Wall clock time and date at job start Tue Mar 31 2020 01:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36932 * 119.99929 * 2 1 4 4 H 1.08010 * 120.00029 * 160.57289 * 3 2 1 5 5 C 1.38810 * 120.00209 * 340.29980 * 3 2 1 6 6 N 1.31618 * 119.99547 * 347.08693 * 5 3 2 7 7 Si 1.86799 * 120.00238 * 167.09517 * 5 3 2 8 8 H 1.48497 * 109.47041 * 359.97438 * 7 5 3 9 9 H 1.48502 * 109.47458 * 119.99917 * 7 5 3 10 10 H 1.48508 * 109.46841 * 239.99819 * 7 5 3 11 11 C 1.46502 * 119.99736 * 179.97438 * 2 1 3 12 12 H 1.09005 * 110.63637 * 179.30079 * 11 2 1 13 13 C 1.55163 * 110.71906 * 56.16330 * 11 2 1 14 14 C 1.54906 * 101.58101 * 206.13047 * 13 11 2 15 15 N 1.47431 * 104.83378 * 37.00867 * 14 13 11 16 16 C 1.34769 * 125.65175 * 155.83796 * 15 14 13 17 17 O 1.21277 * 120.00233 * 180.02562 * 16 15 14 18 18 C 1.50698 * 120.00000 * 0.02562 * 16 15 14 19 19 C 1.50701 * 109.47299 * 180.02562 * 18 16 15 20 20 C 1.41373 * 128.00790 * 90.00139 * 19 18 16 21 21 N 1.30168 * 106.39724 * 179.97438 * 20 19 18 22 22 O 1.20919 * 111.60521 * 359.97438 * 21 20 19 23 23 C 1.34043 * 111.56470 * 359.76678 * 22 21 20 24 24 C 1.47322 * 108.73320 * 335.71167 * 15 14 13 25 25 H 1.08993 * 109.46950 * 84.81740 * 1 2 3 26 26 H 1.09005 * 109.47249 * 204.82019 * 1 2 3 27 27 H 1.09004 * 109.47190 * 324.81634 * 1 2 3 28 28 H 0.97007 * 120.00060 * 179.97438 * 6 5 3 29 29 H 1.08998 * 111.00405 * 324.20536 * 13 11 2 30 30 H 1.08999 * 111.00094 * 88.05511 * 13 11 2 31 31 H 1.08997 * 110.37183 * 155.84600 * 14 13 11 32 32 H 1.08999 * 110.36894 * 278.06059 * 14 13 11 33 33 H 1.09002 * 109.47146 * 300.00709 * 18 16 15 34 34 H 1.09003 * 109.47273 * 60.00201 * 18 16 15 35 35 H 1.08000 * 126.80023 * 359.94114 * 20 19 18 36 36 H 1.08006 * 126.77547 * 180.28559 * 23 22 21 37 37 H 1.08996 * 110.06593 * 241.87183 * 24 15 14 38 38 H 1.09004 * 109.84793 * 120.60758 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1836 1.2125 0.3111 5 6 1.5166 2.3528 -0.4052 6 7 0.3568 2.2913 -1.0244 7 14 2.3107 4.0104 -0.0720 8 1 3.6018 3.8079 0.6330 9 1 2.5534 4.7108 -1.3588 10 1 1.4078 4.8304 0.7753 11 6 2.1974 -1.2688 0.0006 12 1 3.2729 -1.0915 -0.0120 13 6 1.7720 -2.1487 -1.2045 14 6 2.0755 -3.5717 -0.6730 15 7 1.7185 -3.5247 0.7567 16 6 1.3767 -4.5843 1.5162 17 8 1.1006 -4.4275 2.6867 18 6 1.3378 -5.9639 0.9112 19 6 0.9293 -6.9625 1.9633 20 6 -0.3761 -7.3895 2.2981 21 7 -0.2438 -8.2564 3.2601 22 8 0.9173 -8.4197 3.5557 23 6 1.7285 -7.6636 2.8026 24 6 1.7999 -2.1283 1.2190 25 1 -0.3633 0.0928 -1.0234 26 1 -0.3634 -0.9328 0.4314 27 1 -0.3634 0.8399 0.5922 28 1 -0.0859 3.1068 -1.3073 29 1 0.7100 -2.0302 -1.4192 30 1 2.3745 -1.9236 -2.0845 31 1 1.4639 -4.3093 -1.1926 32 1 3.1335 -3.8043 -0.7940 33 1 0.6166 -5.9820 0.0940 34 1 2.3258 -6.2213 0.5295 35 1 -1.3002 -7.0611 1.8458 36 1 2.8063 -7.6205 2.8559 37 1 2.5549 -2.0363 1.9998 38 1 0.8300 -1.8070 1.5986 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972150182.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:10 Heat of formation + Delta-G solvation = 62.493527 kcal Electronic energy + Delta-G solvation = -21571.731716 eV Core-core repulsion = 18225.971475 eV Total energy + Delta-G solvation = -3345.760241 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -45.04547 -39.84896 -37.57347 -34.86286 -34.68214 -32.31336 -31.68881 -29.93853 -29.22482 -27.50801 -26.09448 -23.81905 -23.03078 -22.37207 -21.74254 -19.37362 -19.10680 -17.97048 -17.68601 -17.10372 -16.85547 -16.06432 -15.34121 -15.14013 -14.69686 -14.23815 -13.63660 -13.45067 -13.40495 -13.11064 -12.79094 -12.50011 -12.37925 -12.21348 -11.78374 -11.45385 -11.36919 -10.99980 -10.83438 -10.64286 -10.49127 -10.46599 -10.27889 -9.95649 -9.90617 -9.86436 -9.44540 -8.62242 -8.40577 -6.90163 -5.80089 -3.24939 1.37002 2.09361 2.72087 3.06615 3.24935 3.34115 3.41999 3.43533 4.14176 4.42778 4.53405 4.56759 4.69308 4.94617 4.97651 5.17490 5.22622 5.29374 5.47416 5.48352 5.50217 5.53534 5.70441 5.83466 5.87539 5.94600 6.24890 6.32903 6.48581 6.58632 6.75150 6.80871 7.34894 7.64470 7.71528 7.75321 8.11423 8.26801 8.30922 9.14753 9.77396 10.24344 11.24867 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.043962 B = 0.003256 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.756553 B = 8596.615019 C = 8673.075085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.588 5.588 3 C -0.259 4.259 4 H 0.072 0.928 5 C 0.003 3.997 6 N -0.907 5.907 7 Si 0.907 3.093 8 H -0.278 1.278 9 H -0.290 1.290 10 H -0.289 1.289 11 C 0.173 3.827 12 H 0.079 0.921 13 C -0.151 4.151 14 C 0.098 3.902 15 N -0.612 5.612 16 C 0.523 3.477 17 O -0.540 6.540 18 C -0.060 4.060 19 C -0.182 4.182 20 C 0.005 3.995 21 N -0.368 5.368 22 O 0.095 5.905 23 C -0.047 4.047 24 C 0.087 3.913 25 H 0.031 0.969 26 H -0.001 1.001 27 H 0.046 0.954 28 H 0.253 0.747 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.188 0.812 36 H 0.215 0.785 37 H 0.061 0.939 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.831 -18.010 -0.090 18.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.308 5.308 3 C -0.389 4.389 4 H 0.090 0.910 5 C -0.196 4.196 6 N -0.551 5.551 7 Si 0.737 3.263 8 H -0.203 1.203 9 H -0.217 1.217 10 H -0.216 1.216 11 C 0.062 3.938 12 H 0.097 0.903 13 C -0.192 4.192 14 C -0.025 4.025 15 N -0.347 5.347 16 C 0.310 3.690 17 O -0.418 6.418 18 C -0.100 4.100 19 C -0.186 4.186 20 C -0.174 4.174 21 N -0.072 5.072 22 O 0.031 5.969 23 C -0.129 4.129 24 C -0.037 4.037 25 H 0.049 0.951 26 H 0.018 0.982 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.205 0.795 36 H 0.231 0.769 37 H 0.079 0.921 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.678 -18.535 1.260 18.770 hybrid contribution 0.664 1.642 -0.619 1.876 sum 3.342 -16.893 0.642 17.233 Atomic orbital electron populations 1.20806 0.82257 0.95640 0.99537 1.43910 1.01991 0.99905 1.85031 1.19297 0.96536 0.84755 1.38273 0.91012 1.24970 0.97537 0.98456 0.98604 1.70102 1.17016 1.26701 1.41328 0.86151 0.78619 0.84036 0.77510 1.20280 1.21716 1.21569 1.21293 0.96379 0.86004 0.90135 0.90313 1.23378 1.02909 0.92654 1.00226 1.22392 0.99807 0.99540 0.80784 1.48599 1.66980 1.07820 1.11269 1.20071 0.77443 0.85268 0.86195 1.90724 1.49038 1.85617 1.16387 1.19877 1.04322 0.89618 0.96201 1.20771 0.92925 1.02274 1.02634 1.24917 0.99618 0.96532 0.96354 1.73842 0.97954 1.19348 1.16053 1.84795 1.11690 1.51741 1.48670 1.25745 0.99073 0.94883 0.93153 1.22853 1.02256 0.79261 0.99349 0.95082 0.98220 0.93485 0.93718 0.90561 0.90286 0.91266 0.91469 0.87501 0.87582 0.79464 0.76859 0.92089 0.90939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.86 7.54 59.85 0.45 4.31 16 2 N -0.59 -13.95 2.94 -171.38 -0.50 -14.45 16 3 C -0.26 -6.82 9.65 -15.06 -0.15 -6.97 16 4 H 0.07 1.83 7.82 -52.48 -0.41 1.42 16 5 C 0.00 0.07 5.11 -17.43 -0.09 -0.02 16 6 N -0.91 -25.61 10.51 55.49 0.58 -25.03 16 7 Si 0.91 21.30 29.57 -169.99 -5.03 16.27 16 8 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 9 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 C 0.17 3.22 3.43 -66.09 -0.23 3.00 16 12 H 0.08 1.45 7.91 -51.93 -0.41 1.03 16 13 C -0.15 -2.32 6.64 -24.58 -0.16 -2.48 16 14 C 0.10 1.13 6.69 -2.53 -0.02 1.11 16 15 N -0.61 -8.87 3.33 -170.28 -0.57 -9.44 16 16 C 0.52 7.50 7.84 -10.99 -0.09 7.42 16 17 O -0.54 -10.15 16.36 5.56 0.09 -10.06 16 18 C -0.06 -0.56 5.29 -29.03 -0.15 -0.71 16 19 C -0.18 -1.95 4.82 -104.43 -0.50 -2.45 16 20 C 0.00 0.06 12.16 -17.06 -0.21 -0.15 16 21 N -0.37 -4.83 12.07 30.35 0.37 -4.46 16 22 O 0.10 1.11 11.20 17.17 0.19 1.31 16 23 C -0.05 -0.44 12.26 29.74 0.36 -0.08 16 24 C 0.09 1.54 6.41 -2.90 -0.02 1.52 16 25 H 0.03 0.79 7.42 -51.93 -0.39 0.41 16 26 H 0.00 -0.01 6.45 -51.93 -0.34 -0.35 16 27 H 0.05 1.23 7.11 -51.93 -0.37 0.86 16 28 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 29 H 0.08 1.29 7.19 -51.93 -0.37 0.92 16 30 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 31 H 0.07 0.62 7.47 -51.93 -0.39 0.23 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.11 0.80 7.85 -51.93 -0.41 0.40 16 34 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.19 1.78 8.06 -52.49 -0.42 1.35 16 36 H 0.21 1.16 8.06 -52.48 -0.42 0.74 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.07 1.47 6.30 -51.93 -0.33 1.14 16 LS Contribution 317.68 15.07 4.79 4.79 Total: -1.00 -32.84 317.68 -5.95 -38.79 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: -5.08 Total: -2.22 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: -0.79 Total: 4.50 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: -0.12 Total: -53.38 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.28 Total: -8.75 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.84 -5.95 -38.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972150182.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.289 kcal (2) G-P(sol) polarization free energy of solvation -32.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds