Wall clock time and date at job start Tue Mar 31 2020 01:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34780 * 120.00140 * 2 1 4 4 O 1.21689 * 119.99892 * 185.27398 * 3 2 1 5 5 C 1.46715 * 119.99793 * 5.28045 * 3 2 1 6 6 C 1.36345 * 126.64332 * 173.77639 * 5 3 2 7 7 N 1.33698 * 107.45268 * 179.73699 * 6 5 3 8 8 C 1.30619 * 108.99504 * 0.24435 * 7 6 5 9 9 O 1.33668 * 109.15418 * 359.97438 * 8 7 6 10 10 C 1.46503 * 120.00020 * 180.02562 * 2 1 3 11 11 C 1.53048 * 109.45996 * 60.02397 * 10 2 1 12 12 C 1.53190 * 109.30854 * 178.60015 * 11 10 2 13 13 N 1.46921 * 108.76892 * 54.65846 * 12 11 10 14 14 C 1.36937 * 120.63720 * 126.39994 * 13 12 11 15 15 H 1.08003 * 119.99343 * 327.84188 * 14 13 12 16 16 C 1.38806 * 120.00452 * 147.83638 * 14 13 12 17 17 N 1.31612 * 120.00323 * 166.65908 * 16 14 13 18 18 Si 1.86804 * 119.99857 * 346.65885 * 16 14 13 19 19 H 1.48500 * 109.47029 * 86.62032 * 18 16 14 20 20 H 1.48498 * 109.47325 * 206.62240 * 18 16 14 21 21 H 1.48500 * 109.46986 * 326.62379 * 18 16 14 22 22 C 1.46927 * 118.73661 * 306.38053 * 13 12 11 23 23 C 1.53041 * 109.46040 * 299.96824 * 10 2 1 24 24 H 1.08997 * 109.47394 * 84.66562 * 1 2 3 25 25 H 1.09005 * 109.46639 * 204.66688 * 1 2 3 26 26 H 1.09004 * 109.46950 * 324.66407 * 1 2 3 27 27 H 1.07996 * 126.27351 * 359.97438 * 6 5 3 28 28 H 1.07995 * 125.42100 * 180.02562 * 8 7 6 29 29 H 1.09003 * 109.46165 * 179.97438 * 10 2 1 30 30 H 1.08991 * 109.49493 * 298.56743 * 11 10 2 31 31 H 1.09001 * 109.49589 * 58.66494 * 11 10 2 32 32 H 1.09002 * 109.60052 * 294.86161 * 12 11 10 33 33 H 1.09005 * 109.70159 * 174.50506 * 12 11 10 34 34 H 0.97001 * 120.00309 * 180.02562 * 17 16 14 35 35 H 1.09005 * 109.58532 * 293.82137 * 22 13 12 36 36 H 1.09000 * 109.70822 * 173.46294 * 22 13 12 37 37 H 1.09000 * 109.49851 * 301.33490 * 23 10 2 38 38 H 1.08999 * 109.49365 * 61.39998 * 23 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3519 1.1694 -0.0969 5 6 1.4100 2.4351 0.1169 6 6 1.9550 3.6778 0.2498 7 7 0.9464 4.5528 0.3173 8 6 -0.1848 3.9047 0.2374 9 8 0.0663 2.5975 0.1160 10 6 2.1975 -1.2688 -0.0006 11 6 1.8280 -2.0703 -1.2509 12 6 2.6220 -3.3803 -1.2658 13 7 2.3850 -4.0910 -0.0020 14 6 1.9519 -5.3901 -0.0025 15 1 1.3090 -5.7446 -0.7947 16 6 2.3393 -6.2514 1.0148 17 7 1.7281 -7.4069 1.1673 18 14 3.7283 -5.7702 2.1676 19 1 3.1826 -4.9698 3.2931 20 1 4.3765 -6.9955 2.7001 21 1 4.7298 -4.9628 1.4259 22 6 2.6218 -3.3815 1.2626 23 6 1.8282 -2.0713 1.2491 24 1 -0.3634 0.0955 -1.0232 25 1 -0.3633 -0.9340 0.4289 26 1 -0.3633 0.8384 0.5944 27 1 3.0084 3.9127 0.2892 28 1 -1.1667 4.3537 0.2642 29 1 3.2691 -1.0694 -0.0009 30 1 0.7609 -2.2914 -1.2391 31 1 2.0697 -1.4885 -2.1405 32 1 3.6850 -3.1625 -1.3688 33 1 2.2934 -3.9997 -2.1004 34 1 1.9985 -8.0086 1.8785 35 1 3.6849 -3.1638 1.3659 36 1 2.2926 -3.9994 2.0981 37 1 2.0699 -1.4903 2.1392 38 1 0.7608 -2.2919 1.2375 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001005791212.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:24 Heat of formation + Delta-G solvation = 4.195616 kcal Electronic energy + Delta-G solvation = -22227.011548 eV Core-core repulsion = 18878.723320 eV Total energy + Delta-G solvation = -3348.288228 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.46802 -41.21010 -39.24425 -36.94064 -35.86924 -34.39309 -32.53326 -32.02616 -31.17194 -28.13873 -27.13016 -25.13803 -24.42941 -23.79125 -23.26117 -21.51787 -20.66549 -18.92200 -18.73207 -18.13406 -17.92807 -17.56010 -16.95044 -16.23420 -15.95694 -15.45211 -15.35303 -15.30538 -14.73863 -14.65287 -14.61754 -14.26473 -14.07877 -13.76078 -13.48531 -13.16452 -12.66689 -12.55216 -12.53806 -12.20234 -12.03129 -11.83434 -11.79620 -11.52010 -11.45302 -11.30717 -10.74164 -10.27563 -9.73609 -8.91391 -8.16791 -5.56871 -0.23479 1.28262 1.32879 1.40940 1.41581 1.49367 1.91259 1.98316 2.39886 3.09109 3.24413 3.27864 3.47952 3.77647 3.86962 3.89869 4.12316 4.19016 4.27617 4.39209 4.44824 4.51079 4.58296 4.62508 4.68144 4.81179 4.87638 4.91311 4.99749 5.03831 5.12105 5.27374 5.36603 5.38593 5.89192 6.10748 6.14512 6.50415 6.80017 6.90220 7.58804 8.01283 9.02972 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.037661 B = 0.004114 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.294178 B = 6804.018617 C = 6934.778086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.594 5.594 3 C 0.600 3.400 4 O -0.557 6.557 5 C -0.121 4.121 6 C 0.051 3.949 7 N -0.527 5.527 8 C 0.222 3.778 9 O -0.183 6.183 10 C 0.152 3.848 11 C -0.125 4.125 12 C 0.146 3.854 13 N -0.620 5.620 14 C -0.248 4.248 15 H 0.055 0.945 16 C -0.030 4.030 17 N -0.960 5.960 18 Si 0.949 3.051 19 H -0.269 1.269 20 H -0.312 1.312 21 H -0.266 1.266 22 C 0.119 3.881 23 C -0.128 4.128 24 H 0.072 0.928 25 H 0.083 0.917 26 H 0.095 0.905 27 H 0.198 0.802 28 H 0.307 0.693 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.031 0.969 33 H 0.065 0.935 34 H 0.262 0.738 35 H 0.030 0.970 36 H 0.059 0.941 37 H 0.072 0.928 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.158 23.322 -1.647 24.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.324 5.324 3 C 0.388 3.612 4 O -0.438 6.438 5 C -0.176 4.176 6 C -0.092 4.092 7 N -0.255 5.255 8 C -0.002 4.002 9 O -0.070 6.070 10 C 0.049 3.951 11 C -0.165 4.165 12 C 0.021 3.979 13 N -0.345 5.345 14 C -0.377 4.377 15 H 0.073 0.927 16 C -0.225 4.225 17 N -0.606 5.606 18 Si 0.778 3.222 19 H -0.195 1.195 20 H -0.241 1.241 21 H -0.190 1.190 22 C -0.006 4.006 23 C -0.168 4.168 24 H 0.091 0.909 25 H 0.101 0.899 26 H 0.113 0.887 27 H 0.215 0.785 28 H 0.322 0.678 29 H 0.102 0.898 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.049 0.951 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.047 0.953 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.562 23.764 -1.580 24.457 hybrid contribution 0.592 -1.149 0.569 1.412 sum -4.970 22.615 -1.011 23.176 Atomic orbital electron populations 1.22211 0.77034 1.04476 1.03546 1.47967 1.08711 1.04872 1.70822 1.16769 0.85813 0.81789 0.76801 1.90864 1.13728 1.86429 1.52797 1.22746 0.81265 0.96963 1.16669 1.23753 1.01199 0.86878 0.97325 1.70515 0.99125 1.35082 1.20755 1.29711 1.01733 0.76229 0.92535 1.84731 1.23023 1.30498 1.68754 1.20974 0.96860 0.81496 0.95742 1.22188 1.01394 0.96066 0.96817 1.21056 0.96939 0.92031 0.87901 1.44477 1.78684 1.09982 1.01314 1.18853 1.22761 0.85952 1.10166 0.92710 1.25990 1.00342 0.95175 1.01027 1.69891 1.43788 1.12015 1.34887 0.85945 0.81081 0.75701 0.79451 1.19540 1.24072 1.19049 1.21419 0.97069 0.92983 0.89141 1.22227 1.01510 0.95730 0.97336 0.90906 0.89864 0.88730 0.78529 0.67802 0.89833 0.91096 0.90464 0.95101 0.91655 0.92883 0.95261 0.92327 0.90946 0.90758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.28 8.82 127.77 1.13 2.40 16 2 N -0.59 -15.11 2.76 -827.08 -2.28 -17.39 16 3 C 0.60 16.45 7.64 86.46 0.66 17.11 16 4 O -0.56 -19.01 16.24 -4.31 -0.07 -19.08 16 5 C -0.12 -2.62 6.81 24.04 0.16 -2.45 16 6 C 0.05 1.05 11.67 83.97 0.98 2.03 16 7 N -0.53 -9.32 11.26 -315.09 -3.55 -12.86 16 8 C 0.22 2.26 13.21 130.42 1.72 3.98 16 9 O -0.18 -2.77 7.44 -7.15 -0.05 -2.82 16 10 C 0.15 4.61 2.47 45.02 0.11 4.72 16 11 C -0.12 -3.76 5.34 30.67 0.16 -3.60 16 12 C 0.15 5.50 6.52 86.36 0.56 6.06 16 13 N -0.62 -28.42 2.73 -699.09 -1.91 -30.33 16 14 C -0.25 -13.76 10.05 84.03 0.84 -12.92 16 15 H 0.06 3.32 8.06 -2.91 -0.02 3.29 16 16 C -0.03 -1.76 5.33 84.86 0.45 -1.31 16 17 N -0.96 -59.73 13.97 21.65 0.30 -59.42 16 18 Si 0.95 46.52 24.26 68.60 1.66 48.19 16 19 H -0.27 -12.28 6.44 99.48 0.64 -11.64 16 20 H -0.31 -15.59 7.11 99.48 0.71 -14.88 16 21 H -0.27 -12.68 6.62 99.48 0.66 -12.02 16 22 C 0.12 4.95 4.16 86.36 0.36 5.31 16 23 C -0.13 -4.17 5.32 30.67 0.16 -4.01 16 24 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.08 1.59 6.47 -2.38 -0.02 1.58 16 26 H 0.09 1.47 5.22 -2.39 -0.01 1.46 16 27 H 0.20 3.75 8.06 -2.91 -0.02 3.72 16 28 H 0.31 -0.78 8.06 -2.91 -0.02 -0.80 16 29 H 0.08 2.86 6.91 -2.39 -0.02 2.84 16 30 H 0.07 2.10 7.72 -2.39 -0.02 2.08 16 31 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.03 1.14 8.14 -2.39 -0.02 1.13 16 33 H 0.06 2.47 7.93 -2.38 -0.02 2.45 16 34 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 35 H 0.03 1.22 6.94 -2.38 -0.02 1.20 16 36 H 0.06 2.66 4.48 -2.39 -0.01 2.65 16 37 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.07 2.36 6.72 -2.39 -0.02 2.34 16 Total: -1.00 -73.27 303.60 2.37 -70.89 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: 0.96 Total: 5.51 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: 7.31 Total: 17.32 kcal Atomic # 7 Polarization: -112.57 SS G_CDS: -7.44 Total: -120.01 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.12 Total: -21.90 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 1.66 Total: 48.19 kcal Total: -73.27 2.37 -70.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005791212.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.088 kcal (2) G-P(sol) polarization free energy of solvation -73.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds