Wall clock time and date at job start Tue Mar 31 2020 01:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.35876 * 126.07763 * 2 1 4 4 C 1.35590 * 107.57946 * 179.73608 * 3 2 1 5 5 O 1.36230 * 126.05363 * 180.22962 * 4 3 2 6 6 C 1.42895 * 117.00257 * 180.02562 * 5 4 3 7 7 H 1.08996 * 110.43337 * 31.08722 * 6 5 4 8 8 C 1.54891 * 110.48932 * 268.54737 * 6 5 4 9 9 C 1.54889 * 102.74955 * 203.37912 * 8 6 5 10 10 C 1.54263 * 104.19532 * 37.94132 * 9 8 6 11 11 C 1.53874 * 106.60052 * 336.39211 * 10 9 8 12 12 H 1.09006 * 110.03067 * 240.71742 * 11 10 9 13 13 N 1.46491 * 110.03625 * 119.28568 * 11 10 9 14 14 C 1.34782 * 120.00164 * 87.83323 * 13 11 10 15 15 O 1.21686 * 119.99816 * 359.97438 * 14 13 11 16 16 C 1.46372 * 120.00062 * 180.02562 * 14 13 11 17 17 H 1.07998 * 119.99981 * 359.97438 * 16 14 13 18 18 C 1.40055 * 120.00102 * 179.97438 * 16 14 13 19 19 N 1.30675 * 119.99447 * 359.97438 * 18 16 14 20 20 Si 1.86794 * 119.99816 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47293 * 60.00366 * 20 18 16 22 22 H 1.48506 * 109.46688 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47277 * 299.99681 * 20 18 16 24 24 C 1.40122 * 107.89506 * 0.26709 * 4 3 2 25 25 N 1.30857 * 108.35504 * 359.97438 * 24 4 3 26 26 H 1.08999 * 109.47430 * 89.99961 * 1 2 3 27 27 H 1.09006 * 109.47341 * 209.99797 * 1 2 3 28 28 H 1.08996 * 109.47330 * 329.99452 * 1 2 3 29 29 H 1.08002 * 126.21270 * 0.02562 * 3 2 1 30 30 H 1.09001 * 110.75083 * 321.69601 * 8 6 5 31 31 H 1.09001 * 110.75633 * 85.05755 * 8 6 5 32 32 H 1.08999 * 110.48380 * 156.62020 * 9 8 6 33 33 H 1.09001 * 110.48261 * 279.26251 * 9 8 6 34 34 H 1.09003 * 110.03323 * 95.67401 * 10 9 8 35 35 H 1.08999 * 110.03000 * 217.05472 * 10 9 8 36 36 H 0.97002 * 120.00309 * 267.83221 * 13 11 10 37 37 H 0.97000 * 119.99626 * 179.97438 * 19 18 16 38 38 H 1.07996 * 125.81771 * 180.02562 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2651 1.0982 0.0000 4 6 3.5509 0.6680 0.0060 5 8 4.6607 1.4581 0.0124 6 6 5.9276 0.7972 0.0174 7 1 5.8629 -0.1536 -0.5117 8 6 6.4184 0.5769 1.4699 9 6 7.9522 0.4487 1.2966 10 6 8.2961 1.4761 0.1985 11 6 7.0088 1.6978 -0.6148 12 1 7.1705 1.4132 -1.6546 13 7 6.6009 3.1025 -0.5360 14 6 7.0870 3.9961 -1.4202 15 8 7.8650 3.6360 -2.2837 16 6 6.6798 5.3998 -1.3410 17 1 5.9896 5.7194 -0.5744 18 6 7.1853 6.3285 -2.2595 19 7 8.0208 5.9417 -3.1868 20 14 6.6651 8.1197 -2.1589 21 1 7.0534 8.6744 -0.8373 22 1 7.3354 8.8910 -3.2364 23 1 5.1925 8.2175 -2.3235 24 6 3.5362 -0.7331 0.0035 25 7 2.2899 -1.1321 -0.0031 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5139 29 1 1.9365 2.1270 0.0004 30 1 6.1706 1.4345 2.0955 31 1 5.9985 -0.3394 1.8848 32 1 8.4633 0.6985 2.2264 33 1 8.2167 -0.5581 0.9734 34 1 8.6173 2.4139 0.6519 35 1 9.0831 1.0845 -0.4459 36 1 5.9810 3.3897 0.1526 37 1 8.3707 6.5848 -3.8232 38 1 4.4052 -1.3743 0.0073 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000926282610.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:23:47 Heat of formation + Delta-G solvation = -21.985624 kcal Electronic energy + Delta-G solvation = -21777.663191 eV Core-core repulsion = 18428.239659 eV Total energy + Delta-G solvation = -3349.423532 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.21626 -40.50014 -38.78934 -37.13529 -34.67116 -33.82970 -33.61142 -30.83125 -29.33416 -28.66907 -27.46009 -27.21210 -22.92836 -22.27007 -21.96800 -21.41241 -20.48449 -19.23528 -18.95672 -17.51175 -16.92992 -16.66921 -16.49435 -16.17282 -15.65469 -15.45541 -15.30052 -15.00226 -14.75961 -14.42339 -14.14554 -13.57318 -13.40913 -13.25679 -13.14252 -13.02627 -12.73412 -12.58649 -12.28072 -12.14725 -12.01194 -11.98710 -11.60144 -11.45571 -11.42132 -10.89110 -10.39216 -9.80821 -9.35261 -8.78893 -8.25309 -6.80981 0.82357 1.40446 1.44527 1.54256 1.55790 1.79768 2.25355 2.37853 2.51708 3.26311 3.51689 3.58697 3.78980 3.82668 3.89880 4.08929 4.22990 4.31360 4.46484 4.48265 4.54540 4.63250 4.64822 4.72863 4.77926 4.80826 5.02252 5.06181 5.20262 5.25880 5.34300 5.35112 5.44735 5.94180 6.03963 6.28086 6.34729 6.57686 6.69633 6.90465 7.63971 8.55334 8.72669 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.016207 B = 0.004851 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.217627 B = 5770.635268 C = 7089.075293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.371 5.371 3 C 0.015 3.985 4 C -0.047 4.047 5 O -0.303 6.303 6 C 0.089 3.911 7 H 0.093 0.907 8 C -0.131 4.131 9 C -0.107 4.107 10 C -0.131 4.131 11 C 0.149 3.851 12 H 0.045 0.955 13 N -0.735 5.735 14 C 0.541 3.459 15 O -0.633 6.633 16 C -0.574 4.574 17 H 0.083 0.917 18 C 0.030 3.970 19 N -0.823 5.823 20 Si 0.997 3.003 21 H -0.254 1.254 22 H -0.274 1.274 23 H -0.255 1.255 24 C -0.010 4.010 25 N -0.300 5.300 26 H 0.084 0.916 27 H 0.097 0.903 28 H 0.114 0.886 29 H 0.200 0.800 30 H 0.071 0.929 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.049 0.951 35 H 0.059 0.941 36 H 0.394 0.606 37 H 0.273 0.727 38 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.612 -10.945 11.042 20.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.160 5.160 3 C -0.130 4.130 4 C -0.101 4.101 5 O -0.215 6.215 6 C 0.031 3.969 7 H 0.110 0.890 8 C -0.168 4.168 9 C -0.144 4.144 10 C -0.170 4.170 11 C 0.043 3.957 12 H 0.063 0.937 13 N -0.388 5.388 14 C 0.345 3.655 15 O -0.521 6.521 16 C -0.611 4.611 17 H 0.101 0.899 18 C -0.185 4.185 19 N -0.453 5.453 20 Si 0.816 3.184 21 H -0.178 1.178 22 H -0.199 1.199 23 H -0.179 1.179 24 C -0.195 4.195 25 N -0.125 5.125 26 H 0.102 0.898 27 H 0.116 0.884 28 H 0.132 0.868 29 H 0.216 0.784 30 H 0.090 0.910 31 H 0.113 0.887 32 H 0.102 0.898 33 H 0.108 0.892 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.228 0.772 37 H 0.083 0.917 38 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -12.852 -11.952 10.265 20.333 hybrid contribution 0.537 1.447 -0.240 1.562 sum -12.315 -10.505 10.026 19.041 Atomic orbital electron populations 1.22205 0.71046 1.06199 1.04614 1.48613 1.07749 1.02286 1.57305 1.21965 0.88785 0.94668 1.07536 1.19042 0.88118 0.90031 1.12926 1.86050 1.11871 1.32947 1.90657 1.23508 0.80424 0.95109 0.97832 0.88954 1.22930 0.96041 1.03165 0.94707 1.22233 0.94962 0.99034 0.98192 1.22541 0.96644 0.99886 0.97933 1.21376 0.93286 0.83024 0.98055 0.93689 1.45598 1.50970 1.06652 1.35582 1.18552 0.80082 0.86922 0.79951 1.90536 1.40579 1.81265 1.39697 1.21385 1.30092 0.92341 1.17264 0.89863 1.26947 0.92734 1.05920 0.92895 1.70193 1.24537 1.37263 1.13285 0.85096 0.79436 0.74833 0.79056 1.17808 1.19888 1.17932 1.24272 0.96486 0.94075 1.04671 1.77146 1.01433 1.09951 1.24001 0.89789 0.88416 0.86791 0.78368 0.91041 0.88654 0.89809 0.89217 0.93171 0.92262 0.77245 0.91701 0.78209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.15 11.48 127.77 1.47 2.62 16 2 N -0.37 -8.29 4.04 -368.58 -1.49 -9.78 16 3 C 0.02 0.37 11.56 83.45 0.96 1.34 16 4 C -0.05 -1.36 6.96 22.11 0.15 -1.20 16 5 O -0.30 -9.99 8.65 -96.17 -0.83 -10.82 16 6 C 0.09 2.64 2.94 31.67 0.09 2.74 16 7 H 0.09 2.40 6.48 -2.39 -0.02 2.39 16 8 C -0.13 -3.05 6.62 31.89 0.21 -2.84 16 9 C -0.11 -2.47 6.83 31.67 0.22 -2.25 16 10 C -0.13 -4.52 6.59 31.32 0.21 -4.32 16 11 C 0.15 5.96 3.20 45.72 0.15 6.10 16 12 H 0.04 2.11 7.57 -2.38 -0.02 2.09 16 13 N -0.73 -34.81 4.56 -443.39 -2.02 -36.83 16 14 C 0.54 32.48 7.74 86.36 0.67 33.15 16 15 O -0.63 -43.49 14.67 -4.30 -0.06 -43.55 16 16 C -0.57 -33.66 9.54 24.83 0.24 -33.42 16 17 H 0.08 4.42 7.85 -2.91 -0.02 4.39 16 18 C 0.03 1.70 5.50 85.31 0.47 2.17 16 19 N -0.82 -51.60 11.83 21.84 0.26 -51.34 16 20 Si 1.00 41.91 29.56 68.60 2.03 43.94 16 21 H -0.25 -10.03 7.11 99.48 0.71 -9.32 16 22 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 23 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 24 C -0.01 -0.26 10.91 85.30 0.93 0.67 16 25 N -0.30 -7.95 12.57 -56.85 -0.71 -8.67 16 26 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.10 0.95 8.14 -2.38 -0.02 0.94 16 28 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.20 3.98 8.06 -2.91 -0.02 3.96 16 30 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.05 1.96 7.92 -2.39 -0.02 1.94 16 35 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.39 17.09 7.85 -92.71 -0.73 16.36 16 37 H 0.27 15.54 8.29 -92.71 -0.77 14.77 16 38 H 0.20 4.08 7.04 -2.91 -0.02 4.06 16 Total: -1.00 -83.35 323.25 3.28 -80.07 By element: Atomic # 1 Polarization: 31.86 SS G_CDS: 0.35 Total: 32.21 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: 5.76 Total: 4.76 kcal Atomic # 7 Polarization: -102.64 SS G_CDS: -3.97 Total: -106.61 kcal Atomic # 8 Polarization: -53.48 SS G_CDS: -0.89 Total: -54.38 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Total: -83.35 3.28 -80.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926282610.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.083 kcal (2) G-P(sol) polarization free energy of solvation -83.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds