Wall clock time and date at job start Tue Mar 31 2020 01:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34778 * 119.99738 * 2 1 4 4 O 1.21287 * 119.99474 * 179.97438 * 3 2 1 5 5 C 1.50692 * 120.00186 * 0.02562 * 3 2 1 6 6 C 1.50708 * 109.47181 * 179.97438 * 5 3 2 7 7 C 1.41374 * 128.00654 * 269.68042 * 6 5 3 8 8 N 1.30176 * 106.39753 * 179.89629 * 7 6 5 9 9 O 1.20922 * 111.60053 * 0.38445 * 8 7 6 10 10 C 1.34046 * 111.56900 * 359.75345 * 9 8 7 11 11 C 1.46494 * 119.99982 * 180.02562 * 2 1 3 12 12 C 1.53785 * 113.61502 * 243.22533 * 11 2 1 13 13 C 1.53774 * 87.07999 * 89.11506 * 12 11 2 14 14 N 1.46500 * 113.61587 * 270.79918 * 13 12 11 15 15 C 1.36941 * 120.00034 * 202.17268 * 14 13 12 16 16 H 1.07997 * 119.99683 * 359.97438 * 15 14 13 17 17 C 1.38805 * 119.99850 * 179.97438 * 15 14 13 18 18 N 1.31620 * 120.00395 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00050 * 179.97438 * 17 15 14 20 20 H 1.48511 * 109.46811 * 60.00566 * 19 17 15 21 21 H 1.48504 * 109.47296 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47572 * 300.00722 * 19 17 15 23 23 C 1.53786 * 87.17546 * 25.39361 * 13 12 11 24 24 H 1.08996 * 109.47475 * 268.85582 * 1 2 3 25 25 H 1.09008 * 109.47387 * 28.85905 * 1 2 3 26 26 H 1.09008 * 109.47126 * 148.85749 * 1 2 3 27 27 H 1.08999 * 109.47241 * 299.99616 * 5 3 2 28 28 H 1.09003 * 109.47496 * 60.00063 * 5 3 2 29 29 H 1.08005 * 126.80585 * 0.02753 * 7 6 5 30 30 H 1.07993 * 126.77877 * 179.97438 * 10 9 8 31 31 H 1.08998 * 112.90683 * 111.97397 * 11 2 1 32 32 H 1.08998 * 113.61231 * 334.56510 * 12 11 2 33 33 H 1.09002 * 113.61188 * 203.66446 * 12 11 2 34 34 H 1.09006 * 113.61414 * 139.98324 * 13 12 11 35 35 H 0.96996 * 120.00100 * 22.17552 * 14 13 12 36 36 H 0.96995 * 120.00344 * 179.97438 * 18 17 15 37 37 H 1.08993 * 113.61542 * 89.15581 * 23 13 12 38 38 H 1.08998 * 113.61135 * 220.06252 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 0.0006 6 6 2.3647 3.6178 0.0011 7 6 2.9256 4.2830 1.1153 8 7 3.7158 5.1999 0.6363 9 8 3.7161 5.2000 -0.5729 10 6 2.9066 4.2521 -1.0659 11 6 2.1975 -1.2687 -0.0006 12 6 3.0552 -1.4854 1.2573 13 6 1.8171 -2.1391 1.8932 14 7 0.9458 -1.1906 2.5913 15 6 0.0889 -1.6350 3.5626 16 1 0.0550 -2.6849 3.8136 17 6 -0.7363 -0.7362 4.2243 18 7 -0.6954 0.5432 3.9180 19 14 -1.9058 -1.3425 5.5487 20 1 -1.1286 -1.9856 6.6387 21 1 -2.6702 -0.1938 6.0978 22 1 -2.8476 -2.3301 4.9633 23 6 1.3511 -2.4675 0.4649 24 1 -0.3634 -0.0205 1.0274 25 1 -0.3634 0.9001 -0.4960 26 1 -0.3634 -0.8796 -0.5315 27 1 0.7584 2.5302 -0.8892 28 1 0.7590 2.5299 0.8908 29 1 2.7376 4.0710 2.1575 30 1 2.7225 4.0370 -2.1081 31 1 2.7350 -1.4478 -0.9317 32 1 3.3581 -0.5584 1.7442 33 1 3.8848 -2.1761 1.1064 34 1 2.0475 -3.0211 2.4909 35 1 0.9759 -0.2477 2.3655 36 1 -1.2722 1.1713 4.3802 37 1 1.7139 -3.4272 0.0970 38 1 0.2802 -2.3323 0.3131 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999283037.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:05 Heat of formation + Delta-G solvation = 77.618232 kcal Electronic energy + Delta-G solvation = -22422.939915 eV Core-core repulsion = 19077.835530 eV Total energy + Delta-G solvation = -3345.104384 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.77341 -40.13893 -37.81447 -34.40849 -34.19277 -33.20856 -31.93766 -30.03712 -28.64526 -26.78498 -24.99056 -24.14775 -23.16185 -22.65612 -21.46359 -19.53153 -17.93850 -17.70061 -17.55200 -17.31748 -16.36771 -15.86832 -15.50114 -14.86586 -14.61113 -14.43854 -13.76403 -13.24494 -13.04250 -13.02632 -12.82635 -12.49373 -12.27089 -11.86529 -11.75075 -11.41287 -11.24487 -11.06996 -10.90418 -10.80422 -10.31222 -10.19368 -10.13614 -9.83443 -9.67024 -9.48766 -9.09760 -8.94145 -8.09727 -7.05733 -5.88596 -3.16262 1.62952 2.39375 2.99827 3.31665 3.37385 3.43021 3.43309 3.48574 4.45141 4.50497 4.79789 4.87040 4.94789 5.17674 5.22715 5.31873 5.42904 5.44825 5.50556 5.58896 5.77134 5.82397 5.85567 5.86465 5.98567 6.15966 6.20023 6.30536 6.44439 6.62813 6.67611 6.72808 6.87605 7.12478 7.63153 7.79074 8.31989 8.38582 8.56376 9.43197 10.00142 10.36949 11.33746 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.017441 B = 0.005526 C = 0.004603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.998090 B = 5066.038419 C = 6081.544173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.586 5.586 3 C 0.518 3.482 4 O -0.542 6.542 5 C -0.067 4.067 6 C -0.172 4.172 7 C 0.009 3.991 8 N -0.371 5.371 9 O 0.092 5.908 10 C -0.056 4.056 11 C 0.130 3.870 12 C -0.161 4.161 13 C 0.165 3.835 14 N -0.703 5.703 15 C -0.242 4.242 16 H 0.071 0.929 17 C -0.010 4.010 18 N -0.933 5.933 19 Si 0.908 3.092 20 H -0.287 1.287 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.183 4.183 24 H 0.099 0.901 25 H 0.060 0.940 26 H 0.066 0.934 27 H 0.103 0.897 28 H 0.118 0.882 29 H 0.190 0.810 30 H 0.212 0.788 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.061 0.939 35 H 0.387 0.613 36 H 0.256 0.744 37 H 0.079 0.921 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.934 2.173 -11.933 12.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.319 5.319 3 C 0.306 3.694 4 O -0.420 6.420 5 C -0.107 4.107 6 C -0.176 4.176 7 C -0.170 4.170 8 N -0.076 5.076 9 O 0.028 5.972 10 C -0.138 4.138 11 C 0.027 3.973 12 C -0.201 4.201 13 C 0.053 3.947 14 N -0.344 5.344 15 C -0.373 4.373 16 H 0.089 0.911 17 C -0.206 4.206 18 N -0.581 5.581 19 Si 0.739 3.261 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.224 4.224 24 H 0.117 0.883 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.121 0.879 28 H 0.136 0.864 29 H 0.208 0.792 30 H 0.229 0.771 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.079 0.921 35 H 0.223 0.777 36 H 0.066 0.934 37 H 0.098 0.902 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.245 3.036 -11.218 12.066 hybrid contribution -1.375 -0.819 0.527 1.685 sum 1.870 2.217 -10.691 11.077 Atomic orbital electron populations 1.22144 0.78811 1.01373 1.05409 1.47448 1.07181 1.04808 1.72453 1.20296 0.87858 0.84817 0.76474 1.90678 1.13860 1.87398 1.50016 1.19995 0.96190 0.88521 1.06011 1.20809 1.03709 1.00759 0.92344 1.25009 0.95861 0.93842 1.02283 1.73830 1.20360 1.22044 0.91328 1.84771 1.51136 1.45415 1.15887 1.25665 0.94980 0.92184 1.00975 1.21775 0.94434 0.83666 0.97474 1.23704 0.97720 1.01809 0.96876 1.21153 0.89781 0.93313 0.90494 1.42312 1.43668 1.06255 1.42126 1.19262 1.13240 0.93301 1.11455 0.91125 1.24698 1.00353 0.95398 1.00191 1.69612 1.42477 1.01072 1.44978 0.86260 0.80728 0.77299 0.81820 1.21332 1.21711 1.21280 1.24234 1.00590 0.95659 1.01896 0.88265 0.92156 0.91500 0.87928 0.86358 0.79249 0.77121 0.91368 0.90813 0.90013 0.92101 0.77683 0.93391 0.90242 0.90347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.98 8.65 59.85 0.52 1.50 16 2 N -0.59 -9.54 2.08 -172.90 -0.36 -9.90 16 3 C 0.52 8.73 7.36 -10.99 -0.08 8.65 16 4 O -0.54 -10.85 14.99 5.55 0.08 -10.77 16 5 C -0.07 -0.90 4.82 -29.04 -0.14 -1.04 16 6 C -0.17 -2.42 4.82 -104.42 -0.50 -2.92 16 7 C 0.01 0.14 12.16 -17.06 -0.21 -0.07 16 8 N -0.37 -5.91 12.07 30.35 0.37 -5.55 16 9 O 0.09 1.29 11.20 17.16 0.19 1.48 16 10 C -0.06 -0.67 12.26 29.74 0.36 -0.31 16 11 C 0.13 2.13 4.13 -67.03 -0.28 1.85 16 12 C -0.16 -2.90 7.13 -25.92 -0.18 -3.08 16 13 C 0.16 3.20 4.55 -67.12 -0.31 2.89 16 14 N -0.70 -16.44 4.06 -52.64 -0.21 -16.65 16 15 C -0.24 -6.27 9.97 -15.06 -0.15 -6.42 16 16 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 17 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 18 N -0.93 -25.64 13.06 55.49 0.72 -24.91 16 19 Si 0.91 21.24 29.55 -169.99 -5.02 16.22 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 23 C -0.18 -2.93 7.17 -25.82 -0.19 -3.11 16 24 H 0.10 1.91 6.15 -51.93 -0.32 1.59 16 25 H 0.06 0.72 6.40 -51.92 -0.33 0.39 16 26 H 0.07 0.92 6.55 -51.92 -0.34 0.58 16 27 H 0.10 1.04 7.40 -51.93 -0.38 0.65 16 28 H 0.12 1.69 8.11 -51.93 -0.42 1.27 16 29 H 0.19 2.75 8.06 -52.48 -0.42 2.33 16 30 H 0.21 1.60 8.06 -52.49 -0.42 1.18 16 31 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.07 1.55 7.18 -51.93 -0.37 1.18 16 33 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.06 1.18 8.12 -51.93 -0.42 0.76 16 35 H 0.39 9.45 5.53 -40.82 -0.23 9.22 16 36 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 37 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.08 1.31 5.90 -51.93 -0.31 1.01 16 LS Contribution 314.87 15.07 4.75 4.75 Total: -1.00 -31.02 314.87 -5.52 -36.53 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -4.78 Total: 11.23 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: -1.25 Total: -2.43 kcal Atomic # 7 Polarization: -57.54 SS G_CDS: 0.52 Total: -57.02 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.28 Total: -9.29 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.02 -5.52 -36.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999283037.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.153 kcal (2) G-P(sol) polarization free energy of solvation -31.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds