Wall clock time and date at job start Tue Mar 31 2020 01:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36944 * 119.99519 * 2 1 4 4 H 1.08005 * 119.99316 * 205.08943 * 3 2 1 5 5 C 1.38807 * 120.00064 * 25.07801 * 3 2 1 6 6 N 1.31618 * 120.00204 * 10.09020 * 5 3 2 7 7 Si 1.86795 * 119.99883 * 190.08482 * 5 3 2 8 8 H 1.48498 * 109.47312 * 90.00684 * 7 5 3 9 9 H 1.48501 * 109.47262 * 210.00470 * 7 5 3 10 10 H 1.48499 * 109.47586 * 330.00469 * 7 5 3 11 11 C 1.46497 * 120.00279 * 179.97438 * 2 1 3 12 12 H 1.09009 * 109.52308 * 180.08279 * 11 2 1 13 13 C 1.53041 * 109.50028 * 300.15932 * 11 2 1 14 14 C 1.53039 * 109.54039 * 181.31740 * 13 11 2 15 15 C 1.53629 * 109.23938 * 298.51591 * 14 13 11 16 16 N 1.46925 * 108.54619 * 54.85461 * 15 14 13 17 17 C 1.34781 * 120.62967 * 126.36709 * 16 15 14 18 18 O 1.21490 * 119.99760 * 4.53043 * 17 16 15 19 19 C 1.48327 * 119.99903 * 184.53279 * 17 16 15 20 20 C 1.42264 * 126.93842 * 174.00867 * 19 17 16 21 21 C 1.35314 * 103.92480 * 179.97438 * 20 19 17 22 22 O 1.34023 * 106.66640 * 359.97438 * 21 20 19 23 23 N 1.20897 * 111.84449 * 0.02562 * 22 21 20 24 24 C 1.46923 * 118.73887 * 306.09601 * 16 15 14 25 25 H 1.09003 * 109.47302 * 265.79393 * 1 2 3 26 26 H 1.08996 * 109.47414 * 25.80428 * 1 2 3 27 27 H 1.08999 * 109.46788 * 145.80381 * 1 2 3 28 28 H 0.97004 * 120.00196 * 179.97438 * 6 5 3 29 29 H 1.08997 * 109.46205 * 301.34468 * 13 11 2 30 30 H 1.09001 * 109.45517 * 61.31100 * 13 11 2 31 31 H 1.09003 * 109.49789 * 58.58640 * 14 13 11 32 32 H 1.09000 * 109.50031 * 178.68752 * 14 13 11 33 33 H 1.08999 * 109.74010 * 295.11411 * 15 14 13 34 34 H 1.09006 * 109.66522 * 174.54863 * 15 14 13 35 35 H 1.08004 * 128.03879 * 359.93451 * 20 19 17 36 36 H 1.08003 * 126.66869 * 180.02562 * 21 20 19 37 37 H 1.08999 * 109.58737 * 173.64825 * 24 16 15 38 38 H 1.09002 * 109.58321 * 293.92908 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1532 1.2301 -0.3966 5 6 1.5536 2.3314 0.5095 6 7 0.4184 2.2446 1.1698 7 14 2.3629 3.9961 0.2582 8 1 1.8690 4.6011 -1.0048 9 1 2.0272 4.8868 1.3980 10 1 3.8359 3.8240 0.1817 11 6 2.1975 -1.2687 0.0006 12 1 3.2694 -1.0704 0.0020 13 6 1.8253 -2.0729 1.2483 14 6 2.6147 -3.3839 1.2665 15 6 2.2453 -4.2146 0.0281 16 7 2.4684 -3.3929 -1.1693 17 6 3.2414 -3.8437 -2.1772 18 8 3.6940 -4.9705 -2.1383 19 6 3.5393 -2.9642 -3.3338 20 6 4.4253 -3.2404 -4.4121 21 6 4.3428 -2.1378 -5.1920 22 8 3.4757 -1.3085 -4.5948 23 7 3.0391 -1.7766 -3.5692 24 6 1.8280 -2.0730 -1.2497 25 1 -0.3634 -0.0754 1.0249 26 1 -0.3634 0.9251 -0.4473 27 1 -0.3633 -0.8500 -0.5776 28 1 0.0021 3.0450 1.5262 29 1 2.0646 -1.4925 2.1393 30 1 0.7577 -2.2923 1.2337 31 1 3.6826 -3.1657 1.2560 32 1 2.3665 -3.9455 2.1671 33 1 1.1966 -4.5070 0.0804 34 1 2.8731 -5.1046 -0.0173 35 1 5.0250 -4.1245 -4.5709 36 1 4.8721 -1.9607 -6.1166 37 1 2.1803 -1.5495 -2.1384 38 1 0.7461 -2.1945 -1.3020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027317590.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:47 Heat of formation + Delta-G solvation = 72.211105 kcal Electronic energy + Delta-G solvation = -22628.898341 eV Core-core repulsion = 19283.559486 eV Total energy + Delta-G solvation = -3345.338855 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.08241 -39.92554 -37.50101 -34.94887 -34.11878 -32.60885 -31.77313 -31.16951 -28.68677 -26.03773 -25.96935 -23.96043 -23.40903 -22.91676 -21.48653 -19.98564 -19.05133 -17.75017 -17.65534 -17.06596 -16.64808 -15.79029 -15.15744 -14.79378 -14.41290 -14.07785 -13.80152 -13.61451 -13.43084 -13.31320 -12.77172 -12.64345 -12.33931 -12.04384 -11.42954 -11.02155 -10.93444 -10.86102 -10.57165 -10.45322 -10.36247 -10.31035 -10.20212 -9.95143 -9.85763 -9.82018 -9.60162 -8.60485 -8.38870 -6.72045 -5.74289 -3.20612 1.17648 1.66513 2.85900 3.16765 3.24241 3.38470 3.44696 3.45880 3.95504 4.44431 4.55752 4.92420 5.02743 5.23038 5.25481 5.32204 5.36024 5.46240 5.57368 5.70212 5.72163 5.77825 5.91139 6.09136 6.22024 6.33341 6.38000 6.47500 6.75581 6.79041 6.93798 7.02602 7.38871 7.46422 7.70178 7.81341 7.99111 8.22436 8.42364 9.23838 9.85495 10.35658 11.32108 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.016443 B = 0.006334 C = 0.004915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.409584 B = 4419.698366 C = 5695.945048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.589 5.589 3 C -0.253 4.253 4 H 0.066 0.934 5 C 0.004 3.996 6 N -0.908 5.908 7 Si 0.905 3.095 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.280 1.280 11 C 0.172 3.828 12 H 0.062 0.938 13 C -0.134 4.134 14 C -0.131 4.131 15 C 0.113 3.887 16 N -0.587 5.587 17 C 0.595 3.405 18 O -0.541 6.541 19 C -0.027 4.027 20 C -0.188 4.188 21 C -0.061 4.061 22 O 0.118 5.882 23 N -0.310 5.310 24 C 0.058 3.942 25 H 0.018 0.982 26 H 0.058 0.942 27 H -0.007 1.007 28 H 0.253 0.747 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.179 0.821 36 H 0.222 0.778 37 H 0.127 0.873 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.402 -10.752 -9.162 15.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.311 5.311 3 C -0.383 4.383 4 H 0.084 0.916 5 C -0.194 4.194 6 N -0.553 5.553 7 Si 0.735 3.265 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.205 1.205 11 C 0.063 3.937 12 H 0.080 0.920 13 C -0.174 4.174 14 C -0.170 4.170 15 C -0.009 4.009 16 N -0.319 5.319 17 C 0.381 3.619 18 O -0.418 6.418 19 C -0.186 4.186 20 C -0.210 4.210 21 C -0.142 4.142 22 O 0.045 5.955 23 N -0.013 5.013 24 C -0.066 4.066 25 H 0.036 0.964 26 H 0.077 0.923 27 H 0.012 0.988 28 H 0.063 0.937 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.107 0.893 35 H 0.196 0.804 36 H 0.238 0.762 37 H 0.144 0.856 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.632 -10.434 -8.355 14.147 hybrid contribution 0.817 0.404 -0.241 0.942 sum 5.448 -10.030 -8.596 14.289 Atomic orbital electron populations 1.20778 0.82670 0.97199 0.97622 1.43835 1.01752 0.99891 1.85630 1.19215 0.99471 0.85810 1.33764 0.91583 1.25045 0.97846 0.98635 0.97912 1.70054 1.19002 1.27571 1.38627 0.86243 0.78902 0.84070 0.77253 1.21402 1.21741 1.20520 1.20537 0.96267 0.86380 0.90553 0.91956 1.22133 0.99482 0.94748 1.00989 1.22010 1.01020 0.97339 0.96601 1.21783 1.01455 0.94093 0.83568 1.48098 1.47082 1.19408 1.17293 1.17003 0.78855 0.85215 0.80845 1.90738 1.53685 1.18544 1.78832 1.23627 1.01269 0.93785 0.99870 1.22704 1.02697 1.01667 0.93942 1.26030 0.96542 0.90286 1.01355 1.84898 1.43809 1.40450 1.26297 1.74146 1.17335 1.10231 0.99550 1.23440 0.97749 0.81151 1.04281 0.96370 0.92320 0.98838 0.93727 0.91397 0.92422 0.91816 0.91108 0.91318 0.89318 0.80396 0.76184 0.85582 0.91535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.95 8.09 59.85 0.48 4.44 16 2 N -0.59 -14.65 2.81 -173.35 -0.49 -15.14 16 3 C -0.25 -6.94 9.57 -15.06 -0.14 -7.08 16 4 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 5 C 0.00 0.11 5.10 -17.43 -0.09 0.02 16 6 N -0.91 -26.27 10.73 55.49 0.60 -25.67 16 7 Si 0.91 21.85 29.57 -169.99 -5.03 16.83 16 8 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 9 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 C 0.17 3.58 2.75 -67.81 -0.19 3.40 16 12 H 0.06 1.38 7.88 -51.92 -0.41 0.97 16 13 C -0.13 -2.46 5.14 -26.69 -0.14 -2.60 16 14 C -0.13 -1.94 6.10 -26.38 -0.16 -2.10 16 15 C 0.11 1.67 6.45 -3.48 -0.02 1.64 16 16 N -0.59 -9.94 2.97 -173.43 -0.51 -10.45 16 17 C 0.60 10.23 7.72 -12.11 -0.09 10.14 16 18 O -0.54 -9.99 16.39 5.37 0.09 -9.90 16 19 C -0.03 -0.42 6.95 -82.53 -0.57 -0.99 16 20 C -0.19 -2.14 11.00 -39.08 -0.43 -2.57 16 21 C -0.06 -0.55 12.28 29.69 0.36 -0.19 16 22 O 0.12 1.55 11.18 17.23 0.19 1.74 16 23 N -0.31 -4.99 8.50 33.29 0.28 -4.70 16 24 C 0.06 1.08 5.68 -3.71 -0.02 1.05 16 25 H 0.02 0.47 7.82 -51.93 -0.41 0.06 16 26 H 0.06 1.56 6.77 -51.93 -0.35 1.21 16 27 H -0.01 -0.15 6.36 -51.93 -0.33 -0.48 16 28 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.06 1.06 7.71 -51.93 -0.40 0.66 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.09 1.27 7.03 -51.93 -0.37 0.91 16 35 H 0.18 1.65 8.06 -52.48 -0.42 1.23 16 36 H 0.22 0.81 8.06 -52.48 -0.42 0.38 16 37 H 0.13 2.46 3.75 -74.38 -0.28 2.18 16 38 H 0.07 1.26 6.50 -51.93 -0.34 0.92 16 LS Contribution 308.91 15.07 4.66 4.66 Total: -1.00 -32.03 308.91 -6.18 -38.21 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: -4.96 Total: -0.73 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: -1.01 Total: 5.17 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: -0.12 Total: -55.97 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: 0.28 Total: -8.16 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.83 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.03 -6.18 -38.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027317590.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.421 kcal (2) G-P(sol) polarization free energy of solvation -32.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds