Wall clock time and date at job start Tue Mar 31 2020 01:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45199 * 109.47382 * 2 1 4 4 C 1.34755 * 116.99788 * 180.02562 * 3 2 1 5 5 O 1.21516 * 120.00308 * 0.02562 * 4 3 2 6 6 C 1.47291 * 119.99518 * 180.02562 * 4 3 2 7 7 C 1.38124 * 126.42904 * 359.97438 * 6 4 3 8 8 N 1.34228 * 107.40719 * 180.28663 * 7 6 4 9 9 H 0.96992 * 125.74226 * 179.73682 * 8 7 6 10 10 N 1.39933 * 108.51218 * 359.57833 * 8 7 6 11 11 C 1.30429 * 108.91863 * 0.43017 * 10 8 7 12 12 C 1.50699 * 125.99280 * 179.72278 * 11 10 8 13 13 H 1.09001 * 110.88737 * 180.72848 * 12 11 10 14 14 C 1.55155 * 111.00414 * 56.84653 * 12 11 10 15 15 C 1.54372 * 102.91963 * 206.45329 * 14 12 11 16 16 N 1.47020 * 107.28975 * 22.13662 * 15 14 12 17 17 C 1.36944 * 125.65010 * 181.12631 * 16 15 14 18 18 H 1.08003 * 119.99686 * 179.97438 * 17 16 15 19 19 C 1.38806 * 119.99830 * 359.96080 * 17 16 15 20 20 N 1.31617 * 119.99997 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00029 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47064 * 359.97438 * 21 19 17 23 23 H 1.48492 * 109.47411 * 120.00059 * 21 19 17 24 24 H 1.48508 * 109.46811 * 240.00124 * 21 19 17 25 25 C 1.47420 * 108.70283 * 1.09294 * 16 15 14 26 26 H 1.09000 * 109.47432 * 299.99828 * 1 2 3 27 27 H 1.08998 * 109.47399 * 59.99722 * 1 2 3 28 28 H 1.08997 * 109.47367 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46812 * 239.99738 * 2 1 3 30 30 H 1.09003 * 109.47259 * 120.00755 * 2 1 3 31 31 H 1.08002 * 126.29296 * 0.02562 * 7 6 4 32 32 H 1.09001 * 110.72046 * 324.78266 * 14 12 11 33 33 H 1.08993 * 110.71813 * 88.06049 * 14 12 11 34 34 H 1.08997 * 109.84562 * 262.72893 * 15 14 12 35 35 H 1.09001 * 109.90204 * 141.57251 * 15 14 12 36 36 H 0.97006 * 120.00215 * 179.97438 * 20 19 17 37 37 H 1.09008 * 110.37058 * 217.02971 * 25 16 15 38 38 H 1.09006 * 110.46318 * 94.75412 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3499 1.5454 -0.0005 5 8 4.0901 0.5817 -0.0015 6 6 3.9129 2.9065 0.0000 7 6 3.1995 4.0892 0.0005 8 7 4.0887 5.0946 -0.0055 9 1 3.8744 6.0405 -0.0102 10 7 5.3770 4.5483 -0.0002 11 6 5.2847 3.2473 -0.0004 12 6 6.4382 2.2775 -0.0014 13 1 6.0804 1.2480 -0.0143 14 6 7.3745 2.5257 1.2106 15 6 8.7360 1.9993 0.7085 16 7 8.6958 2.0156 -0.7611 17 6 9.7032 1.6028 -1.5918 18 1 9.5752 1.6546 -2.6630 19 6 10.8889 1.1181 -1.0571 20 7 11.0451 1.0557 0.2483 21 14 12.2634 0.5557 -2.1901 22 1 11.8412 0.7272 -3.6035 23 1 13.4796 1.3683 -1.9342 24 1 12.5617 -0.8763 -1.9335 25 6 7.3909 2.5491 -1.1924 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5140 0.8899 31 1 2.1239 4.1869 0.0010 32 1 7.4338 3.5896 1.4406 33 1 7.0384 1.9603 2.0797 34 1 8.8928 0.9808 1.0637 35 1 9.5381 2.6459 1.0645 36 1 11.8735 0.7166 0.6220 37 1 7.0430 2.0264 -2.0834 38 1 7.4617 3.6197 -1.3849 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931008487.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:56 Heat of formation + Delta-G solvation = -13.799637 kcal Electronic energy + Delta-G solvation = -21698.156563 eV Core-core repulsion = 18349.088002 eV Total energy + Delta-G solvation = -3349.068561 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.55562 -40.89947 -39.10588 -37.47612 -34.96025 -33.01839 -32.76169 -31.30405 -31.00239 -29.25577 -26.65991 -25.25744 -23.74461 -23.20096 -21.99642 -21.49717 -20.30181 -19.29247 -18.84504 -18.25311 -17.48198 -16.83567 -16.78689 -16.36792 -15.82861 -15.80630 -15.00965 -14.80473 -14.44921 -14.11347 -13.95971 -13.71046 -13.56637 -13.46459 -12.88677 -12.82429 -12.74738 -12.43691 -12.39545 -12.14728 -11.98046 -11.88621 -11.81623 -11.67062 -11.43755 -11.06641 -10.72151 -10.50470 -9.96004 -8.91511 -7.84415 -5.21306 0.39936 0.93715 1.45486 1.48101 1.58463 1.59351 1.96482 2.14974 2.50149 3.31565 3.36879 3.57875 3.78255 3.98293 4.09509 4.10367 4.14439 4.18055 4.33217 4.38707 4.45867 4.52817 4.66990 4.77698 4.92074 4.97743 4.98172 5.01473 5.18915 5.23325 5.35369 5.43161 5.57789 5.64403 5.73338 6.18304 6.28638 6.50946 6.89374 7.09237 7.75004 8.41544 9.26694 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.022516 B = 0.004209 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.244593 B = 6651.142787 C = 7388.316220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.053 3.947 3 O -0.350 6.350 4 C 0.543 3.457 5 O -0.547 6.547 6 C -0.314 4.314 7 C 0.176 3.824 8 N -0.440 5.440 9 H 0.465 0.535 10 N -0.316 5.316 11 C 0.147 3.853 12 C -0.030 4.030 13 H 0.100 0.900 14 C -0.114 4.114 15 C 0.189 3.811 16 N -0.626 5.626 17 C -0.246 4.246 18 H 0.082 0.918 19 C -0.067 4.067 20 N -0.952 5.952 21 Si 0.985 3.015 22 H -0.265 1.265 23 H -0.289 1.289 24 H -0.290 1.290 25 C 0.152 3.848 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.095 0.905 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.249 0.751 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.013 0.987 35 H 0.012 0.988 36 H 0.248 0.752 37 H 0.035 0.965 38 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.031 6.166 0.927 26.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.020 4.020 3 O -0.267 6.267 4 C 0.390 3.610 5 O -0.438 6.438 6 C -0.327 4.327 7 C 0.020 3.980 8 N -0.145 5.145 9 H 0.315 0.685 10 N -0.138 5.138 11 C -0.021 4.021 12 C -0.051 4.051 13 H 0.118 0.882 14 C -0.153 4.153 15 C 0.064 3.936 16 N -0.353 5.353 17 C -0.375 4.375 18 H 0.100 0.900 19 C -0.260 4.260 20 N -0.601 5.601 21 Si 0.812 3.188 22 H -0.190 1.190 23 H -0.216 1.216 24 H -0.217 1.217 25 C 0.026 3.974 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.114 0.886 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.265 0.735 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.032 0.968 35 H 0.030 0.970 36 H 0.057 0.943 37 H 0.053 0.947 38 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -24.855 6.814 0.923 25.789 hybrid contribution 0.701 -0.916 -0.343 1.203 sum -24.154 5.898 0.580 24.870 Atomic orbital electron populations 1.21798 0.89765 1.04290 1.04006 1.23270 0.97251 0.79250 1.02259 1.86488 1.22364 1.33415 1.84428 1.20186 0.80712 0.88484 0.71635 1.90833 1.60989 1.43385 1.48620 1.19455 0.92500 0.91843 1.28914 1.23925 0.98793 0.85089 0.90161 1.46238 1.03036 1.10528 1.54738 0.68526 1.77256 1.00890 1.09028 1.26608 1.21978 0.93519 0.91544 0.95019 1.20928 0.90199 0.97297 0.96720 0.88169 1.22744 0.94712 1.01060 0.96761 1.20888 0.92480 0.97130 0.83081 1.44783 1.13222 1.74646 1.02611 1.19532 0.93281 1.34950 0.89723 0.89978 1.25731 1.00571 1.02041 0.97678 1.70213 1.26184 1.52787 1.10887 0.84920 0.78497 0.77120 0.78222 1.18956 1.21596 1.21676 1.21567 0.84808 0.96127 0.94903 0.90786 0.90877 0.88616 0.91965 0.91813 0.73473 0.91157 0.90510 0.96834 0.97006 0.94289 0.94659 0.95620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 10.29 71.98 0.74 -0.69 16 2 C 0.05 0.98 6.20 71.98 0.45 1.43 16 3 O -0.35 -7.62 10.05 -56.66 -0.57 -8.19 16 4 C 0.54 15.93 7.95 70.20 0.56 16.49 16 5 O -0.55 -20.71 14.40 19.78 0.28 -20.42 16 6 C -0.31 -8.48 6.13 -20.16 -0.12 -8.60 16 7 C 0.18 2.65 11.86 84.30 1.00 3.65 16 8 N -0.44 -7.44 7.28 -56.28 -0.41 -7.85 16 9 H 0.47 3.60 8.96 -213.44 -1.91 1.69 16 10 N -0.32 -9.57 12.32 -46.65 -0.57 -10.14 16 11 C 0.15 5.01 5.94 43.53 0.26 5.27 16 12 C -0.03 -1.28 3.38 -10.15 -0.03 -1.31 16 13 H 0.10 4.58 5.73 -2.39 -0.01 4.57 16 14 C -0.11 -4.97 6.41 31.80 0.20 -4.76 16 15 C 0.19 10.47 5.37 86.75 0.47 10.94 16 16 N -0.63 -36.06 3.39 -691.89 -2.35 -38.41 16 17 C -0.25 -14.98 10.28 84.03 0.86 -14.12 16 18 H 0.08 4.77 7.83 -2.91 -0.02 4.75 16 19 C -0.07 -4.09 5.49 84.86 0.47 -3.62 16 20 N -0.95 -60.62 10.31 21.65 0.22 -60.40 16 21 Si 0.98 48.25 29.55 68.60 2.03 50.28 16 22 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 23 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 24 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 25 C 0.15 7.31 6.69 86.86 0.58 7.89 16 26 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.25 0.80 8.06 -2.91 -0.02 0.77 16 32 H 0.07 2.92 7.92 -2.39 -0.02 2.90 16 33 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 34 H 0.01 0.82 7.38 -2.39 -0.02 0.80 16 35 H 0.01 0.71 7.51 -2.39 -0.02 0.69 16 36 H 0.25 15.17 8.31 -92.70 -0.77 14.40 16 37 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 38 H 0.03 1.24 7.88 -2.38 -0.02 1.22 16 Total: -1.00 -83.07 321.17 3.23 -79.84 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -0.83 Total: 2.73 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: 5.43 Total: 12.56 kcal Atomic # 7 Polarization: -113.69 SS G_CDS: -3.11 Total: -116.80 kcal Atomic # 8 Polarization: -28.33 SS G_CDS: -0.28 Total: -28.62 kcal Atomic # 14 Polarization: 48.25 SS G_CDS: 2.03 Total: 50.28 kcal Total: -83.07 3.23 -79.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931008487.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.041 kcal (2) G-P(sol) polarization free energy of solvation -83.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds