Wall clock time and date at job start Tue Mar 31 2020 01:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45199 * 109.47382 * 2 1 4 4 C 1.34755 * 116.99788 * 180.02562 * 3 2 1 5 5 O 1.21516 * 120.00308 * 0.02562 * 4 3 2 6 6 C 1.47291 * 119.99518 * 180.02562 * 4 3 2 7 7 C 1.38124 * 126.42904 * 359.97438 * 6 4 3 8 8 N 1.34228 * 107.40719 * 180.28663 * 7 6 4 9 9 H 0.96992 * 125.74226 * 179.73682 * 8 7 6 10 10 N 1.39933 * 108.51218 * 359.57833 * 8 7 6 11 11 C 1.30429 * 108.91863 * 0.43017 * 10 8 7 12 12 C 1.50699 * 125.99280 * 179.72278 * 11 10 8 13 13 H 1.09001 * 110.88737 * 180.72848 * 12 11 10 14 14 C 1.55155 * 111.00414 * 56.84653 * 12 11 10 15 15 C 1.54372 * 102.91963 * 206.45329 * 14 12 11 16 16 N 1.47020 * 107.28975 * 22.13662 * 15 14 12 17 17 C 1.36944 * 125.65010 * 181.12631 * 16 15 14 18 18 H 1.08003 * 119.99686 * 179.97438 * 17 16 15 19 19 C 1.38806 * 119.99830 * 359.96080 * 17 16 15 20 20 N 1.31617 * 119.99997 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00029 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47064 * 359.97438 * 21 19 17 23 23 H 1.48492 * 109.47411 * 120.00059 * 21 19 17 24 24 H 1.48508 * 109.46811 * 240.00124 * 21 19 17 25 25 C 1.47420 * 108.70283 * 1.09294 * 16 15 14 26 26 H 1.09000 * 109.47432 * 299.99828 * 1 2 3 27 27 H 1.08998 * 109.47399 * 59.99722 * 1 2 3 28 28 H 1.08997 * 109.47367 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46812 * 239.99738 * 2 1 3 30 30 H 1.09003 * 109.47259 * 120.00755 * 2 1 3 31 31 H 1.08002 * 126.29296 * 0.02562 * 7 6 4 32 32 H 1.09001 * 110.72046 * 324.78266 * 14 12 11 33 33 H 1.08993 * 110.71813 * 88.06049 * 14 12 11 34 34 H 1.08997 * 109.84562 * 262.72893 * 15 14 12 35 35 H 1.09001 * 109.90204 * 141.57251 * 15 14 12 36 36 H 0.97006 * 120.00215 * 179.97438 * 20 19 17 37 37 H 1.09008 * 110.37058 * 217.02971 * 25 16 15 38 38 H 1.09006 * 110.46318 * 94.75412 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3499 1.5454 -0.0005 5 8 4.0901 0.5817 -0.0015 6 6 3.9129 2.9065 0.0000 7 6 3.1995 4.0892 0.0005 8 7 4.0887 5.0946 -0.0055 9 1 3.8744 6.0405 -0.0102 10 7 5.3770 4.5483 -0.0002 11 6 5.2847 3.2473 -0.0004 12 6 6.4382 2.2775 -0.0014 13 1 6.0804 1.2480 -0.0143 14 6 7.3745 2.5257 1.2106 15 6 8.7360 1.9993 0.7085 16 7 8.6958 2.0156 -0.7611 17 6 9.7032 1.6028 -1.5918 18 1 9.5752 1.6546 -2.6630 19 6 10.8889 1.1181 -1.0571 20 7 11.0451 1.0557 0.2483 21 14 12.2634 0.5557 -2.1901 22 1 11.8412 0.7272 -3.6035 23 1 13.4796 1.3683 -1.9342 24 1 12.5617 -0.8763 -1.9335 25 6 7.3909 2.5491 -1.1924 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5140 0.8899 31 1 2.1239 4.1869 0.0010 32 1 7.4338 3.5896 1.4406 33 1 7.0384 1.9603 2.0797 34 1 8.8928 0.9808 1.0637 35 1 9.5381 2.6459 1.0645 36 1 11.8735 0.7166 0.6220 37 1 7.0430 2.0264 -2.0834 38 1 7.4617 3.6197 -1.3849 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931008487.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:57 Heat of formation + Delta-G solvation = 11.091504 kcal Electronic energy + Delta-G solvation = -21697.077202 eV Core-core repulsion = 18349.088002 eV Total energy + Delta-G solvation = -3347.989200 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.47279 -39.84396 -37.25039 -36.37355 -33.09391 -32.04364 -31.35667 -30.33696 -29.05477 -27.43551 -24.59405 -24.32065 -22.74466 -21.90350 -20.38285 -19.90534 -18.83180 -18.33682 -17.21200 -16.69644 -16.51315 -15.81973 -14.85467 -14.80857 -14.42060 -14.19105 -13.89830 -13.62912 -13.29464 -12.97653 -12.23034 -12.12360 -12.04333 -11.86415 -11.71760 -11.63799 -10.97821 -10.91044 -10.75717 -10.72413 -10.56687 -10.35610 -10.00469 -9.86141 -9.58692 -9.44448 -9.22719 -8.90900 -8.47438 -6.68593 -5.58525 -2.91132 1.32083 2.16449 2.49493 2.88803 3.26973 3.48566 3.53462 3.56333 4.48282 4.56353 4.64227 4.77576 4.81402 5.05917 5.13230 5.20403 5.40353 5.58163 5.59257 5.62276 5.65628 5.75108 5.86601 6.04824 6.05620 6.37190 6.50948 6.59719 6.68137 6.72061 6.83125 7.00388 7.17713 7.62708 7.69912 7.79438 7.96367 7.96969 8.38971 9.35073 9.95290 10.62537 11.53447 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.022516 B = 0.004209 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.244593 B = 6651.142787 C = 7388.316220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.063 3.937 3 O -0.363 6.363 4 C 0.541 3.459 5 O -0.500 6.500 6 C -0.281 4.281 7 C 0.127 3.873 8 N -0.464 5.464 9 H 0.444 0.556 10 N -0.286 5.286 11 C 0.169 3.831 12 C -0.046 4.046 13 H 0.117 0.883 14 C -0.130 4.130 15 C 0.180 3.820 16 N -0.604 5.604 17 C -0.223 4.223 18 H 0.078 0.922 19 C -0.011 4.011 20 N -0.922 5.922 21 Si 0.911 3.089 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.291 1.291 25 C 0.151 3.849 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.191 0.809 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.047 0.953 35 H 0.044 0.956 36 H 0.250 0.750 37 H 0.038 0.962 38 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.111 4.762 1.499 23.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.011 4.011 3 O -0.281 6.281 4 C 0.385 3.615 5 O -0.387 6.387 6 C -0.294 4.294 7 C -0.027 4.027 8 N -0.166 5.166 9 H 0.288 0.712 10 N -0.107 5.107 11 C 0.000 4.000 12 C -0.067 4.067 13 H 0.135 0.865 14 C -0.169 4.169 15 C 0.055 3.945 16 N -0.330 5.330 17 C -0.351 4.351 18 H 0.096 0.904 19 C -0.206 4.206 20 N -0.570 5.570 21 Si 0.742 3.258 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.218 1.218 25 C 0.024 3.976 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.208 0.792 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -21.886 5.358 1.507 22.583 hybrid contribution -0.077 -0.551 -0.516 0.759 sum -21.963 4.807 0.991 22.505 Atomic orbital electron populations 1.21796 0.92872 1.02872 1.03269 1.22977 0.94935 0.80305 1.02879 1.86499 1.24287 1.32216 1.85129 1.19996 0.80065 0.88632 0.72764 1.90852 1.59790 1.41918 1.46176 1.19402 0.93260 0.90509 1.26254 1.23221 0.97005 0.87530 0.94991 1.46273 1.04691 1.09138 1.56530 0.71173 1.77388 0.97608 1.09592 1.26118 1.22550 0.93359 0.91411 0.92662 1.21343 0.89558 0.96802 0.99005 0.86516 1.22944 0.97433 1.00693 0.95873 1.21155 0.90486 0.99596 0.83279 1.44467 1.11907 1.74521 1.02147 1.19121 0.92285 1.34681 0.89054 0.90402 1.24792 0.98064 1.01779 0.96009 1.69986 1.25795 1.52158 1.09079 0.86038 0.82126 0.78010 0.79582 1.20559 1.21872 1.21821 1.21508 0.85792 0.96620 0.93659 0.91622 0.91611 0.90339 0.91126 0.91157 0.79203 0.92075 0.92134 0.93449 0.93800 0.93917 0.94389 0.95766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 10.29 37.15 0.38 -0.59 16 2 C 0.06 0.62 6.20 37.15 0.23 0.85 16 3 O -0.36 -4.35 10.05 -40.64 -0.41 -4.75 16 4 C 0.54 8.18 7.95 34.41 0.27 8.46 16 5 O -0.50 -9.22 14.40 -19.28 -0.28 -9.50 16 6 C -0.28 -4.09 6.13 -105.08 -0.64 -4.73 16 7 C 0.13 1.26 11.86 -16.55 -0.20 1.06 16 8 N -0.46 -4.86 7.28 30.86 0.22 -4.63 16 9 H 0.44 2.76 8.96 -182.73 -1.64 1.12 16 10 N -0.29 -4.61 12.32 33.90 0.42 -4.19 16 11 C 0.17 2.94 5.94 -82.01 -0.49 2.45 16 12 C -0.05 -0.94 3.38 -89.62 -0.30 -1.25 16 13 H 0.12 2.55 5.73 -51.93 -0.30 2.26 16 14 C -0.13 -2.77 6.41 -24.87 -0.16 -2.92 16 15 C 0.18 4.71 5.37 -3.04 -0.02 4.70 16 16 N -0.60 -16.70 3.39 -170.04 -0.58 -17.27 16 17 C -0.22 -6.58 10.28 -15.06 -0.15 -6.74 16 18 H 0.08 2.22 7.83 -52.48 -0.41 1.80 16 19 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 20 N -0.92 -28.25 10.31 55.49 0.57 -27.68 16 21 Si 0.91 23.00 29.55 -169.99 -5.02 17.98 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 24 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 25 C 0.15 3.53 6.69 -2.53 -0.02 3.51 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.19 1.00 8.06 -52.49 -0.42 0.57 16 32 H 0.06 1.26 7.92 -51.93 -0.41 0.84 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.05 1.35 7.38 -51.93 -0.38 0.97 16 35 H 0.04 1.25 7.51 -51.93 -0.39 0.86 16 36 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.04 0.87 8.14 -51.92 -0.42 0.45 16 38 H 0.02 0.57 7.88 -51.93 -0.41 0.17 16 LS Contribution 321.17 15.07 4.84 4.84 Total: -1.00 -35.96 321.17 -7.88 -43.84 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: -6.46 Total: -3.01 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: -1.19 Total: 4.39 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: 0.64 Total: -53.78 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: -0.69 Total: -14.26 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.02 Total: 17.98 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -35.96 -7.88 -43.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931008487.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.931 kcal (2) G-P(sol) polarization free energy of solvation -35.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds