Wall clock time and date at job start Tue Mar 31 2020 01:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.35876 * 126.07763 * 2 1 4 4 C 1.35590 * 107.57946 * 179.73608 * 3 2 1 5 5 O 1.36230 * 126.05363 * 180.22962 * 4 3 2 6 6 C 1.42895 * 117.00257 * 180.02562 * 5 4 3 7 7 H 1.08996 * 110.43337 * 31.08722 * 6 5 4 8 8 C 1.54891 * 110.48932 * 268.54737 * 6 5 4 9 9 C 1.54889 * 102.74955 * 203.37912 * 8 6 5 10 10 C 1.54263 * 104.19532 * 37.94132 * 9 8 6 11 11 C 1.53874 * 106.60052 * 336.39211 * 10 9 8 12 12 H 1.09006 * 110.03067 * 240.71742 * 11 10 9 13 13 N 1.46491 * 110.03625 * 119.28568 * 11 10 9 14 14 C 1.34782 * 120.00164 * 87.83323 * 13 11 10 15 15 O 1.21686 * 119.99816 * 359.97438 * 14 13 11 16 16 C 1.46372 * 120.00062 * 180.02562 * 14 13 11 17 17 H 1.07998 * 119.99981 * 359.97438 * 16 14 13 18 18 C 1.40055 * 120.00102 * 179.97438 * 16 14 13 19 19 N 1.30675 * 119.99447 * 359.97438 * 18 16 14 20 20 Si 1.86794 * 119.99816 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47293 * 60.00366 * 20 18 16 22 22 H 1.48506 * 109.46688 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47277 * 299.99681 * 20 18 16 24 24 C 1.40122 * 107.89506 * 0.26709 * 4 3 2 25 25 N 1.30857 * 108.35504 * 359.97438 * 24 4 3 26 26 H 1.08999 * 109.47430 * 89.99961 * 1 2 3 27 27 H 1.09006 * 109.47341 * 209.99797 * 1 2 3 28 28 H 1.08996 * 109.47330 * 329.99452 * 1 2 3 29 29 H 1.08002 * 126.21270 * 0.02562 * 3 2 1 30 30 H 1.09001 * 110.75083 * 321.69601 * 8 6 5 31 31 H 1.09001 * 110.75633 * 85.05755 * 8 6 5 32 32 H 1.08999 * 110.48380 * 156.62020 * 9 8 6 33 33 H 1.09001 * 110.48261 * 279.26251 * 9 8 6 34 34 H 1.09003 * 110.03323 * 95.67401 * 10 9 8 35 35 H 1.08999 * 110.03000 * 217.05472 * 10 9 8 36 36 H 0.97002 * 120.00309 * 267.83221 * 13 11 10 37 37 H 0.97000 * 119.99626 * 179.97438 * 19 18 16 38 38 H 1.07996 * 125.81771 * 180.02562 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2651 1.0982 0.0000 4 6 3.5509 0.6680 0.0060 5 8 4.6607 1.4581 0.0124 6 6 5.9276 0.7972 0.0174 7 1 5.8629 -0.1536 -0.5117 8 6 6.4184 0.5769 1.4699 9 6 7.9522 0.4487 1.2966 10 6 8.2961 1.4761 0.1985 11 6 7.0088 1.6978 -0.6148 12 1 7.1705 1.4132 -1.6546 13 7 6.6009 3.1025 -0.5360 14 6 7.0870 3.9961 -1.4202 15 8 7.8650 3.6360 -2.2837 16 6 6.6798 5.3998 -1.3410 17 1 5.9896 5.7194 -0.5744 18 6 7.1853 6.3285 -2.2595 19 7 8.0208 5.9417 -3.1868 20 14 6.6651 8.1197 -2.1589 21 1 7.0534 8.6744 -0.8373 22 1 7.3354 8.8910 -3.2364 23 1 5.1925 8.2175 -2.3235 24 6 3.5362 -0.7331 0.0035 25 7 2.2899 -1.1321 -0.0031 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5139 29 1 1.9365 2.1270 0.0004 30 1 6.1706 1.4345 2.0955 31 1 5.9985 -0.3394 1.8848 32 1 8.4633 0.6985 2.2264 33 1 8.2167 -0.5581 0.9734 34 1 8.6173 2.4139 0.6519 35 1 9.0831 1.0845 -0.4459 36 1 5.9810 3.3897 0.1526 37 1 8.3707 6.5848 -3.8232 38 1 4.4052 -1.3743 0.0073 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926282610.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:23:48 Heat of formation + Delta-G solvation = 4.824871 kcal Electronic energy + Delta-G solvation = -21776.500601 eV Core-core repulsion = 18428.239659 eV Total energy + Delta-G solvation = -3348.260941 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.20917 -39.11137 -36.97972 -35.66972 -32.96509 -32.56999 -31.67743 -29.80512 -27.70567 -27.37286 -26.44549 -25.51381 -21.71362 -21.17993 -20.40717 -20.15968 -19.00958 -17.79344 -17.25162 -15.80749 -15.67940 -15.50776 -15.03598 -14.82358 -14.38720 -14.34736 -13.77424 -13.68131 -13.43959 -12.88170 -12.77232 -12.49557 -12.19578 -12.10675 -11.69811 -11.32762 -11.06110 -10.89283 -10.83959 -10.73626 -10.44231 -10.38475 -10.32952 -10.14764 -10.10714 -9.45120 -8.78096 -7.73544 -7.52684 -7.36616 -6.11217 -4.55481 1.80477 2.37941 2.85135 3.19982 3.24475 3.26492 3.50900 4.16882 4.58080 4.63104 4.74371 4.82418 4.90280 4.97922 4.98635 5.06213 5.21460 5.26771 5.39287 5.53285 5.72417 5.74826 5.80545 5.89872 5.98394 6.01398 6.13241 6.24640 6.36082 6.40928 6.63780 6.81509 6.92042 7.50635 7.56265 7.72770 8.07411 8.25707 8.43657 9.10157 9.67488 10.68528 10.88376 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.016207 B = 0.004851 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.217627 B = 5770.635268 C = 7089.075293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.375 5.375 3 C 0.013 3.987 4 C -0.014 4.014 5 O -0.280 6.280 6 C 0.081 3.919 7 H 0.075 0.925 8 C -0.143 4.143 9 C -0.121 4.121 10 C -0.133 4.133 11 C 0.161 3.839 12 H 0.083 0.917 13 N -0.748 5.748 14 C 0.557 3.443 15 O -0.583 6.583 16 C -0.544 4.544 17 H 0.066 0.934 18 C 0.088 3.912 19 N -0.770 5.770 20 Si 0.906 3.094 21 H -0.269 1.269 22 H -0.281 1.281 23 H -0.269 1.269 24 C -0.007 4.007 25 N -0.279 5.279 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.181 0.819 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.385 0.615 37 H 0.267 0.733 38 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.750 -10.953 9.235 17.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.164 5.164 3 C -0.130 4.130 4 C -0.068 4.068 5 O -0.191 6.191 6 C 0.023 3.977 7 H 0.093 0.907 8 C -0.180 4.180 9 C -0.159 4.159 10 C -0.172 4.172 11 C 0.053 3.947 12 H 0.101 0.899 13 N -0.402 5.402 14 C 0.361 3.639 15 O -0.467 6.467 16 C -0.581 4.581 17 H 0.084 0.916 18 C -0.131 4.131 19 N -0.399 5.399 20 Si 0.731 3.269 21 H -0.193 1.193 22 H -0.207 1.207 23 H -0.194 1.194 24 C -0.193 4.193 25 N -0.103 5.103 26 H 0.091 0.909 27 H 0.105 0.895 28 H 0.106 0.894 29 H 0.198 0.802 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.217 0.783 37 H 0.078 0.922 38 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -10.939 -11.906 8.406 18.223 hybrid contribution 0.047 1.509 0.347 1.549 sum -10.892 -10.397 8.753 17.417 Atomic orbital electron populations 1.21783 0.73717 1.04297 1.03278 1.48168 1.06284 1.03126 1.58811 1.21547 0.88915 0.93536 1.09037 1.18759 0.88157 0.89361 1.10570 1.86128 1.11163 1.31783 1.90029 1.23596 0.81728 0.96061 0.96317 0.90723 1.22986 0.96246 1.02035 0.96774 1.22261 0.94928 0.99368 0.99344 1.22656 0.98157 0.99504 0.96910 1.21149 0.90100 0.84407 0.99037 0.89938 1.45952 1.51826 1.05579 1.36870 1.18188 0.80331 0.85664 0.79713 1.90585 1.38352 1.80236 1.37482 1.20845 1.29298 0.91717 1.16226 0.91570 1.25688 0.93411 0.99961 0.94041 1.70019 1.22967 1.34803 1.12093 0.86470 0.79392 0.82676 0.78382 1.19344 1.20657 1.19368 1.24007 0.95874 0.94380 1.05087 1.77190 1.01039 1.08884 1.23174 0.90893 0.89490 0.89418 0.80163 0.90283 0.91690 0.91556 0.91788 0.90660 0.91570 0.78267 0.92207 0.80002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.79 11.48 59.84 0.69 1.48 16 2 N -0.37 -4.56 4.04 -67.85 -0.27 -4.83 16 3 C 0.01 0.17 11.56 -16.71 -0.19 -0.02 16 4 C -0.01 -0.21 6.96 -39.82 -0.28 -0.49 16 5 O -0.28 -4.66 8.65 -20.47 -0.18 -4.84 16 6 C 0.08 1.23 2.94 -25.07 -0.07 1.16 16 7 H 0.07 1.01 6.48 -51.93 -0.34 0.68 16 8 C -0.14 -1.83 6.62 -24.74 -0.16 -2.00 16 9 C -0.12 -1.54 6.83 -25.07 -0.17 -1.71 16 10 C -0.13 -2.25 6.59 -25.61 -0.17 -2.42 16 11 C 0.16 3.09 3.20 -66.82 -0.21 2.88 16 12 H 0.08 1.80 7.57 -51.93 -0.39 1.41 16 13 N -0.75 -17.06 4.56 -54.13 -0.25 -17.31 16 14 C 0.56 16.00 7.74 -12.99 -0.10 15.90 16 15 O -0.58 -18.94 14.67 5.20 0.08 -18.86 16 16 C -0.54 -15.60 9.54 -35.63 -0.34 -15.94 16 17 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 18 C 0.09 2.50 5.50 -17.36 -0.10 2.40 16 19 N -0.77 -23.37 11.83 55.55 0.66 -22.71 16 20 Si 0.91 20.42 29.56 -169.99 -5.02 15.40 16 21 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 22 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 23 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 24 C -0.01 -0.10 10.91 -17.26 -0.19 -0.29 16 25 N -0.28 -3.91 12.57 30.68 0.39 -3.53 16 26 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.18 1.97 8.06 -52.49 -0.42 1.55 16 30 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.07 1.42 7.92 -51.93 -0.41 1.01 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.39 8.16 7.85 -40.82 -0.32 7.84 16 37 H 0.27 7.39 8.29 -40.82 -0.34 7.05 16 38 H 0.18 2.04 7.04 -52.49 -0.37 1.67 16 LS Contribution 323.25 15.07 4.87 4.87 Total: -1.00 -36.45 323.25 -6.21 -42.66 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -5.18 Total: 8.20 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: -1.30 Total: 0.95 kcal Atomic # 7 Polarization: -48.90 SS G_CDS: 0.52 Total: -48.38 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -0.10 Total: -23.70 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -36.45 -6.21 -42.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926282610.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.486 kcal (2) G-P(sol) polarization free energy of solvation -36.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds