Wall clock time and date at job start Tue Mar 31 2020 01:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46499 * 119.99767 * 2 1 4 4 C 1.50694 * 109.47250 * 270.27346 * 3 2 1 5 5 O 1.20827 * 120.00294 * 0.02562 * 4 3 2 6 6 O 1.34238 * 120.00199 * 180.02562 * 4 3 2 7 7 C 1.45202 * 116.99973 * 179.97438 * 6 4 3 8 8 C 1.53000 * 109.46977 * 180.02562 * 7 6 4 9 9 C 1.52999 * 109.46881 * 180.02562 * 8 7 6 10 10 C 1.50704 * 109.46602 * 179.97438 * 9 8 7 11 11 H 1.07999 * 120.00217 * 0.02562 * 10 9 8 12 12 C 1.37885 * 119.99746 * 179.97438 * 10 9 8 13 13 N 1.31506 * 120.00106 * 180.02562 * 12 10 9 14 14 Si 1.86804 * 119.99823 * 0.02562 * 12 10 9 15 15 H 1.48494 * 109.47101 * 89.99794 * 14 12 10 16 16 H 1.48500 * 109.46617 * 210.00090 * 14 12 10 17 17 H 1.48501 * 109.47073 * 329.99502 * 14 12 10 18 18 C 1.38405 * 120.00241 * 180.27297 * 2 1 3 19 19 N 1.32492 * 119.21922 * 179.45986 * 18 2 1 20 20 C 1.32277 * 120.74235 * 179.71986 * 19 18 2 21 21 C 1.38606 * 119.19366 * 0.54099 * 20 19 18 22 22 C 1.38608 * 118.55898 * 359.73120 * 21 20 19 23 23 N 1.32273 * 119.19912 * 0.02562 * 22 21 20 24 24 H 1.09000 * 109.47295 * 269.72600 * 1 2 3 25 25 H 1.09002 * 109.47489 * 29.72706 * 1 2 3 26 26 H 1.08996 * 109.47047 * 149.72418 * 1 2 3 27 27 H 1.09003 * 109.47296 * 30.27471 * 3 2 1 28 28 H 1.09004 * 109.47373 * 150.27162 * 3 2 1 29 29 H 1.09000 * 109.47234 * 300.00340 * 7 6 4 30 30 H 1.09010 * 109.46809 * 60.00397 * 7 6 4 31 31 H 1.09001 * 109.46811 * 299.99994 * 8 7 6 32 32 H 1.08997 * 109.47175 * 60.00099 * 8 7 6 33 33 H 1.09001 * 109.47016 * 299.99406 * 9 8 7 34 34 H 1.08997 * 109.47512 * 59.99844 * 9 8 7 35 35 H 0.96998 * 120.00234 * 180.02562 * 13 12 10 36 36 H 1.07994 * 120.40211 * 180.25008 * 20 19 18 37 37 H 1.08001 * 120.72235 * 179.75269 * 21 20 19 38 38 H 1.08000 * 120.40088 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4427 1.7072 -1.4207 5 8 2.0460 1.0297 -2.3392 6 8 3.1020 2.8505 -1.6660 7 6 3.3025 3.2101 -3.0585 8 6 4.0671 4.5329 -3.1385 9 6 4.2778 4.9121 -4.6057 10 6 5.0304 6.2154 -4.6845 11 1 5.3289 6.7222 -3.7788 12 6 5.3388 6.7602 -5.9131 13 7 5.9960 7.8972 -5.9819 14 14 4.8231 5.8831 -7.4797 15 1 3.4745 6.3515 -7.8882 16 1 5.7989 6.1821 -8.5584 17 1 4.7862 4.4184 -7.2377 18 6 2.1571 -1.1986 -0.0057 19 7 3.4818 -1.1804 -0.0165 20 6 4.1735 -2.3080 -0.0167 21 6 3.4956 -3.5170 -0.0168 22 6 2.1097 -3.4996 -0.0110 23 7 1.4790 -2.3369 -0.0061 24 1 -0.3634 -0.0049 1.0276 25 1 -0.3634 0.8924 -0.5096 26 1 -0.3633 -0.8875 -0.5181 27 1 1.6105 2.0272 0.5181 28 1 3.1520 1.1373 0.5096 29 1 3.8762 2.4285 -3.5566 30 1 2.3349 3.3190 -3.5485 31 1 3.4937 5.3146 -2.6403 32 1 5.0346 4.4236 -2.6485 33 1 4.8511 4.1304 -5.1043 34 1 3.3102 5.0215 -5.0954 35 1 6.2126 8.2807 -6.8461 36 1 5.2532 -2.2867 -0.0214 37 1 4.0356 -4.4523 -0.0209 38 1 1.5515 -4.4241 -0.0105 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914932702.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:30 Heat of formation + Delta-G solvation = -25.207098 kcal Electronic energy + Delta-G solvation = -20786.122920 eV Core-core repulsion = 17436.559695 eV Total energy + Delta-G solvation = -3349.563225 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.22590 -40.21161 -37.30971 -36.06866 -34.07219 -33.91794 -31.90111 -31.51451 -29.51100 -27.52042 -26.30517 -24.57391 -23.38612 -22.41343 -20.82334 -20.20399 -18.14194 -17.76778 -17.66740 -16.87907 -16.45692 -16.16474 -15.82579 -15.21252 -14.87882 -14.73197 -14.19403 -14.16974 -13.70142 -13.62890 -12.90281 -12.74564 -12.70771 -12.38123 -12.01387 -11.90726 -11.21786 -11.06225 -11.04487 -10.96289 -10.86106 -10.44662 -10.40643 -9.99115 -9.79985 -9.72438 -9.33941 -9.24879 -8.56947 -8.27591 -6.07195 -4.06089 0.93106 0.94501 2.15884 2.29781 2.95189 3.29654 3.37244 3.41095 3.70171 3.92881 4.24860 4.42894 4.46869 4.77576 4.82551 4.94086 4.97948 5.03116 5.13042 5.26181 5.31172 5.46730 5.51018 5.52499 5.58213 5.87172 5.99966 6.30363 6.39719 6.41712 6.59201 6.68385 6.81648 7.10440 7.21556 7.32742 7.72478 7.88603 8.01943 8.49759 8.97216 9.54452 11.05996 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.029879 B = 0.002906 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.892431 B = 9633.085788 C = 9906.713150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.573 5.573 3 C 0.141 3.859 4 C 0.439 3.561 5 O -0.506 6.506 6 O -0.356 6.356 7 C 0.068 3.932 8 C -0.101 4.101 9 C -0.011 4.011 10 C -0.521 4.521 11 H 0.074 0.926 12 C 0.067 3.933 13 N -0.902 5.902 14 Si 0.879 3.121 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.266 1.266 18 C 0.570 3.430 19 N -0.568 5.568 20 C 0.194 3.806 21 C -0.294 4.294 22 C 0.191 3.809 23 N -0.566 5.566 24 H 0.057 0.943 25 H 0.070 0.930 26 H 0.083 0.917 27 H 0.123 0.877 28 H 0.129 0.871 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.018 0.982 34 H 0.014 0.986 35 H 0.264 0.736 36 H 0.168 0.832 37 H 0.144 0.856 38 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.009 -22.330 15.903 28.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.289 5.289 3 C 0.015 3.985 4 C 0.280 3.720 5 O -0.394 6.394 6 O -0.272 6.272 7 C -0.005 4.005 8 C -0.139 4.139 9 C -0.048 4.048 10 C -0.559 4.559 11 H 0.092 0.908 12 C -0.134 4.134 13 N -0.540 5.540 14 Si 0.706 3.294 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.190 1.190 18 C 0.215 3.785 19 N -0.290 5.290 20 C 0.027 3.973 21 C -0.319 4.319 22 C 0.023 3.977 23 N -0.287 5.287 24 H 0.076 0.924 25 H 0.088 0.912 26 H 0.101 0.899 27 H 0.140 0.860 28 H 0.147 0.853 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.037 0.963 34 H 0.032 0.968 35 H 0.074 0.926 36 H 0.185 0.815 37 H 0.161 0.839 38 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -9.665 -21.319 15.464 28.054 hybrid contribution 0.288 -1.221 -1.252 1.773 sum -9.377 -22.540 14.211 28.248 Atomic orbital electron populations 1.21686 0.76627 1.03794 1.01671 1.45558 1.05942 1.00734 1.76627 1.20892 1.01027 0.85425 0.91171 1.24326 0.75148 0.79312 0.93262 1.90657 1.48048 1.53983 1.46690 1.86492 1.68610 1.39145 1.32936 1.23469 1.00939 0.98959 0.77170 1.21556 0.99409 0.92383 1.00502 1.19522 0.96811 0.97618 0.90864 1.21059 1.35710 1.04723 0.94430 0.90756 1.25013 0.94574 0.94704 0.99102 1.69902 1.40240 1.18657 1.25229 0.86788 0.78591 0.80811 0.83184 1.20209 1.21259 1.19015 1.19151 0.85294 0.86166 0.87866 1.67882 1.06913 1.32466 1.21762 1.22958 1.00451 0.86710 0.87220 1.22545 0.96739 1.00697 1.11945 1.22931 0.91979 0.95134 0.87665 1.67867 1.41036 0.97905 1.21938 0.92426 0.91174 0.89875 0.85959 0.85286 0.91721 0.91705 0.91519 0.91456 0.96328 0.96770 0.92640 0.81515 0.83858 0.81626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.96 10.44 59.85 0.62 1.58 16 2 N -0.57 -6.65 2.46 -185.32 -0.46 -7.11 16 3 C 0.14 1.51 6.00 -5.20 -0.03 1.48 16 4 C 0.44 6.62 8.03 36.00 0.29 6.91 16 5 O -0.51 -9.27 16.18 -18.75 -0.30 -9.58 16 6 O -0.36 -5.79 10.22 -39.28 -0.40 -6.19 16 7 C 0.07 1.22 5.47 37.16 0.20 1.42 16 8 C -0.10 -2.03 5.53 -26.73 -0.15 -2.18 16 9 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 10 C -0.52 -14.93 9.66 -34.44 -0.33 -15.26 16 11 H 0.07 2.27 7.99 -52.49 -0.42 1.85 16 12 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 13 N -0.90 -27.88 13.96 55.43 0.77 -27.10 16 14 Si 0.88 21.88 27.47 -169.99 -4.67 17.22 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 16 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 17 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 18 C 0.57 7.31 8.17 -322.80 -2.64 4.67 16 19 N -0.57 -7.13 9.12 -13.93 -0.13 -7.25 16 20 C 0.19 1.82 11.30 -17.22 -0.19 1.62 16 21 C -0.29 -2.24 10.16 -39.31 -0.40 -2.63 16 22 C 0.19 1.64 11.30 -17.23 -0.19 1.44 16 23 N -0.57 -6.61 9.12 -13.93 -0.13 -6.73 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.07 0.59 8.07 -51.93 -0.42 0.17 16 26 H 0.08 0.83 7.34 -51.93 -0.38 0.45 16 27 H 0.12 0.89 8.07 -51.93 -0.42 0.47 16 28 H 0.13 1.32 7.34 -51.93 -0.38 0.94 16 29 H 0.06 1.18 8.13 -51.93 -0.42 0.76 16 30 H 0.06 1.15 8.13 -51.92 -0.42 0.73 16 31 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 34 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 35 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 36 H 0.17 1.04 8.06 -52.49 -0.42 0.62 16 37 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 38 H 0.17 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 331.60 15.07 5.00 5.00 Total: -1.00 -35.82 331.60 -8.68 -44.50 By element: Atomic # 1 Polarization: 2.03 SS G_CDS: -5.33 Total: -3.31 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -3.03 Total: 0.56 kcal Atomic # 7 Polarization: -48.26 SS G_CDS: 0.06 Total: -48.20 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: -0.70 Total: -15.77 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.67 Total: 17.22 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -35.82 -8.68 -44.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914932702.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.292 kcal (2) G-P(sol) polarization free energy of solvation -35.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds