Wall clock time and date at job start Tue Mar 31 2020 01:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36941 * 119.99545 * 2 1 4 4 H 1.08002 * 119.99469 * 204.29106 * 3 2 1 5 5 C 1.38810 * 120.00345 * 24.29012 * 3 2 1 6 6 N 1.31619 * 119.99879 * 10.98744 * 5 3 2 7 7 Si 1.86804 * 120.00001 * 190.98470 * 5 3 2 8 8 H 1.48502 * 109.47200 * 89.99911 * 7 5 3 9 9 H 1.48501 * 109.47036 * 210.00100 * 7 5 3 10 10 H 1.48503 * 109.46843 * 330.00114 * 7 5 3 11 11 C 1.46497 * 120.00095 * 179.97438 * 2 1 3 12 12 C 1.53038 * 109.46093 * 299.99657 * 11 2 1 13 13 C 1.53188 * 109.31381 * 181.37169 * 12 11 2 14 14 N 1.46920 * 108.77805 * 305.36834 * 13 12 11 15 15 C 1.34779 * 120.63310 * 233.58521 * 14 13 12 16 16 O 1.21612 * 120.00070 * 7.22374 * 15 14 13 17 17 C 1.47419 * 119.99879 * 187.22075 * 15 14 13 18 18 C 1.36092 * 126.44656 * 187.17714 * 17 15 14 19 19 O 1.34257 * 106.94761 * 180.02562 * 18 17 15 20 20 C 1.34051 * 108.23053 * 359.97438 * 19 18 17 21 21 N 1.29934 * 109.23814 * 0.02562 * 20 19 18 22 22 C 1.46930 * 118.73617 * 53.85613 * 14 13 12 23 23 C 1.53036 * 109.44966 * 60.06483 * 11 2 1 24 24 H 1.08997 * 109.46846 * 266.70555 * 1 2 3 25 25 H 1.08997 * 109.47238 * 26.70176 * 1 2 3 26 26 H 1.08995 * 109.46954 * 146.70432 * 1 2 3 27 27 H 0.96998 * 119.99793 * 179.97438 * 6 5 3 28 28 H 1.09005 * 109.45510 * 180.02562 * 11 2 1 29 29 H 1.09002 * 109.49656 * 61.42388 * 12 11 2 30 30 H 1.08998 * 109.50089 * 301.32893 * 12 11 2 31 31 H 1.08997 * 109.58835 * 185.58115 * 13 12 11 32 32 H 1.09004 * 109.70353 * 65.22754 * 13 12 11 33 33 H 1.08001 * 126.53053 * 359.97438 * 18 17 15 34 34 H 1.07996 * 125.37981 * 179.97438 * 20 19 18 35 35 H 1.09003 * 109.58471 * 65.93388 * 22 14 13 36 36 H 1.09002 * 109.58686 * 186.34822 * 22 14 13 37 37 H 1.09004 * 109.49582 * 298.56780 * 23 11 2 38 38 H 1.08995 * 109.49996 * 58.66946 * 23 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1579 1.2274 -0.3848 5 6 1.5477 2.3349 0.4945 6 7 0.4136 2.2506 1.1571 7 14 2.3474 4.0006 0.2196 8 1 1.8488 4.5854 -1.0512 9 1 2.0077 4.9049 1.3475 10 1 3.8212 3.8356 0.1439 11 6 2.1975 -1.2687 0.0006 12 6 1.8277 -2.0704 1.2506 13 6 2.6211 -3.3807 1.2652 14 7 2.3846 -4.0909 0.0010 15 6 1.9582 -5.3695 0.0009 16 8 1.6400 -5.9044 1.0457 17 6 1.8775 -6.1195 -1.2657 18 6 1.3421 -7.3587 -1.4388 19 8 1.4745 -7.6639 -2.7395 20 6 2.0772 -6.6353 -3.3524 21 7 2.3245 -5.7033 -2.4815 22 6 2.6274 -3.3827 -1.2633 23 6 1.8287 -2.0706 -1.2496 24 1 -0.3633 -0.0591 1.0260 25 1 -0.3633 0.9180 -0.4618 26 1 -0.3633 -0.8589 -0.5641 27 1 -0.0068 3.0535 1.5030 28 1 3.2692 -1.0692 0.0009 29 1 0.7604 -2.2915 1.2384 30 1 2.0691 -1.4890 2.1404 31 1 2.2897 -3.9993 2.0993 32 1 3.6845 -3.1654 1.3699 33 1 0.8964 -7.9789 -0.6752 34 1 2.3196 -6.5890 -4.4038 35 1 3.6910 -3.1653 -1.3618 36 1 2.3004 -4.0027 -2.0980 37 1 0.7614 -2.2917 -1.2382 38 1 2.0709 -1.4894 -2.1393 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985325247.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:45 Heat of formation + Delta-G solvation = 30.092412 kcal Electronic energy + Delta-G solvation = -22130.317489 eV Core-core repulsion = 18783.152231 eV Total energy + Delta-G solvation = -3347.165259 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.68403 -39.82052 -37.43350 -35.33330 -34.83507 -32.11088 -30.91564 -30.33044 -29.61841 -25.95913 -25.44738 -23.78781 -23.27756 -22.41415 -21.79670 -20.23099 -18.89196 -17.64113 -16.99659 -16.80760 -16.64666 -15.91791 -15.12989 -14.97307 -14.91536 -14.08095 -13.85394 -13.65705 -13.36862 -13.19784 -12.99451 -12.43754 -12.22518 -11.80588 -11.58454 -11.40575 -10.94131 -10.84583 -10.78123 -10.53313 -10.30231 -10.19012 -10.12274 -9.83776 -9.76173 -9.44109 -9.38870 -8.50036 -8.37011 -6.67799 -5.70089 -3.15380 0.92798 1.82544 2.43515 3.07115 3.26629 3.39855 3.46022 3.47424 3.80387 4.50805 4.56066 4.62691 5.23831 5.28446 5.35843 5.38837 5.42914 5.57402 5.61544 5.65934 5.83145 5.92360 6.04339 6.23474 6.35890 6.45496 6.49952 6.61893 6.72083 6.89929 7.06966 7.09419 7.18290 7.44888 7.58007 7.74992 7.84237 8.18703 8.46126 9.28326 9.91749 10.42563 11.36142 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.034790 B = 0.003961 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.639119 B = 7066.666113 C = 7392.549978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.596 5.596 3 C -0.253 4.253 4 H 0.067 0.933 5 C 0.002 3.998 6 N -0.908 5.908 7 Si 0.904 3.096 8 H -0.288 1.288 9 H -0.292 1.292 10 H -0.280 1.280 11 C 0.177 3.823 12 C -0.143 4.143 13 C 0.112 3.888 14 N -0.585 5.585 15 C 0.595 3.405 16 O -0.548 6.548 17 C -0.064 4.064 18 C 0.011 3.989 19 O -0.200 6.200 20 C 0.176 3.824 21 N -0.460 5.460 22 C 0.084 3.916 23 C -0.145 4.145 24 H 0.016 0.984 25 H 0.054 0.946 26 H -0.007 1.007 27 H 0.252 0.748 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.230 0.770 34 H 0.255 0.745 35 H 0.062 0.938 36 H 0.129 0.871 37 H 0.058 0.942 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.132 -18.391 -8.389 20.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.317 5.317 3 C -0.383 4.383 4 H 0.085 0.915 5 C -0.197 4.197 6 N -0.553 5.553 7 Si 0.735 3.265 8 H -0.216 1.216 9 H -0.218 1.218 10 H -0.205 1.205 11 C 0.069 3.931 12 C -0.183 4.183 13 C -0.010 4.010 14 N -0.315 5.315 15 C 0.382 3.618 16 O -0.427 6.427 17 C -0.183 4.183 18 C -0.062 4.062 19 O -0.086 6.086 20 C -0.052 4.052 21 N -0.189 5.189 22 C -0.039 4.039 23 C -0.185 4.185 24 H 0.035 0.965 25 H 0.072 0.928 26 H 0.012 0.988 27 H 0.062 0.938 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.104 0.896 32 H 0.085 0.915 33 H 0.246 0.754 34 H 0.270 0.730 35 H 0.080 0.920 36 H 0.146 0.854 37 H 0.077 0.923 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.153 -17.913 -7.901 19.831 hybrid contribution 0.040 0.560 0.009 0.562 sum 3.193 -17.353 -7.892 19.329 Atomic orbital electron populations 1.20714 0.82892 0.96796 0.97641 1.43950 1.01740 1.00208 1.85830 1.19247 0.99018 0.85827 1.34210 0.91512 1.25048 0.97914 0.98578 0.98123 1.70067 1.19072 1.27328 1.38855 0.86258 0.78837 0.84219 0.77229 1.21560 1.21792 1.20512 1.20334 0.95917 0.86056 0.90789 1.22469 0.99955 0.94290 1.01608 1.21778 0.99931 0.93943 0.85347 1.47982 1.63740 1.10882 1.08944 1.16827 0.77668 0.81576 0.85727 1.90794 1.50691 1.69414 1.31791 1.21879 1.06982 0.95726 0.93713 1.25286 1.00563 0.97125 0.83272 1.84436 1.60567 1.43007 1.20556 1.28326 0.95255 0.80815 1.00804 1.70695 1.20745 1.27952 0.99548 1.22745 1.00120 0.94707 0.86338 1.22515 0.99963 0.95039 1.00944 0.96547 0.92752 0.98819 0.93799 0.92012 0.92242 0.90596 0.89614 0.91499 0.75388 0.72973 0.91967 0.85416 0.92341 0.90984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.14 8.09 59.85 0.48 4.62 16 2 N -0.60 -14.98 2.81 -173.44 -0.49 -15.47 16 3 C -0.25 -6.96 9.57 -15.06 -0.14 -7.11 16 4 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 5 C 0.00 0.04 5.08 -17.43 -0.09 -0.05 16 6 N -0.91 -26.70 10.73 55.49 0.60 -26.11 16 7 Si 0.90 21.91 29.57 -169.99 -5.03 16.89 16 8 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 9 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 11 C 0.18 3.64 2.55 -67.89 -0.17 3.47 16 12 C -0.14 -2.73 5.34 -26.61 -0.14 -2.87 16 13 C 0.11 1.83 6.44 -3.72 -0.02 1.80 16 14 N -0.58 -9.32 2.97 -173.78 -0.52 -9.84 16 15 C 0.60 9.43 7.67 -12.52 -0.10 9.34 16 16 O -0.55 -9.82 16.32 5.27 0.09 -9.74 16 17 C -0.06 -0.81 6.67 -83.02 -0.55 -1.37 16 18 C 0.01 0.11 11.95 29.96 0.36 0.47 16 19 O -0.20 -1.65 10.73 6.51 0.07 -1.58 16 20 C 0.18 1.30 13.19 51.96 0.69 1.98 16 21 N -0.46 -5.18 7.83 -11.48 -0.09 -5.27 16 22 C 0.08 1.25 6.13 -3.49 -0.02 1.23 16 23 C -0.14 -2.55 5.32 -26.39 -0.14 -2.69 16 24 H 0.02 0.44 7.79 -51.93 -0.40 0.04 16 25 H 0.05 1.48 6.80 -51.93 -0.35 1.13 16 26 H -0.01 -0.15 6.47 -51.93 -0.34 -0.48 16 27 H 0.25 7.19 8.31 -40.82 -0.34 6.86 16 28 H 0.06 1.28 7.87 -51.93 -0.41 0.87 16 29 H 0.06 1.21 7.72 -51.93 -0.40 0.81 16 30 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 31 H 0.09 1.41 7.00 -51.93 -0.36 1.05 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.23 1.60 8.06 -52.49 -0.42 1.18 16 34 H 0.25 0.54 8.06 -52.49 -0.42 0.12 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.13 1.80 4.11 -60.11 -0.25 1.55 16 37 H 0.06 1.09 6.74 -51.93 -0.35 0.74 16 38 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 309.61 15.07 4.67 4.67 Total: -1.00 -33.37 309.61 -5.50 -38.87 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -4.95 Total: -1.26 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: 0.14 Total: 8.84 kcal Atomic # 7 Polarization: -56.18 SS G_CDS: -0.50 Total: -56.68 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.16 Total: -11.32 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.89 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.37 -5.50 -38.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985325247.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.965 kcal (2) G-P(sol) polarization free energy of solvation -33.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds