08994 * 109.47082 * 29.99667 * 23 22 20 38 38 H 1.09000 * 109.46641 * 149.99707 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9857 1.3367 1.1379 5 6 4.3807 0.9256 0.9615 6 6 5.2161 2.1261 0.5984 7 1 4.7542 3.0982 0.5084 8 6 6.5704 1.9837 0.3821 9 7 7.1331 0.8002 0.4932 10 14 7.6060 3.4719 -0.0672 11 1 8.1227 4.1077 1.1713 12 1 8.7464 3.0433 -0.9164 13 1 6.7723 4.4479 -0.8140 14 6 2.5508 1.7437 2.3468 15 8 1.3688 1.9748 2.5222 16 6 3.5018 1.9083 3.4510 17 6 4.8486 1.8340 3.3667 18 7 5.3609 2.0482 4.6193 19 6 6.7832 2.0558 4.9704 20 6 4.3404 2.2450 5.4750 21 8 4.4450 2.4587 6.6688 22 7 3.1837 2.1654 4.7883 23 6 1.8365 2.3206 5.3424 24 1 -0.5400 -0.9317 0.0820 25 1 -0.5401 0.9317 -0.0820 26 1 1.8500 -0.9352 0.0004 27 1 2.6277 1.3989 -0.9278 28 1 1.3579 2.1320 0.0813 29 1 4.7520 0.4920 1.8902 30 1 4.4433 0.1848 0.1643 31 1 8.0858 0.7000 0.3407 32 1 5.4199 1.6424 2.4704 33 1 6.8929 2.2470 6.0378 34 1 7.2226 1.0884 4.7274 35 1 7.2923 2.8379 4.4069 36 1 1.4621 1.3491 5.6648 37 1 1.8703 2.9983 6.1954 38 1 1.1747 2.7300 4.5791 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000908343957.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:27:17 Heat of formation + Delta-G solvation = 14.344425 kcal Electronic energy + Delta-G solvation = -22745.831550 eV Core-core repulsion = 19397.983408 eV Total energy + Delta-G solvation = -3347.848143 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.46018 -40.59477 -37.93361 -37.37114 -36.13089 -35.36091 -33.96961 -31.47815 -29.76800 -28.98458 -27.10440 -26.66910 -25.08128 -23.55708 -21.83579 -21.00239 -20.35889 -18.62236 -18.23260 -17.99692 -17.69012 -17.22365 -16.47205 -16.18089 -15.95292 -15.84593 -15.22893 -15.17666 -14.98101 -14.62407 -14.25985 -14.18140 -13.93012 -13.42493 -13.21478 -13.08577 -12.84193 -12.70511 -12.51524 -12.27025 -12.14297 -12.00013 -11.68828 -11.56988 -10.94932 -10.83165 -10.60250 -10.20808 -9.54746 -8.77178 -8.22179 -6.36734 0.50256 1.20130 1.36958 1.45521 1.52406 1.58673 1.71995 2.08427 2.30245 2.42955 2.80469 3.07536 3.68722 3.93019 4.11971 4.16501 4.29882 4.38577 4.43588 4.48240 4.59495 4.68859 4.69251 4.75305 4.83728 4.85901 4.98812 5.08541 5.22262 5.39815 5.65702 5.74098 5.75704 5.81366 5.92890 5.98512 6.22404 6.49832 6.78642 7.11019 7.25638 7.35498 8.80327 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.010683 B = 0.009987 C = 0.005634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2620.398500 B = 2802.956667 C = 4968.518317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.183 4.183 3 C 0.149 3.851 4 N -0.582 5.582 5 C 0.226 3.774 6 C -0.550 4.550 7 H 0.059 0.941 8 C 0.040 3.960 9 N -0.900 5.900 10 Si 0.942 3.058 11 H -0.270 1.270 12 H -0.282 1.282 13 H -0.276 1.276 14 C 0.592 3.408 15 O -0.580 6.580 16 C -0.083 4.083 17 C 0.071 3.929 18 N -0.526 5.526 19 C 0.088 3.912 20 C 0.631 3.369 21 O -0.610 6.610 22 N -0.517 5.517 23 C 0.103 3.897 24 H 0.113 0.887 25 H 0.099 0.901 26 H 0.108 0.892 27 H 0.094 0.906 28 H 0.074 0.926 29 H 0.045 0.955 30 H 0.036 0.964 31 H 0.274 0.726 32 H 0.251 0.749 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.580 -0.511 0.664 3.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.202 4.202 3 C 0.027 3.973 4 N -0.310 5.310 5 C 0.106 3.894 6 C -0.588 4.588 7 H 0.077 0.923 8 C -0.163 4.163 9 N -0.538 5.538 10 Si 0.768 3.232 11 H -0.195 1.195 12 H -0.207 1.207 13 H -0.201 1.201 14 C 0.381 3.619 15 O -0.464 6.464 16 C -0.189 4.189 17 C -0.058 4.058 18 N -0.241 5.241 19 C -0.052 4.052 20 C 0.333 3.667 21 O -0.493 6.493 22 N -0.237 5.237 23 C -0.038 4.038 24 H 0.131 0.869 25 H 0.117 0.883 26 H 0.126 0.874 27 H 0.112 0.888 28 H 0.093 0.907 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.084 0.916 32 H 0.266 0.734 33 H 0.114 0.886 34 H 0.112 0.888 35 H 0.106 0.894 36 H 0.091 0.909 37 H 0.104 0.896 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.922 -0.339 1.604 4.251 hybrid contribution 0.730 0.621 -0.318 1.010 sum -3.192 0.282 1.286 3.453 Atomic orbital electron populations 1.23933 0.95331 1.02584 0.98354 1.23247 0.96725 0.98346 1.01845 1.20511 0.92060 0.95969 0.88715 1.47846 1.12649 1.62871 1.07673 1.19843 0.75870 0.95366 0.98344 1.21574 0.93243 0.95188 1.48837 0.92275 1.25456 0.98473 0.98034 0.94365 1.69983 1.12888 1.23145 1.47738 0.85782 0.78533 0.80135 0.78782 1.19532 1.20739 1.20066 1.16733 0.85947 0.77168 0.82038 1.90664 1.17245 1.54989 1.83492 1.19674 0.93493 1.19652 0.86047 1.25286 0.93494 0.96585 0.90411 1.45385 1.08853 1.61653 1.08188 1.22081 0.74825 1.04927 1.03343 1.16377 0.81257 0.83803 0.85225 1.90916 1.84644 1.61877 1.11850 1.45224 1.07740 1.64121 1.06608 1.21881 0.78678 1.03119 1.00112 0.86892 0.88316 0.87425 0.88801 0.90749 0.93750 0.94631 0.91643 0.73438 0.88565 0.88786 0.89355 0.90949 0.89575 0.88670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.22 14.31 67.79 0.97 -3.25 16 2 C -0.18 -5.41 9.81 25.65 0.25 -5.16 16 3 C 0.15 4.99 5.75 85.63 0.49 5.48 16 4 N -0.58 -22.68 2.45 -835.21 -2.05 -24.73 16 5 C 0.23 9.45 4.63 85.63 0.40 9.85 16 6 C -0.55 -24.42 7.09 25.60 0.18 -24.24 16 7 H 0.06 2.74 7.81 -2.91 -0.02 2.71 16 8 C 0.04 1.79 4.94 84.65 0.42 2.21 16 9 N -0.90 -41.64 13.29 21.45 0.28 -41.35 16 10 Si 0.94 36.44 29.54 68.60 2.03 38.47 16 11 H -0.27 -10.16 7.11 99.48 0.71 -9.46 16 12 H -0.28 -10.86 7.11 99.48 0.71 -10.16 16 13 H -0.28 -10.88 7.11 99.48 0.71 -10.17 16 14 C 0.59 24.40 7.58 86.44 0.65 25.05 16 15 O -0.58 -24.70 14.54 -4.38 -0.06 -24.76 16 16 C -0.08 -3.38 6.71 39.35 0.26 -3.11 16 17 C 0.07 2.81 8.84 83.17 0.74 3.55 16 18 N -0.53 -19.69 3.12 -679.65 -2.12 -21.81 16 19 C 0.09 2.54 11.16 127.77 1.43 3.96 16 20 C 0.63 25.90 8.49 179.11 1.52 27.42 16 21 O -0.61 -27.15 17.35 -4.43 -0.08 -27.23 16 22 N -0.52 -20.39 3.21 -667.07 -2.14 -22.53 16 23 C 0.10 3.37 10.67 127.77 1.36 4.73 16 24 H 0.11 2.42 8.06 -2.91 -0.02 2.39 16 25 H 0.10 2.46 7.86 -2.91 -0.02 2.44 16 26 H 0.11 3.14 8.06 -2.91 -0.02 3.12 16 27 H 0.09 3.00 8.04 -2.39 -0.02 2.98 16 28 H 0.07 2.49 7.32 -2.39 -0.02 2.47 16 29 H 0.05 1.94 4.94 -2.38 -0.01 1.93 16 30 H 0.04 1.55 8.07 -2.39 -0.02 1.53 16 31 H 0.27 12.10 8.31 -92.71 -0.77 11.33 16 32 H 0.25 10.49 2.69 -2.91 -0.01 10.48 16 33 H 0.10 2.59 7.68 -2.39 -0.02 2.57 16 34 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.09 2.32 8.14 -2.38 -0.02 2.30 16 36 H 0.07 2.16 8.14 -2.39 -0.02 2.15 16 37 H 0.09 2.58 8.08 -2.39 -0.02 2.56 16 38 H 0.09 3.18 6.31 -2.39 -0.02 3.17 16 Total: -1.00 -56.32 322.45 5.60 -50.71 By element: Atomic # 1 Polarization: 25.65 SS G_CDS: 1.07 Total: 26.72 kcal Atomic # 6 Polarization: 37.83 SS G_CDS: 8.67 Total: 46.51 kcal Atomic # 7 Polarization: -104.40 SS G_CDS: -6.03 Total: -110.43 kcal Atomic # 8 Polarization: -51.84 SS G_CDS: -0.14 Total: -51.98 kcal Atomic # 14 Polarization: 36.44 SS G_CDS: 2.03 Total: 38.47 kcal Total: -56.32 5.60 -50.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908343957.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.057 kcal (2) G-P(sol) polarization free energy of solvation -56.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds