Wall clock time and date at job start Tue Mar 31 2020 01:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34778 * 119.99738 * 2 1 4 4 O 1.21287 * 119.99474 * 179.97438 * 3 2 1 5 5 C 1.50692 * 120.00186 * 0.02562 * 3 2 1 6 6 C 1.50708 * 109.47181 * 179.97438 * 5 3 2 7 7 C 1.41374 * 128.00654 * 269.68042 * 6 5 3 8 8 N 1.30176 * 106.39753 * 179.89629 * 7 6 5 9 9 O 1.20922 * 111.60053 * 0.38445 * 8 7 6 10 10 C 1.34046 * 111.56900 * 359.75345 * 9 8 7 11 11 C 1.46494 * 119.99982 * 180.02562 * 2 1 3 12 12 C 1.53785 * 113.61502 * 243.22533 * 11 2 1 13 13 C 1.53774 * 87.07999 * 89.11506 * 12 11 2 14 14 N 1.46500 * 113.61587 * 270.79918 * 13 12 11 15 15 C 1.36941 * 120.00034 * 202.17268 * 14 13 12 16 16 H 1.07997 * 119.99683 * 359.97438 * 15 14 13 17 17 C 1.38805 * 119.99850 * 179.97438 * 15 14 13 18 18 N 1.31620 * 120.00395 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00050 * 179.97438 * 17 15 14 20 20 H 1.48511 * 109.46811 * 60.00566 * 19 17 15 21 21 H 1.48504 * 109.47296 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47572 * 300.00722 * 19 17 15 23 23 C 1.53786 * 87.17546 * 25.39361 * 13 12 11 24 24 H 1.08996 * 109.47475 * 268.85582 * 1 2 3 25 25 H 1.09008 * 109.47387 * 28.85905 * 1 2 3 26 26 H 1.09008 * 109.47126 * 148.85749 * 1 2 3 27 27 H 1.08999 * 109.47241 * 299.99616 * 5 3 2 28 28 H 1.09003 * 109.47496 * 60.00063 * 5 3 2 29 29 H 1.08005 * 126.80585 * 0.02753 * 7 6 5 30 30 H 1.07993 * 126.77877 * 179.97438 * 10 9 8 31 31 H 1.08998 * 112.90683 * 111.97397 * 11 2 1 32 32 H 1.08998 * 113.61231 * 334.56510 * 12 11 2 33 33 H 1.09002 * 113.61188 * 203.66446 * 12 11 2 34 34 H 1.09006 * 113.61414 * 139.98324 * 13 12 11 35 35 H 0.96996 * 120.00100 * 22.17552 * 14 13 12 36 36 H 0.96995 * 120.00344 * 179.97438 * 18 17 15 37 37 H 1.08993 * 113.61542 * 89.15581 * 23 13 12 38 38 H 1.08998 * 113.61135 * 220.06252 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 0.0006 6 6 2.3647 3.6178 0.0011 7 6 2.9256 4.2830 1.1153 8 7 3.7158 5.1999 0.6363 9 8 3.7161 5.2000 -0.5729 10 6 2.9066 4.2521 -1.0659 11 6 2.1975 -1.2687 -0.0006 12 6 3.0552 -1.4854 1.2573 13 6 1.8171 -2.1391 1.8932 14 7 0.9458 -1.1906 2.5913 15 6 0.0889 -1.6350 3.5626 16 1 0.0550 -2.6849 3.8136 17 6 -0.7363 -0.7362 4.2243 18 7 -0.6954 0.5432 3.9180 19 14 -1.9058 -1.3425 5.5487 20 1 -1.1286 -1.9856 6.6387 21 1 -2.6702 -0.1938 6.0978 22 1 -2.8476 -2.3301 4.9633 23 6 1.3511 -2.4675 0.4649 24 1 -0.3634 -0.0205 1.0274 25 1 -0.3634 0.9001 -0.4960 26 1 -0.3634 -0.8796 -0.5315 27 1 0.7584 2.5302 -0.8892 28 1 0.7590 2.5299 0.8908 29 1 2.7376 4.0710 2.1575 30 1 2.7225 4.0370 -2.1081 31 1 2.7350 -1.4478 -0.9317 32 1 3.3581 -0.5584 1.7442 33 1 3.8848 -2.1761 1.1064 34 1 2.0475 -3.0211 2.4909 35 1 0.9759 -0.2477 2.3655 36 1 -1.2722 1.1713 4.3802 37 1 1.7139 -3.4272 0.0970 38 1 0.2802 -2.3323 0.3131 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999283037.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:05 Heat of formation + Delta-G solvation = 58.386872 kcal Electronic energy + Delta-G solvation = -22423.773849 eV Core-core repulsion = 19077.835530 eV Total energy + Delta-G solvation = -3345.938319 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.89534 -41.48183 -39.21369 -35.70958 -35.55562 -34.87787 -33.07300 -31.86648 -29.79645 -28.06435 -26.55727 -25.69338 -24.64312 -23.85180 -22.65791 -20.86099 -19.46379 -19.15663 -18.77983 -18.51934 -17.69687 -17.19528 -16.84635 -16.57423 -15.92014 -15.76409 -15.35555 -14.85596 -14.47574 -14.29982 -13.97047 -13.80739 -13.49987 -13.27592 -13.07828 -12.99273 -12.73249 -12.51544 -12.47092 -12.19044 -12.14928 -11.69036 -11.65862 -11.33708 -11.12220 -10.83547 -10.74140 -10.25322 -9.42298 -8.93445 -7.89766 -5.16497 0.61819 1.23891 1.50974 1.52462 1.57875 1.71233 2.19293 2.45468 2.59085 3.35240 3.41634 3.55597 3.79286 3.80112 3.92635 3.96061 4.04154 4.24397 4.31037 4.39015 4.40333 4.58946 4.72250 4.78932 4.85696 4.87016 4.93729 5.04621 5.11892 5.13128 5.31047 5.34617 5.46008 5.56730 5.81204 6.33130 6.52949 7.28001 7.32009 7.40205 8.15178 8.42228 9.32130 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.017441 B = 0.005526 C = 0.004603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.998090 B = 5066.038419 C = 6081.544173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.587 5.587 3 C 0.512 3.488 4 O -0.579 6.579 5 C -0.056 4.056 6 C -0.194 4.194 7 C -0.014 4.014 8 N -0.397 5.397 9 O 0.092 5.908 10 C -0.031 4.031 11 C 0.130 3.870 12 C -0.157 4.157 13 C 0.144 3.856 14 N -0.714 5.714 15 C -0.243 4.243 16 H 0.072 0.928 17 C -0.063 4.063 18 N -0.957 5.957 19 Si 0.965 3.035 20 H -0.288 1.288 21 H -0.298 1.298 22 H -0.277 1.277 23 C -0.158 4.158 24 H 0.056 0.944 25 H 0.093 0.907 26 H 0.081 0.919 27 H 0.145 0.855 28 H 0.106 0.894 29 H 0.184 0.816 30 H 0.261 0.739 31 H 0.087 0.913 32 H 0.035 0.965 33 H 0.106 0.894 34 H 0.058 0.942 35 H 0.380 0.620 36 H 0.250 0.750 37 H 0.113 0.887 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.365 1.197 -14.162 14.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.319 5.319 3 C 0.301 3.699 4 O -0.459 6.459 5 C -0.096 4.096 6 C -0.199 4.199 7 C -0.192 4.192 8 N -0.102 5.102 9 O 0.028 5.972 10 C -0.113 4.113 11 C 0.027 3.973 12 C -0.196 4.196 13 C 0.033 3.967 14 N -0.354 5.354 15 C -0.375 4.375 16 H 0.090 0.910 17 C -0.256 4.256 18 N -0.607 5.607 19 Si 0.795 3.205 20 H -0.215 1.215 21 H -0.224 1.224 22 H -0.203 1.203 23 C -0.199 4.199 24 H 0.075 0.925 25 H 0.112 0.888 26 H 0.100 0.900 27 H 0.162 0.838 28 H 0.124 0.876 29 H 0.202 0.798 30 H 0.276 0.724 31 H 0.105 0.895 32 H 0.054 0.946 33 H 0.124 0.876 34 H 0.076 0.924 35 H 0.214 0.786 36 H 0.059 0.941 37 H 0.131 0.869 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.678 2.017 -13.459 13.870 hybrid contribution -1.118 -0.573 1.199 1.737 sum 1.560 1.444 -12.260 12.442 Atomic orbital electron populations 1.22089 0.77948 1.03835 1.03301 1.47565 1.07710 1.04801 1.71809 1.20875 0.87625 0.85883 0.75511 1.90654 1.15515 1.88001 1.51768 1.19960 0.95856 0.86469 1.07335 1.20947 1.04876 1.01565 0.92474 1.25183 0.96541 0.94577 1.02903 1.73819 1.21199 1.22838 0.92304 1.84733 1.51343 1.45893 1.15187 1.26487 0.92428 0.89928 1.02429 1.21853 0.94151 0.84006 0.97328 1.23680 0.98056 1.00433 0.97447 1.21453 0.90380 0.92733 0.92110 1.42389 1.44047 1.06569 1.42382 1.19550 1.13072 0.93316 1.11513 0.91012 1.25342 1.02218 0.95685 1.02348 1.69750 1.43270 1.01784 1.45945 0.85348 0.79022 0.76568 0.79532 1.21515 1.22427 1.20336 1.24040 1.00357 0.97108 0.98368 0.92534 0.88847 0.89996 0.83759 0.87627 0.79845 0.72375 0.89517 0.94572 0.87556 0.92419 0.78555 0.94093 0.86907 0.90799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.99 8.65 127.77 1.11 3.10 16 2 N -0.59 -18.24 2.08 -819.31 -1.70 -19.94 16 3 C 0.51 16.74 7.36 87.65 0.65 17.38 16 4 O -0.58 -22.97 14.99 -3.05 -0.05 -23.02 16 5 C -0.06 -1.44 4.82 29.10 0.14 -1.30 16 6 C -0.19 -5.25 4.82 -19.74 -0.10 -5.35 16 7 C -0.01 -0.44 12.16 85.71 1.04 0.60 16 8 N -0.40 -12.73 12.07 -59.27 -0.72 -13.44 16 9 O 0.09 2.48 11.20 71.57 0.80 3.28 16 10 C -0.03 -0.67 12.26 67.17 0.82 0.15 16 11 C 0.13 3.99 4.13 45.58 0.19 4.18 16 12 C -0.16 -5.50 7.13 31.12 0.22 -5.28 16 13 C 0.14 5.46 4.55 45.52 0.21 5.67 16 14 N -0.71 -33.66 4.06 -320.45 -1.30 -34.96 16 15 C -0.24 -12.66 9.97 84.03 0.84 -11.83 16 16 H 0.07 3.64 7.83 -2.91 -0.02 3.62 16 17 C -0.06 -3.36 5.50 84.86 0.47 -2.90 16 18 N -0.96 -53.70 13.06 21.65 0.28 -53.42 16 19 Si 0.97 43.98 29.55 68.60 2.03 46.01 16 20 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 21 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 22 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 23 C -0.16 -4.66 7.17 31.18 0.22 -4.44 16 24 H 0.06 2.16 6.15 -2.39 -0.01 2.15 16 25 H 0.09 1.97 6.40 -2.38 -0.02 1.95 16 26 H 0.08 2.04 6.55 -2.38 -0.02 2.03 16 27 H 0.14 2.38 7.40 -2.39 -0.02 2.36 16 28 H 0.11 3.01 8.11 -2.39 -0.02 2.99 16 29 H 0.18 5.76 8.06 -2.91 -0.02 5.74 16 30 H 0.26 2.68 8.06 -2.91 -0.02 2.66 16 31 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.04 1.54 7.18 -2.39 -0.02 1.52 16 33 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 34 H 0.06 2.20 8.12 -2.38 -0.02 2.18 16 35 H 0.38 18.96 5.53 -92.71 -0.51 18.44 16 36 H 0.25 13.82 8.31 -92.71 -0.77 13.05 16 37 H 0.11 2.60 8.14 -2.39 -0.02 2.59 16 38 H 0.07 2.29 5.90 -2.39 -0.01 2.28 16 Total: -1.00 -69.03 314.87 5.73 -63.30 By element: Atomic # 1 Polarization: 31.62 SS G_CDS: 0.58 Total: 32.19 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: 5.81 Total: 0.01 kcal Atomic # 7 Polarization: -118.33 SS G_CDS: -3.44 Total: -121.77 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: 0.76 Total: -19.74 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -69.03 5.73 -63.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999283037.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.690 kcal (2) G-P(sol) polarization free energy of solvation -69.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds