Wall clock time and date at job start Tue Mar 31 2020 01:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46499 * 119.99767 * 2 1 4 4 C 1.50694 * 109.47250 * 270.27346 * 3 2 1 5 5 O 1.20827 * 120.00294 * 0.02562 * 4 3 2 6 6 O 1.34238 * 120.00199 * 180.02562 * 4 3 2 7 7 C 1.45202 * 116.99973 * 179.97438 * 6 4 3 8 8 C 1.53000 * 109.46977 * 180.02562 * 7 6 4 9 9 C 1.52999 * 109.46881 * 180.02562 * 8 7 6 10 10 C 1.50704 * 109.46602 * 179.97438 * 9 8 7 11 11 H 1.07999 * 120.00217 * 0.02562 * 10 9 8 12 12 C 1.37885 * 119.99746 * 179.97438 * 10 9 8 13 13 N 1.31506 * 120.00106 * 180.02562 * 12 10 9 14 14 Si 1.86804 * 119.99823 * 0.02562 * 12 10 9 15 15 H 1.48494 * 109.47101 * 89.99794 * 14 12 10 16 16 H 1.48500 * 109.46617 * 210.00090 * 14 12 10 17 17 H 1.48501 * 109.47073 * 329.99502 * 14 12 10 18 18 C 1.38405 * 120.00241 * 180.27297 * 2 1 3 19 19 N 1.32492 * 119.21922 * 179.45986 * 18 2 1 20 20 C 1.32277 * 120.74235 * 179.71986 * 19 18 2 21 21 C 1.38606 * 119.19366 * 0.54099 * 20 19 18 22 22 C 1.38608 * 118.55898 * 359.73120 * 21 20 19 23 23 N 1.32273 * 119.19912 * 0.02562 * 22 21 20 24 24 H 1.09000 * 109.47295 * 269.72600 * 1 2 3 25 25 H 1.09002 * 109.47489 * 29.72706 * 1 2 3 26 26 H 1.08996 * 109.47047 * 149.72418 * 1 2 3 27 27 H 1.09003 * 109.47296 * 30.27471 * 3 2 1 28 28 H 1.09004 * 109.47373 * 150.27162 * 3 2 1 29 29 H 1.09000 * 109.47234 * 300.00340 * 7 6 4 30 30 H 1.09010 * 109.46809 * 60.00397 * 7 6 4 31 31 H 1.09001 * 109.46811 * 299.99994 * 8 7 6 32 32 H 1.08997 * 109.47175 * 60.00099 * 8 7 6 33 33 H 1.09001 * 109.47016 * 299.99406 * 9 8 7 34 34 H 1.08997 * 109.47512 * 59.99844 * 9 8 7 35 35 H 0.96998 * 120.00234 * 180.02562 * 13 12 10 36 36 H 1.07994 * 120.40211 * 180.25008 * 20 19 18 37 37 H 1.08001 * 120.72235 * 179.75269 * 21 20 19 38 38 H 1.08000 * 120.40088 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4427 1.7072 -1.4207 5 8 2.0460 1.0297 -2.3392 6 8 3.1020 2.8505 -1.6660 7 6 3.3025 3.2101 -3.0585 8 6 4.0671 4.5329 -3.1385 9 6 4.2778 4.9121 -4.6057 10 6 5.0304 6.2154 -4.6845 11 1 5.3289 6.7222 -3.7788 12 6 5.3388 6.7602 -5.9131 13 7 5.9960 7.8972 -5.9819 14 14 4.8231 5.8831 -7.4797 15 1 3.4745 6.3515 -7.8882 16 1 5.7989 6.1821 -8.5584 17 1 4.7862 4.4184 -7.2377 18 6 2.1571 -1.1986 -0.0057 19 7 3.4818 -1.1804 -0.0165 20 6 4.1735 -2.3080 -0.0167 21 6 3.4956 -3.5170 -0.0168 22 6 2.1097 -3.4996 -0.0110 23 7 1.4790 -2.3369 -0.0061 24 1 -0.3634 -0.0049 1.0276 25 1 -0.3634 0.8924 -0.5096 26 1 -0.3633 -0.8875 -0.5181 27 1 1.6105 2.0272 0.5181 28 1 3.1520 1.1373 0.5096 29 1 3.8762 2.4285 -3.5566 30 1 2.3349 3.3190 -3.5485 31 1 3.4937 5.3146 -2.6403 32 1 5.0346 4.4236 -2.6485 33 1 4.8511 4.1304 -5.1043 34 1 3.3102 5.0215 -5.0954 35 1 6.2126 8.2807 -6.8461 36 1 5.2532 -2.2867 -0.0214 37 1 4.0356 -4.4523 -0.0209 38 1 1.5515 -4.4241 -0.0105 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914932702.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:30 Heat of formation + Delta-G solvation = -45.926438 kcal Electronic energy + Delta-G solvation = -20787.021378 eV Core-core repulsion = 17436.559695 eV Total energy + Delta-G solvation = -3350.461683 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.01127 -41.37957 -38.33301 -37.19146 -35.94644 -34.65528 -33.90191 -32.25864 -30.50833 -29.17407 -27.13188 -25.34326 -24.90855 -23.44860 -22.13170 -21.79150 -19.09857 -18.87064 -18.80549 -18.51682 -17.71051 -17.35597 -16.49276 -16.31899 -16.08471 -15.86299 -15.47674 -15.35508 -14.83439 -14.59639 -14.28194 -14.08266 -14.05288 -13.72570 -13.19939 -13.00041 -12.83492 -12.61318 -12.17632 -12.04161 -11.89898 -11.83190 -11.79102 -11.71299 -11.42380 -11.38245 -11.15794 -10.79212 -10.08523 -9.03067 -8.31761 -6.36609 0.22056 0.26495 1.13298 1.31806 1.34801 1.36562 1.48148 1.89887 2.33895 2.96540 3.03210 3.27098 3.53915 3.66154 3.90058 3.95888 4.01157 4.08766 4.30310 4.30470 4.34757 4.40511 4.53411 4.67046 4.71311 4.72115 4.89927 4.91552 4.94138 5.30607 5.40103 5.46437 5.49667 5.60777 5.65735 5.85941 6.24388 6.38338 6.67353 6.71975 7.26891 7.27846 8.84787 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.029879 B = 0.002906 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.892431 B = 9633.085788 C = 9906.713150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.581 5.581 3 C 0.148 3.852 4 C 0.440 3.560 5 O -0.541 6.541 6 O -0.357 6.357 7 C 0.077 3.923 8 C -0.091 4.091 9 C -0.009 4.009 10 C -0.534 4.534 11 H 0.037 0.963 12 C 0.006 3.994 13 N -0.948 5.948 14 Si 0.949 3.051 15 H -0.265 1.265 16 H -0.282 1.282 17 H -0.249 1.249 18 C 0.544 3.456 19 N -0.598 5.598 20 C 0.175 3.825 21 C -0.280 4.280 22 C 0.178 3.822 23 N -0.585 5.585 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.161 0.839 28 H 0.135 0.865 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.022 0.978 34 H 0.023 0.977 35 H 0.268 0.732 36 H 0.192 0.808 37 H 0.179 0.821 38 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.854 -24.687 16.145 31.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.298 5.298 3 C 0.023 3.977 4 C 0.282 3.718 5 O -0.431 6.431 6 O -0.272 6.272 7 C 0.004 3.996 8 C -0.129 4.129 9 C -0.047 4.047 10 C -0.572 4.572 11 H 0.056 0.944 12 C -0.191 4.191 13 N -0.589 5.589 14 Si 0.772 3.228 15 H -0.190 1.190 16 H -0.208 1.208 17 H -0.173 1.173 18 C 0.189 3.811 19 N -0.320 5.320 20 C 0.009 3.991 21 C -0.304 4.304 22 C 0.011 3.989 23 N -0.308 5.308 24 H 0.096 0.904 25 H 0.094 0.906 26 H 0.088 0.912 27 H 0.179 0.821 28 H 0.153 0.847 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.040 0.960 34 H 0.042 0.958 35 H 0.077 0.923 36 H 0.209 0.791 37 H 0.196 0.804 38 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -10.510 -23.712 15.737 30.337 hybrid contribution 0.606 -0.555 -1.229 1.478 sum -9.904 -24.267 14.508 29.957 Atomic orbital electron populations 1.21755 0.75683 1.03359 1.02846 1.45782 1.06642 1.00655 1.76720 1.21110 1.02195 0.86213 0.88221 1.25322 0.73644 0.78068 0.94740 1.90640 1.49530 1.54772 1.48141 1.86494 1.69062 1.40119 1.31555 1.23117 1.00645 0.97442 0.78433 1.21314 0.99730 0.93789 0.98028 1.19448 0.96410 0.95223 0.93599 1.21395 1.36007 1.06448 0.93307 0.94431 1.25981 0.94558 0.95455 1.03088 1.70048 1.41857 1.20553 1.26416 0.85681 0.78584 0.80248 0.78293 1.18993 1.20756 1.17313 1.19468 0.85759 0.86897 0.89007 1.67879 1.07130 1.34128 1.22898 1.23547 1.01760 0.86800 0.87041 1.22931 0.96521 1.01493 1.09497 1.23634 0.93000 0.95417 0.86804 1.67908 1.41719 0.98541 1.22633 0.90371 0.90633 0.91247 0.82120 0.84720 0.92110 0.91307 0.91454 0.91822 0.95964 0.95822 0.92348 0.79119 0.80353 0.78336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.81 10.44 127.77 1.33 3.14 16 2 N -0.58 -12.90 2.46 -740.24 -1.82 -14.72 16 3 C 0.15 2.96 6.00 85.63 0.51 3.48 16 4 C 0.44 12.80 8.03 71.23 0.57 13.37 16 5 O -0.54 -19.56 16.18 21.96 0.36 -19.20 16 6 O -0.36 -11.19 10.22 -51.49 -0.53 -11.72 16 7 C 0.08 2.70 5.47 71.98 0.39 3.09 16 8 C -0.09 -3.62 5.53 30.59 0.17 -3.45 16 9 C -0.01 -0.44 4.04 29.85 0.12 -0.32 16 10 C -0.53 -31.01 9.66 25.60 0.25 -30.76 16 11 H 0.04 2.38 7.99 -2.91 -0.02 2.36 16 12 C 0.01 0.37 5.47 84.66 0.46 0.83 16 13 N -0.95 -59.74 13.96 21.45 0.30 -59.44 16 14 Si 0.95 44.62 27.47 68.60 1.88 46.51 16 15 H -0.26 -11.93 7.11 99.48 0.71 -11.23 16 16 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 17 H -0.25 -11.00 6.54 99.48 0.65 -10.35 16 18 C 0.54 13.54 8.17 261.49 2.14 15.67 16 19 N -0.60 -14.49 9.12 -197.99 -1.80 -16.30 16 20 C 0.17 2.99 11.30 84.71 0.96 3.95 16 21 C -0.28 -3.55 10.16 22.45 0.23 -3.32 16 22 C 0.18 2.69 11.30 84.71 0.96 3.65 16 23 N -0.59 -13.10 9.12 -197.98 -1.80 -14.90 16 24 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.07 1.17 8.07 -2.39 -0.02 1.15 16 26 H 0.07 1.37 7.34 -2.39 -0.02 1.35 16 27 H 0.16 1.91 8.07 -2.39 -0.02 1.89 16 28 H 0.14 2.58 7.34 -2.38 -0.02 2.56 16 29 H 0.06 2.17 8.13 -2.39 -0.02 2.15 16 30 H 0.07 2.35 8.13 -2.38 -0.02 2.33 16 31 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 32 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 33 H 0.02 1.03 7.20 -2.39 -0.02 1.01 16 34 H 0.02 1.07 7.57 -2.39 -0.02 1.05 16 35 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 36 H 0.19 2.03 8.06 -2.91 -0.02 2.00 16 37 H 0.18 0.90 8.06 -2.91 -0.02 0.87 16 38 H 0.20 1.41 8.06 -2.91 -0.02 1.39 16 Total: -1.00 -78.80 331.60 5.67 -73.13 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: 0.99 Total: 7.30 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: 8.09 Total: 9.34 kcal Atomic # 7 Polarization: -100.23 SS G_CDS: -5.13 Total: -105.36 kcal Atomic # 8 Polarization: -30.75 SS G_CDS: -0.17 Total: -30.92 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 1.88 Total: 46.51 kcal Total: -78.80 5.67 -73.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914932702.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.205 kcal (2) G-P(sol) polarization free energy of solvation -78.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds