Wall clock time and date at job start Tue Mar 31 2020 01:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36941 * 119.99545 * 2 1 4 4 H 1.08002 * 119.99469 * 204.29106 * 3 2 1 5 5 C 1.38810 * 120.00345 * 24.29012 * 3 2 1 6 6 N 1.31619 * 119.99879 * 10.98744 * 5 3 2 7 7 Si 1.86804 * 120.00001 * 190.98470 * 5 3 2 8 8 H 1.48502 * 109.47200 * 89.99911 * 7 5 3 9 9 H 1.48501 * 109.47036 * 210.00100 * 7 5 3 10 10 H 1.48503 * 109.46843 * 330.00114 * 7 5 3 11 11 C 1.46497 * 120.00095 * 179.97438 * 2 1 3 12 12 C 1.53038 * 109.46093 * 299.99657 * 11 2 1 13 13 C 1.53188 * 109.31381 * 181.37169 * 12 11 2 14 14 N 1.46920 * 108.77805 * 305.36834 * 13 12 11 15 15 C 1.34779 * 120.63310 * 233.58521 * 14 13 12 16 16 O 1.21612 * 120.00070 * 7.22374 * 15 14 13 17 17 C 1.47419 * 119.99879 * 187.22075 * 15 14 13 18 18 C 1.36092 * 126.44656 * 187.17714 * 17 15 14 19 19 O 1.34257 * 106.94761 * 180.02562 * 18 17 15 20 20 C 1.34051 * 108.23053 * 359.97438 * 19 18 17 21 21 N 1.29934 * 109.23814 * 0.02562 * 20 19 18 22 22 C 1.46930 * 118.73617 * 53.85613 * 14 13 12 23 23 C 1.53036 * 109.44966 * 60.06483 * 11 2 1 24 24 H 1.08997 * 109.46846 * 266.70555 * 1 2 3 25 25 H 1.08997 * 109.47238 * 26.70176 * 1 2 3 26 26 H 1.08995 * 109.46954 * 146.70432 * 1 2 3 27 27 H 0.96998 * 119.99793 * 179.97438 * 6 5 3 28 28 H 1.09005 * 109.45510 * 180.02562 * 11 2 1 29 29 H 1.09002 * 109.49656 * 61.42388 * 12 11 2 30 30 H 1.08998 * 109.50089 * 301.32893 * 12 11 2 31 31 H 1.08997 * 109.58835 * 185.58115 * 13 12 11 32 32 H 1.09004 * 109.70353 * 65.22754 * 13 12 11 33 33 H 1.08001 * 126.53053 * 359.97438 * 18 17 15 34 34 H 1.07996 * 125.37981 * 179.97438 * 20 19 18 35 35 H 1.09003 * 109.58471 * 65.93388 * 22 14 13 36 36 H 1.09002 * 109.58686 * 186.34822 * 22 14 13 37 37 H 1.09004 * 109.49582 * 298.56780 * 23 11 2 38 38 H 1.08995 * 109.49996 * 58.66946 * 23 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1579 1.2274 -0.3848 5 6 1.5477 2.3349 0.4945 6 7 0.4136 2.2506 1.1571 7 14 2.3474 4.0006 0.2196 8 1 1.8488 4.5854 -1.0512 9 1 2.0077 4.9049 1.3475 10 1 3.8212 3.8356 0.1439 11 6 2.1975 -1.2687 0.0006 12 6 1.8277 -2.0704 1.2506 13 6 2.6211 -3.3807 1.2652 14 7 2.3846 -4.0909 0.0010 15 6 1.9582 -5.3695 0.0009 16 8 1.6400 -5.9044 1.0457 17 6 1.8775 -6.1195 -1.2657 18 6 1.3421 -7.3587 -1.4388 19 8 1.4745 -7.6639 -2.7395 20 6 2.0772 -6.6353 -3.3524 21 7 2.3245 -5.7033 -2.4815 22 6 2.6274 -3.3827 -1.2633 23 6 1.8287 -2.0706 -1.2496 24 1 -0.3633 -0.0591 1.0260 25 1 -0.3633 0.9180 -0.4618 26 1 -0.3633 -0.8589 -0.5641 27 1 -0.0068 3.0535 1.5030 28 1 3.2692 -1.0692 0.0009 29 1 0.7604 -2.2915 1.2384 30 1 2.0691 -1.4890 2.1404 31 1 2.2897 -3.9993 2.0993 32 1 3.6845 -3.1654 1.3699 33 1 0.8964 -7.9789 -0.6752 34 1 2.3196 -6.5890 -4.4038 35 1 3.6910 -3.1653 -1.3618 36 1 2.3004 -4.0027 -2.0980 37 1 0.7614 -2.2917 -1.2382 38 1 2.0709 -1.4894 -2.1393 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985325247.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:44 Heat of formation + Delta-G solvation = 6.485815 kcal Electronic energy + Delta-G solvation = -22131.341148 eV Core-core repulsion = 18783.152231 eV Total energy + Delta-G solvation = -3348.188918 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.39271 -41.08726 -38.95496 -36.76900 -35.90285 -33.89402 -32.18549 -31.52785 -31.13872 -28.04404 -26.84176 -25.15123 -24.30454 -23.52417 -23.24849 -21.44680 -20.26700 -18.82339 -18.62750 -17.88488 -17.67467 -16.99975 -16.91551 -16.15811 -15.83052 -15.71162 -15.22598 -15.13095 -14.76401 -14.65376 -14.43501 -13.98108 -13.79585 -13.33385 -13.08734 -12.82359 -12.69077 -12.45483 -12.33378 -12.25689 -12.06051 -11.89413 -11.74964 -11.47910 -11.32918 -10.80728 -10.53884 -10.21561 -9.66377 -8.73956 -7.82837 -5.30766 0.13092 1.07605 1.47681 1.48509 1.57552 1.73613 1.99545 2.21381 2.51599 3.05915 3.32201 3.59541 3.67817 3.89927 3.94058 4.18063 4.20321 4.31814 4.37954 4.55256 4.57416 4.64319 4.74485 4.80338 4.90290 4.91938 5.00370 5.06124 5.22235 5.30510 5.44761 5.48167 5.62400 5.67921 5.71825 6.28291 6.36022 6.54039 7.00280 7.16273 7.88255 8.34740 9.22255 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.034790 B = 0.003961 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.639119 B = 7066.666113 C = 7392.549978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.183 3.817 2 N -0.611 5.611 3 C -0.262 4.262 4 H 0.073 0.927 5 C -0.054 4.054 6 N -0.942 5.942 7 Si 0.970 3.030 8 H -0.286 1.286 9 H -0.297 1.297 10 H -0.266 1.266 11 C 0.172 3.828 12 C -0.130 4.130 13 C 0.122 3.878 14 N -0.592 5.592 15 C 0.592 3.408 16 O -0.578 6.578 17 C -0.102 4.102 18 C 0.033 3.967 19 O -0.195 6.195 20 C 0.203 3.797 21 N -0.495 5.495 22 C 0.094 3.906 23 C -0.131 4.131 24 H -0.011 1.011 25 H 0.027 0.973 26 H 0.018 0.982 27 H 0.247 0.753 28 H 0.062 0.938 29 H 0.040 0.960 30 H 0.056 0.944 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.250 0.750 34 H 0.304 0.696 35 H 0.073 0.927 36 H 0.146 0.854 37 H 0.045 0.955 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.373 -20.040 -10.565 23.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.333 5.333 3 C -0.392 4.392 4 H 0.091 0.909 5 C -0.249 4.249 6 N -0.589 5.589 7 Si 0.799 3.201 8 H -0.213 1.213 9 H -0.224 1.224 10 H -0.191 1.191 11 C 0.066 3.934 12 C -0.171 4.171 13 C -0.001 4.001 14 N -0.322 5.322 15 C 0.381 3.619 16 O -0.459 6.459 17 C -0.219 4.219 18 C -0.042 4.042 19 O -0.080 6.080 20 C -0.024 4.024 21 N -0.224 5.224 22 C -0.028 4.028 23 C -0.171 4.171 24 H 0.007 0.993 25 H 0.046 0.954 26 H 0.036 0.964 27 H 0.056 0.944 28 H 0.080 0.920 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.266 0.734 34 H 0.319 0.681 35 H 0.091 0.909 36 H 0.163 0.837 37 H 0.064 0.936 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.425 -19.588 -10.098 22.477 hybrid contribution -0.345 0.953 0.611 1.183 sum 4.081 -18.635 -9.486 21.305 Atomic orbital electron populations 1.20385 0.83434 0.96343 0.96011 1.44185 1.01738 1.01392 1.85988 1.19619 0.99278 0.86890 1.33389 0.90907 1.25832 0.98629 1.02065 0.98328 1.70241 1.20610 1.27780 1.40251 0.85213 0.78546 0.79705 0.76656 1.21264 1.22411 1.19095 1.20548 0.95422 0.84800 0.92663 1.22253 0.99212 0.95499 1.00106 1.21601 1.00260 0.92226 0.86029 1.48043 1.64116 1.11314 1.08771 1.17253 0.76539 0.81389 0.86708 1.90764 1.51901 1.69953 1.33284 1.21539 1.10195 0.96941 0.93258 1.25634 0.98476 0.95976 0.84084 1.84500 1.60460 1.43169 1.19869 1.29385 0.92140 0.79099 1.01807 1.70483 1.22602 1.29826 0.99529 1.22755 1.00210 0.93213 0.86597 1.22335 0.99570 0.96046 0.99144 0.99282 0.95392 0.96390 0.94383 0.91977 0.94098 0.92523 0.89902 0.89766 0.73417 0.68119 0.90852 0.83739 0.93636 0.90841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.52 8.09 127.77 1.03 10.55 16 2 N -0.61 -31.16 2.81 -702.65 -1.97 -33.14 16 3 C -0.26 -14.46 9.57 84.03 0.80 -13.66 16 4 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16 5 C -0.05 -3.05 5.08 84.86 0.43 -2.62 16 6 N -0.94 -56.92 10.73 21.65 0.23 -56.69 16 7 Si 0.97 45.38 29.57 68.60 2.03 47.41 16 8 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 9 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 10 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 11 C 0.17 7.07 2.55 45.02 0.11 7.19 16 12 C -0.13 -5.08 5.34 30.67 0.16 -4.91 16 13 C 0.12 3.93 6.44 86.36 0.56 4.49 16 14 N -0.59 -18.35 2.97 -821.96 -2.44 -20.79 16 15 C 0.59 18.27 7.67 86.66 0.67 18.94 16 16 O -0.58 -20.58 16.32 -4.07 -0.07 -20.65 16 17 C -0.10 -2.40 6.67 40.41 0.27 -2.13 16 18 C 0.03 0.55 11.95 67.32 0.80 1.35 16 19 O -0.19 -2.47 10.73 0.38 0.00 -2.47 16 20 C 0.20 2.15 13.19 130.52 1.72 3.87 16 21 N -0.50 -9.69 7.83 -305.15 -2.39 -12.08 16 22 C 0.09 2.67 6.13 86.51 0.53 3.20 16 23 C -0.13 -4.50 5.32 30.81 0.16 -4.34 16 24 H -0.01 -0.63 7.79 -2.39 -0.02 -0.65 16 25 H 0.03 1.56 6.80 -2.39 -0.02 1.54 16 26 H 0.02 0.82 6.47 -2.39 -0.02 0.81 16 27 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 28 H 0.06 2.53 7.87 -2.38 -0.02 2.51 16 29 H 0.04 1.72 7.72 -2.39 -0.02 1.70 16 30 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.08 2.75 7.00 -2.39 -0.02 2.73 16 32 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.25 2.86 8.06 -2.91 -0.02 2.83 16 34 H 0.30 -0.44 8.06 -2.91 -0.02 -0.46 16 35 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.15 3.75 4.11 -18.54 -0.08 3.67 16 37 H 0.04 1.67 6.74 -2.39 -0.02 1.66 16 38 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -73.88 309.61 3.66 -70.22 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: 1.01 Total: 6.26 kcal Atomic # 6 Polarization: 14.67 SS G_CDS: 7.26 Total: 21.93 kcal Atomic # 7 Polarization: -116.13 SS G_CDS: -6.57 Total: -122.69 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -0.06 Total: -23.12 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -73.88 3.66 -70.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985325247.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.701 kcal (2) G-P(sol) polarization free energy of solvation -73.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds