Wall clock time and date at job start Tue Mar 31 2020 01:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34780 * 120.00140 * 2 1 4 4 O 1.21689 * 119.99892 * 185.27398 * 3 2 1 5 5 C 1.46715 * 119.99793 * 5.28045 * 3 2 1 6 6 C 1.36345 * 126.64332 * 173.77639 * 5 3 2 7 7 N 1.33698 * 107.45268 * 179.73699 * 6 5 3 8 8 C 1.30619 * 108.99504 * 0.24435 * 7 6 5 9 9 O 1.33668 * 109.15418 * 359.97438 * 8 7 6 10 10 C 1.46503 * 120.00020 * 180.02562 * 2 1 3 11 11 C 1.53048 * 109.45996 * 60.02397 * 10 2 1 12 12 C 1.53190 * 109.30854 * 178.60015 * 11 10 2 13 13 N 1.46921 * 108.76892 * 54.65846 * 12 11 10 14 14 C 1.36937 * 120.63720 * 126.39994 * 13 12 11 15 15 H 1.08003 * 119.99343 * 327.84188 * 14 13 12 16 16 C 1.38806 * 120.00452 * 147.83638 * 14 13 12 17 17 N 1.31612 * 120.00323 * 166.65908 * 16 14 13 18 18 Si 1.86804 * 119.99857 * 346.65885 * 16 14 13 19 19 H 1.48500 * 109.47029 * 86.62032 * 18 16 14 20 20 H 1.48498 * 109.47325 * 206.62240 * 18 16 14 21 21 H 1.48500 * 109.46986 * 326.62379 * 18 16 14 22 22 C 1.46927 * 118.73661 * 306.38053 * 13 12 11 23 23 C 1.53041 * 109.46040 * 299.96824 * 10 2 1 24 24 H 1.08997 * 109.47394 * 84.66562 * 1 2 3 25 25 H 1.09005 * 109.46639 * 204.66688 * 1 2 3 26 26 H 1.09004 * 109.46950 * 324.66407 * 1 2 3 27 27 H 1.07996 * 126.27351 * 359.97438 * 6 5 3 28 28 H 1.07995 * 125.42100 * 180.02562 * 8 7 6 29 29 H 1.09003 * 109.46165 * 179.97438 * 10 2 1 30 30 H 1.08991 * 109.49493 * 298.56743 * 11 10 2 31 31 H 1.09001 * 109.49589 * 58.66494 * 11 10 2 32 32 H 1.09002 * 109.60052 * 294.86161 * 12 11 10 33 33 H 1.09005 * 109.70159 * 174.50506 * 12 11 10 34 34 H 0.97001 * 120.00309 * 180.02562 * 17 16 14 35 35 H 1.09005 * 109.58532 * 293.82137 * 22 13 12 36 36 H 1.09000 * 109.70822 * 173.46294 * 22 13 12 37 37 H 1.09000 * 109.49851 * 301.33490 * 23 10 2 38 38 H 1.08999 * 109.49365 * 61.39998 * 23 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3519 1.1694 -0.0969 5 6 1.4100 2.4351 0.1169 6 6 1.9550 3.6778 0.2498 7 7 0.9464 4.5528 0.3173 8 6 -0.1848 3.9047 0.2374 9 8 0.0663 2.5975 0.1160 10 6 2.1975 -1.2688 -0.0006 11 6 1.8280 -2.0703 -1.2509 12 6 2.6220 -3.3803 -1.2658 13 7 2.3850 -4.0910 -0.0020 14 6 1.9519 -5.3901 -0.0025 15 1 1.3090 -5.7446 -0.7947 16 6 2.3393 -6.2514 1.0148 17 7 1.7281 -7.4069 1.1673 18 14 3.7283 -5.7702 2.1676 19 1 3.1826 -4.9698 3.2931 20 1 4.3765 -6.9955 2.7001 21 1 4.7298 -4.9628 1.4259 22 6 2.6218 -3.3815 1.2626 23 6 1.8282 -2.0713 1.2491 24 1 -0.3634 0.0955 -1.0232 25 1 -0.3633 -0.9340 0.4289 26 1 -0.3633 0.8384 0.5944 27 1 3.0084 3.9127 0.2892 28 1 -1.1667 4.3537 0.2642 29 1 3.2691 -1.0694 -0.0009 30 1 0.7609 -2.2914 -1.2391 31 1 2.0697 -1.4885 -2.1405 32 1 3.6850 -3.1625 -1.3688 33 1 2.2934 -3.9997 -2.1004 34 1 1.9985 -8.0086 1.8785 35 1 3.6849 -3.1638 1.3659 36 1 2.2926 -3.9994 2.0981 37 1 2.0699 -1.4903 2.1392 38 1 0.7608 -2.2919 1.2375 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001005791212.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:25 Heat of formation + Delta-G solvation = 29.573558 kcal Electronic energy + Delta-G solvation = -22225.911078 eV Core-core repulsion = 18878.723320 eV Total energy + Delta-G solvation = -3347.187758 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.73762 -40.05297 -37.79330 -35.75101 -34.94610 -32.60407 -31.07501 -30.49712 -30.03618 -27.14609 -25.58903 -23.88420 -23.05740 -22.87774 -21.85813 -20.37148 -19.28418 -17.97525 -17.26320 -17.10316 -16.87184 -16.31381 -15.31081 -15.05856 -14.64854 -14.24179 -14.12482 -13.86319 -13.81274 -13.27581 -13.10007 -13.01419 -12.43812 -12.26104 -12.00806 -11.85177 -11.78471 -11.08409 -10.97959 -10.91971 -10.61359 -10.37976 -10.21136 -10.10025 -9.77354 -9.54963 -9.43459 -8.71793 -8.59904 -6.97435 -5.97639 -3.41747 0.56952 2.14968 2.15373 2.88158 2.94451 3.27948 3.45959 3.48483 3.80985 4.36754 4.48687 4.64988 4.90655 4.99786 5.09686 5.17009 5.20352 5.22012 5.34653 5.45571 5.57412 5.70611 5.74826 5.90965 5.93790 5.98214 6.12402 6.21167 6.31628 6.52885 6.56145 6.58035 6.60460 6.81392 7.12270 7.28221 7.85760 7.96398 8.30677 8.89445 9.67047 10.05657 11.18342 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.037661 B = 0.004114 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.294178 B = 6804.018617 C = 6934.778086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.595 5.595 3 C 0.600 3.400 4 O -0.519 6.519 5 C -0.098 4.098 6 C 0.046 3.954 7 N -0.495 5.495 8 C 0.188 3.812 9 O -0.185 6.185 10 C 0.144 3.856 11 C -0.140 4.140 12 C 0.151 3.849 13 N -0.607 5.607 14 C -0.262 4.262 15 H 0.085 0.915 16 C 0.025 3.975 17 N -0.913 5.913 18 Si 0.891 3.109 19 H -0.287 1.287 20 H -0.303 1.303 21 H -0.270 1.270 22 C 0.124 3.876 23 C -0.140 4.140 24 H 0.059 0.941 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.196 0.804 28 H 0.254 0.746 29 H 0.100 0.900 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.026 0.974 33 H 0.068 0.932 34 H 0.263 0.737 35 H 0.029 0.971 36 H 0.078 0.922 37 H 0.057 0.943 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.071 20.352 -1.830 21.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.325 5.325 3 C 0.386 3.614 4 O -0.397 6.397 5 C -0.153 4.153 6 C -0.097 4.097 7 N -0.223 5.223 8 C -0.037 4.037 9 O -0.071 6.071 10 C 0.043 3.957 11 C -0.180 4.180 12 C 0.025 3.975 13 N -0.331 5.331 14 C -0.391 4.391 15 H 0.103 0.897 16 C -0.174 4.174 17 N -0.556 5.556 18 Si 0.722 3.278 19 H -0.214 1.214 20 H -0.232 1.232 21 H -0.195 1.195 22 C -0.002 4.002 23 C -0.180 4.180 24 H 0.078 0.922 25 H 0.103 0.897 26 H 0.097 0.903 27 H 0.213 0.787 28 H 0.270 0.730 29 H 0.118 0.882 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.044 0.956 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.047 0.953 36 H 0.096 0.904 37 H 0.075 0.925 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.458 20.732 -1.752 21.278 hybrid contribution 0.376 -0.359 0.709 0.879 sum -4.082 20.373 -1.043 20.804 Atomic orbital electron populations 1.22038 0.79053 1.03849 1.02326 1.48048 1.07622 1.05886 1.70965 1.16548 0.86097 0.81027 0.77684 1.90892 1.12036 1.85702 1.51037 1.23358 0.80217 0.98121 1.13633 1.23599 1.00581 0.86806 0.98683 1.70454 0.98369 1.34731 1.18731 1.28466 1.00648 0.77358 0.97235 1.84754 1.24448 1.29385 1.68472 1.21289 0.97366 0.80536 0.96512 1.22379 1.01891 0.97800 0.95884 1.20905 0.96065 0.90865 0.89709 1.44369 1.78493 1.10989 0.99252 1.18911 1.24374 0.84072 1.11702 0.89722 1.25392 0.98096 0.95054 0.98857 1.69761 1.41881 1.10478 1.33463 0.86892 0.83949 0.76266 0.80666 1.21442 1.23170 1.19496 1.21424 0.96463 0.91573 0.90734 1.22412 1.02069 0.97628 0.95926 0.92240 0.89701 0.90321 0.78699 0.73027 0.88228 0.91503 0.92310 0.95583 0.91305 0.92668 0.95328 0.90374 0.92453 0.91222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.75 8.82 59.85 0.53 1.28 16 2 N -0.59 -8.21 2.76 -175.41 -0.48 -8.69 16 3 C 0.60 8.68 7.64 -12.84 -0.10 8.58 16 4 O -0.52 -8.98 16.24 5.20 0.08 -8.90 16 5 C -0.10 -1.17 6.81 -36.84 -0.25 -1.42 16 6 C 0.05 0.51 11.67 -17.42 -0.20 0.31 16 7 N -0.49 -5.11 11.26 -14.67 -0.17 -5.27 16 8 C 0.19 1.37 13.21 52.25 0.69 2.06 16 9 O -0.18 -1.73 7.44 4.40 0.03 -1.70 16 10 C 0.14 2.31 2.47 -67.88 -0.17 2.15 16 11 C -0.14 -2.23 5.34 -26.61 -0.14 -2.37 16 12 C 0.15 2.90 6.52 -3.71 -0.02 2.88 16 13 N -0.61 -14.03 2.73 -172.32 -0.47 -14.50 16 14 C -0.26 -7.17 10.05 -15.06 -0.15 -7.32 16 15 H 0.09 2.47 8.06 -52.48 -0.42 2.05 16 16 C 0.03 0.72 5.33 -17.44 -0.09 0.62 16 17 N -0.91 -27.66 13.97 55.49 0.78 -26.89 16 18 Si 0.89 22.30 24.26 -169.99 -4.12 18.18 16 19 H -0.29 -6.85 6.44 56.52 0.36 -6.49 16 20 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 21 H -0.27 -6.68 6.62 56.52 0.37 -6.30 16 22 C 0.12 2.64 4.16 -3.71 -0.02 2.63 16 23 C -0.14 -2.41 5.32 -26.61 -0.14 -2.55 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.08 0.94 6.47 -51.93 -0.34 0.60 16 26 H 0.08 0.75 5.22 -51.93 -0.27 0.48 16 27 H 0.20 1.93 8.06 -52.49 -0.42 1.51 16 28 H 0.25 0.46 8.06 -52.49 -0.42 0.04 16 29 H 0.10 1.76 6.91 -51.93 -0.36 1.40 16 30 H 0.07 1.06 7.72 -51.93 -0.40 0.66 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.07 1.31 7.93 -51.93 -0.41 0.90 16 34 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 35 H 0.03 0.62 6.94 -51.93 -0.36 0.26 16 36 H 0.08 1.81 4.48 -51.93 -0.23 1.58 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.07 1.18 6.72 -51.93 -0.35 0.83 16 LS Contribution 303.60 15.07 4.58 4.58 Total: -1.00 -33.03 303.60 -4.73 -37.75 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -4.88 Total: -1.42 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: -0.07 Total: 6.85 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: -0.35 Total: -55.35 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.12 Total: -10.59 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.12 Total: 18.18 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -33.03 -4.73 -37.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005791212.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.327 kcal (2) G-P(sol) polarization free energy of solvation -33.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds