Wall clock time and date at job start Tue Mar 31 2020 01:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36932 * 119.99929 * 2 1 4 4 H 1.08010 * 120.00029 * 160.57289 * 3 2 1 5 5 C 1.38810 * 120.00209 * 340.29980 * 3 2 1 6 6 N 1.31618 * 119.99547 * 347.08693 * 5 3 2 7 7 Si 1.86799 * 120.00238 * 167.09517 * 5 3 2 8 8 H 1.48497 * 109.47041 * 359.97438 * 7 5 3 9 9 H 1.48502 * 109.47458 * 119.99917 * 7 5 3 10 10 H 1.48508 * 109.46841 * 239.99819 * 7 5 3 11 11 C 1.46502 * 119.99736 * 179.97438 * 2 1 3 12 12 H 1.09005 * 110.63637 * 179.30079 * 11 2 1 13 13 C 1.55163 * 110.71906 * 56.16330 * 11 2 1 14 14 C 1.54906 * 101.58101 * 206.13047 * 13 11 2 15 15 N 1.47431 * 104.83378 * 37.00867 * 14 13 11 16 16 C 1.34769 * 125.65175 * 155.83796 * 15 14 13 17 17 O 1.21277 * 120.00233 * 180.02562 * 16 15 14 18 18 C 1.50698 * 120.00000 * 0.02562 * 16 15 14 19 19 C 1.50701 * 109.47299 * 180.02562 * 18 16 15 20 20 C 1.41373 * 128.00790 * 90.00139 * 19 18 16 21 21 N 1.30168 * 106.39724 * 179.97438 * 20 19 18 22 22 O 1.20919 * 111.60521 * 359.97438 * 21 20 19 23 23 C 1.34043 * 111.56470 * 359.76678 * 22 21 20 24 24 C 1.47322 * 108.73320 * 335.71167 * 15 14 13 25 25 H 1.08993 * 109.46950 * 84.81740 * 1 2 3 26 26 H 1.09005 * 109.47249 * 204.82019 * 1 2 3 27 27 H 1.09004 * 109.47190 * 324.81634 * 1 2 3 28 28 H 0.97007 * 120.00060 * 179.97438 * 6 5 3 29 29 H 1.08998 * 111.00405 * 324.20536 * 13 11 2 30 30 H 1.08999 * 111.00094 * 88.05511 * 13 11 2 31 31 H 1.08997 * 110.37183 * 155.84600 * 14 13 11 32 32 H 1.08999 * 110.36894 * 278.06059 * 14 13 11 33 33 H 1.09002 * 109.47146 * 300.00709 * 18 16 15 34 34 H 1.09003 * 109.47273 * 60.00201 * 18 16 15 35 35 H 1.08000 * 126.80023 * 359.94114 * 20 19 18 36 36 H 1.08006 * 126.77547 * 180.28559 * 23 22 21 37 37 H 1.08996 * 110.06593 * 241.87183 * 24 15 14 38 38 H 1.09004 * 109.84793 * 120.60758 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1836 1.2125 0.3111 5 6 1.5166 2.3528 -0.4052 6 7 0.3568 2.2913 -1.0244 7 14 2.3107 4.0104 -0.0720 8 1 3.6018 3.8079 0.6330 9 1 2.5534 4.7108 -1.3588 10 1 1.4078 4.8304 0.7753 11 6 2.1974 -1.2688 0.0006 12 1 3.2729 -1.0915 -0.0120 13 6 1.7720 -2.1487 -1.2045 14 6 2.0755 -3.5717 -0.6730 15 7 1.7185 -3.5247 0.7567 16 6 1.3767 -4.5843 1.5162 17 8 1.1006 -4.4275 2.6867 18 6 1.3378 -5.9639 0.9112 19 6 0.9293 -6.9625 1.9633 20 6 -0.3761 -7.3895 2.2981 21 7 -0.2438 -8.2564 3.2601 22 8 0.9173 -8.4197 3.5557 23 6 1.7285 -7.6636 2.8026 24 6 1.7999 -2.1283 1.2190 25 1 -0.3633 0.0928 -1.0234 26 1 -0.3634 -0.9328 0.4314 27 1 -0.3634 0.8399 0.5922 28 1 -0.0859 3.1068 -1.3073 29 1 0.7100 -2.0302 -1.4192 30 1 2.3745 -1.9236 -2.0845 31 1 1.4639 -4.3093 -1.1926 32 1 3.1335 -3.8043 -0.7940 33 1 0.6166 -5.9820 0.0940 34 1 2.3258 -6.2213 0.5295 35 1 -1.3002 -7.0611 1.8458 36 1 2.8063 -7.6205 2.8559 37 1 2.5549 -2.0363 1.9998 38 1 0.8300 -1.8070 1.5986 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972150182.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:10 Heat of formation + Delta-G solvation = 40.613033 kcal Electronic energy + Delta-G solvation = -21572.680525 eV Core-core repulsion = 18225.971475 eV Total energy + Delta-G solvation = -3346.709050 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -45.87360 -41.03175 -38.93847 -36.53439 -35.52911 -33.52393 -33.04249 -31.37397 -30.24005 -28.76879 -28.08054 -25.27956 -23.97643 -23.73641 -22.61692 -20.87287 -20.19407 -18.95784 -18.75457 -18.57931 -17.96516 -17.47080 -16.64507 -16.36858 -15.88153 -15.56999 -15.08296 -14.92327 -14.49234 -14.35555 -14.09971 -13.85325 -13.59788 -13.22284 -13.02006 -12.94412 -12.84403 -12.51933 -12.37250 -12.23533 -12.14662 -12.03500 -11.80292 -11.43969 -11.35449 -10.97754 -10.64992 -10.30849 -9.60673 -8.84726 -7.84035 -5.29807 0.61385 1.24886 1.46722 1.49412 1.58687 1.66072 2.09643 2.44590 2.52153 3.29526 3.38004 3.58303 3.65684 3.80808 3.90357 3.94848 4.16538 4.26144 4.31023 4.40105 4.51550 4.59113 4.71765 4.76062 4.81012 4.83151 4.95405 5.05397 5.13228 5.20846 5.29737 5.37892 5.43912 5.62862 5.70563 6.29760 6.62318 7.12621 7.19316 7.32529 7.84448 8.27553 9.19962 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.043962 B = 0.003256 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.756553 B = 8596.615019 C = 8673.075085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.185 3.815 2 N -0.605 5.605 3 C -0.263 4.263 4 H 0.077 0.923 5 C -0.053 4.053 6 N -0.938 5.938 7 Si 0.968 3.032 8 H -0.265 1.265 9 H -0.291 1.291 10 H -0.296 1.296 11 C 0.164 3.836 12 H 0.084 0.916 13 C -0.145 4.145 14 C 0.107 3.893 15 N -0.613 5.613 16 C 0.519 3.481 17 O -0.593 6.593 18 C -0.045 4.045 19 C -0.200 4.200 20 C -0.008 4.008 21 N -0.402 5.402 22 O 0.083 5.917 23 C -0.035 4.035 24 C 0.099 3.901 25 H 0.010 0.990 26 H 0.019 0.981 27 H 0.013 0.987 28 H 0.247 0.753 29 H 0.056 0.944 30 H 0.089 0.911 31 H 0.109 0.891 32 H 0.100 0.900 33 H 0.133 0.867 34 H 0.148 0.852 35 H 0.200 0.800 36 H 0.254 0.746 37 H 0.053 0.947 38 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.819 -19.898 -1.182 20.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.327 5.327 3 C -0.393 4.393 4 H 0.095 0.905 5 C -0.248 4.248 6 N -0.585 5.585 7 Si 0.797 3.203 8 H -0.190 1.190 9 H -0.218 1.218 10 H -0.223 1.223 11 C 0.055 3.945 12 H 0.102 0.898 13 C -0.185 4.185 14 C -0.015 4.015 15 N -0.346 5.346 16 C 0.310 3.690 17 O -0.474 6.474 18 C -0.085 4.085 19 C -0.205 4.205 20 C -0.186 4.186 21 N -0.108 5.108 22 O 0.021 5.979 23 C -0.117 4.117 24 C -0.027 4.027 25 H 0.028 0.972 26 H 0.037 0.963 27 H 0.031 0.969 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.107 0.893 31 H 0.127 0.873 32 H 0.119 0.881 33 H 0.151 0.849 34 H 0.165 0.835 35 H 0.217 0.783 36 H 0.270 0.730 37 H 0.071 0.929 38 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 4.710 -20.481 0.150 21.016 hybrid contribution 0.082 2.179 -0.229 2.193 sum 4.792 -18.302 -0.079 18.919 Atomic orbital electron populations 1.20415 0.82958 0.95057 0.97604 1.44076 1.01910 1.01249 1.85450 1.19652 0.96778 0.85971 1.36930 0.90493 1.25705 0.98296 1.01591 0.99205 1.70253 1.18424 1.26941 1.42889 0.85184 0.78024 0.80071 0.77031 1.18960 1.21784 1.22344 1.21513 0.96132 0.84660 0.92179 0.89833 1.23224 1.01743 0.94525 0.98966 1.22577 1.02641 0.97632 0.78600 1.48669 1.67016 1.06334 1.12622 1.21028 0.75721 0.86745 0.85535 1.90709 1.51213 1.86543 1.18962 1.19942 1.07398 0.85289 0.95840 1.21029 0.92514 1.03150 1.03783 1.25338 1.00994 0.96217 0.96056 1.73836 0.98866 1.20831 1.17306 1.84755 1.11633 1.52326 1.49176 1.26541 1.00489 0.93163 0.91479 1.22410 1.00067 0.81653 0.98559 0.97219 0.96299 0.96864 0.94343 0.92538 0.89288 0.87310 0.88149 0.84905 0.83472 0.78282 0.73016 0.92888 0.94222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.09 7.54 127.77 0.96 10.06 16 2 N -0.61 -29.01 2.94 -696.13 -2.05 -31.06 16 3 C -0.26 -13.94 9.65 84.03 0.81 -13.13 16 4 H 0.08 3.90 7.82 -2.91 -0.02 3.88 16 5 C -0.05 -2.91 5.11 84.86 0.43 -2.47 16 6 N -0.94 -54.45 10.51 21.65 0.23 -54.22 16 7 Si 0.97 44.27 29.57 68.60 2.03 46.30 16 8 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 9 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 10 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 11 C 0.16 5.95 3.43 46.18 0.16 6.10 16 12 H 0.08 2.94 7.91 -2.38 -0.02 2.92 16 13 C -0.14 -4.07 6.64 31.99 0.21 -3.85 16 14 C 0.11 1.95 6.69 86.85 0.58 2.53 16 15 N -0.61 -15.97 3.33 -811.05 -2.70 -18.68 16 16 C 0.52 13.43 7.84 87.66 0.69 14.12 16 17 O -0.59 -21.74 16.36 -3.02 -0.05 -21.79 16 18 C -0.05 -0.63 5.29 29.10 0.15 -0.48 16 19 C -0.20 -3.70 4.82 -19.74 -0.10 -3.79 16 20 C -0.01 -0.17 12.16 85.71 1.04 0.88 16 21 N -0.40 -10.29 12.07 -59.29 -0.72 -11.01 16 22 O 0.08 1.84 11.20 71.61 0.80 2.64 16 23 C -0.04 -0.57 12.26 67.17 0.82 0.25 16 24 C 0.10 3.43 6.41 86.67 0.56 3.98 16 25 H 0.01 0.51 7.42 -2.39 -0.02 0.49 16 26 H 0.02 0.83 6.45 -2.38 -0.02 0.81 16 27 H 0.01 0.70 7.11 -2.39 -0.02 0.68 16 28 H 0.25 13.99 8.31 -92.70 -0.77 13.22 16 29 H 0.06 1.83 7.19 -2.39 -0.02 1.81 16 30 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.11 1.24 7.47 -2.39 -0.02 1.22 16 32 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.13 1.25 7.85 -2.39 -0.02 1.23 16 34 H 0.15 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.20 3.56 8.06 -2.91 -0.02 3.53 16 36 H 0.25 1.65 8.06 -2.91 -0.02 1.63 16 37 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.04 1.63 6.30 -2.39 -0.02 1.62 16 Total: -1.00 -75.47 317.68 4.94 -70.53 By element: Atomic # 1 Polarization: 2.02 SS G_CDS: 1.07 Total: 3.09 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: 6.33 Total: 14.19 kcal Atomic # 7 Polarization: -109.73 SS G_CDS: -5.24 Total: -114.96 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: 0.75 Total: -19.15 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -75.47 4.94 -70.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972150182.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.142 kcal (2) G-P(sol) polarization free energy of solvation -75.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds