Wall clock time and date at job start Tue Mar 31 2020 01:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36944 * 119.99519 * 2 1 4 4 H 1.08005 * 119.99316 * 205.08943 * 3 2 1 5 5 C 1.38807 * 120.00064 * 25.07801 * 3 2 1 6 6 N 1.31618 * 120.00204 * 10.09020 * 5 3 2 7 7 Si 1.86795 * 119.99883 * 190.08482 * 5 3 2 8 8 H 1.48498 * 109.47312 * 90.00684 * 7 5 3 9 9 H 1.48501 * 109.47262 * 210.00470 * 7 5 3 10 10 H 1.48499 * 109.47586 * 330.00469 * 7 5 3 11 11 C 1.46497 * 120.00279 * 179.97438 * 2 1 3 12 12 H 1.09009 * 109.52308 * 180.08279 * 11 2 1 13 13 C 1.53041 * 109.50028 * 300.15932 * 11 2 1 14 14 C 1.53039 * 109.54039 * 181.31740 * 13 11 2 15 15 C 1.53629 * 109.23938 * 298.51591 * 14 13 11 16 16 N 1.46925 * 108.54619 * 54.85461 * 15 14 13 17 17 C 1.34781 * 120.62967 * 126.36709 * 16 15 14 18 18 O 1.21490 * 119.99760 * 4.53043 * 17 16 15 19 19 C 1.48327 * 119.99903 * 184.53279 * 17 16 15 20 20 C 1.42264 * 126.93842 * 174.00867 * 19 17 16 21 21 C 1.35314 * 103.92480 * 179.97438 * 20 19 17 22 22 O 1.34023 * 106.66640 * 359.97438 * 21 20 19 23 23 N 1.20897 * 111.84449 * 0.02562 * 22 21 20 24 24 C 1.46923 * 118.73887 * 306.09601 * 16 15 14 25 25 H 1.09003 * 109.47302 * 265.79393 * 1 2 3 26 26 H 1.08996 * 109.47414 * 25.80428 * 1 2 3 27 27 H 1.08999 * 109.46788 * 145.80381 * 1 2 3 28 28 H 0.97004 * 120.00196 * 179.97438 * 6 5 3 29 29 H 1.08997 * 109.46205 * 301.34468 * 13 11 2 30 30 H 1.09001 * 109.45517 * 61.31100 * 13 11 2 31 31 H 1.09003 * 109.49789 * 58.58640 * 14 13 11 32 32 H 1.09000 * 109.50031 * 178.68752 * 14 13 11 33 33 H 1.08999 * 109.74010 * 295.11411 * 15 14 13 34 34 H 1.09006 * 109.66522 * 174.54863 * 15 14 13 35 35 H 1.08004 * 128.03879 * 359.93451 * 20 19 17 36 36 H 1.08003 * 126.66869 * 180.02562 * 21 20 19 37 37 H 1.08999 * 109.58737 * 173.64825 * 24 16 15 38 38 H 1.09002 * 109.58321 * 293.92908 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1532 1.2301 -0.3966 5 6 1.5536 2.3314 0.5095 6 7 0.4184 2.2446 1.1698 7 14 2.3629 3.9961 0.2582 8 1 1.8690 4.6011 -1.0048 9 1 2.0272 4.8868 1.3980 10 1 3.8359 3.8240 0.1817 11 6 2.1975 -1.2687 0.0006 12 1 3.2694 -1.0704 0.0020 13 6 1.8253 -2.0729 1.2483 14 6 2.6147 -3.3839 1.2665 15 6 2.2453 -4.2146 0.0281 16 7 2.4684 -3.3929 -1.1693 17 6 3.2414 -3.8437 -2.1772 18 8 3.6940 -4.9705 -2.1383 19 6 3.5393 -2.9642 -3.3338 20 6 4.4253 -3.2404 -4.4121 21 6 4.3428 -2.1378 -5.1920 22 8 3.4757 -1.3085 -4.5948 23 7 3.0391 -1.7766 -3.5692 24 6 1.8280 -2.0730 -1.2497 25 1 -0.3634 -0.0754 1.0249 26 1 -0.3634 0.9251 -0.4473 27 1 -0.3633 -0.8500 -0.5776 28 1 0.0021 3.0450 1.5262 29 1 2.0646 -1.4925 2.1393 30 1 0.7577 -2.2923 1.2337 31 1 3.6826 -3.1657 1.2560 32 1 2.3665 -3.9455 2.1671 33 1 1.1966 -4.5070 0.0804 34 1 2.8731 -5.1046 -0.0173 35 1 5.0250 -4.1245 -4.5709 36 1 4.8721 -1.9607 -6.1166 37 1 2.1803 -1.5495 -2.1384 38 1 0.7461 -2.1945 -1.3020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027317590.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:47 Heat of formation + Delta-G solvation = 51.749669 kcal Electronic energy + Delta-G solvation = -22629.785616 eV Core-core repulsion = 19283.559486 eV Total energy + Delta-G solvation = -3346.226130 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -46.11267 -41.28161 -39.03530 -36.70758 -35.19751 -33.96414 -33.30755 -32.49759 -30.39468 -28.05408 -27.30672 -25.43226 -24.97321 -23.90266 -22.90665 -21.39961 -20.41210 -19.01147 -18.77633 -18.59187 -18.22186 -17.09711 -16.95639 -16.29319 -15.77735 -15.53158 -15.28928 -15.12251 -14.75600 -14.49428 -14.30477 -14.08906 -13.77597 -13.62735 -12.96564 -12.88575 -12.66328 -12.50377 -12.32714 -12.10380 -11.97100 -11.78811 -11.65842 -11.52439 -11.50717 -11.11606 -10.70827 -10.62266 -9.87270 -8.73394 -7.85401 -5.33943 0.09162 0.81853 1.45845 1.47028 1.55450 1.66694 2.00288 2.33172 2.49848 2.83785 3.29714 3.43183 3.70612 3.84809 3.94314 4.02243 4.08032 4.18016 4.24424 4.30989 4.55861 4.61358 4.68240 4.81011 4.88151 4.92510 4.98268 5.02511 5.06415 5.24542 5.37843 5.41600 5.49274 5.62381 5.69397 6.10619 6.34529 6.76242 7.14428 7.18289 7.84072 8.29254 9.19220 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.016443 B = 0.006334 C = 0.004915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.409584 B = 4419.698366 C = 5695.945048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.604 5.604 3 C -0.263 4.263 4 H 0.063 0.937 5 C -0.047 4.047 6 N -0.936 5.936 7 Si 0.968 3.032 8 H -0.283 1.283 9 H -0.293 1.293 10 H -0.271 1.271 11 C 0.171 3.829 12 H 0.043 0.957 13 C -0.125 4.125 14 C -0.118 4.118 15 C 0.111 3.889 16 N -0.590 5.590 17 C 0.592 3.408 18 O -0.557 6.557 19 C -0.058 4.058 20 C -0.198 4.198 21 C -0.027 4.027 22 O 0.115 5.885 23 N -0.349 5.349 24 C 0.072 3.928 25 H -0.003 1.003 26 H 0.030 0.970 27 H 0.022 0.978 28 H 0.249 0.751 29 H 0.044 0.956 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.198 0.802 36 H 0.280 0.720 37 H 0.124 0.876 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.645 -11.562 -10.688 17.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.327 5.327 3 C -0.393 4.393 4 H 0.080 0.920 5 C -0.242 4.242 6 N -0.582 5.582 7 Si 0.796 3.204 8 H -0.210 1.210 9 H -0.220 1.220 10 H -0.196 1.196 11 C 0.063 3.937 12 H 0.062 0.938 13 C -0.165 4.165 14 C -0.157 4.157 15 C -0.011 4.011 16 N -0.322 5.322 17 C 0.379 3.621 18 O -0.436 6.436 19 C -0.215 4.215 20 C -0.221 4.221 21 C -0.107 4.107 22 O 0.042 5.958 23 N -0.051 5.051 24 C -0.052 4.052 25 H 0.016 0.984 26 H 0.049 0.951 27 H 0.040 0.960 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.120 0.880 33 H 0.103 0.897 34 H 0.115 0.885 35 H 0.215 0.785 36 H 0.295 0.705 37 H 0.141 0.859 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.887 -11.283 -9.877 16.109 hybrid contribution 0.503 0.604 0.131 0.797 sum 6.390 -10.679 -9.746 15.807 Atomic orbital electron populations 1.20492 0.82705 0.96859 0.96482 1.43992 1.01958 1.00741 1.85966 1.19462 0.99459 0.87149 1.33232 0.91964 1.25766 0.98559 1.01836 0.98063 1.70205 1.20263 1.28060 1.39721 0.85261 0.78360 0.79880 0.76911 1.20999 1.21968 1.19624 1.20626 0.94744 0.85520 0.92785 0.93817 1.21969 1.00050 0.95976 0.98491 1.21927 0.99985 0.95579 0.98213 1.21944 1.02659 0.93912 0.82545 1.48134 1.47093 1.18826 1.18152 1.17277 0.78275 0.85290 0.81244 1.90713 1.54263 1.19233 1.79391 1.23739 1.03081 0.94006 1.00647 1.23039 1.02608 1.03331 0.93108 1.27044 0.93937 0.88088 1.01613 1.84833 1.44356 1.40989 1.25661 1.74060 1.19018 1.10882 1.01159 1.23083 0.97489 0.81823 1.02819 0.98434 0.95087 0.96008 0.94156 0.93688 0.92360 0.92299 0.88001 0.89742 0.88489 0.78495 0.70500 0.85928 0.91833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.96 8.09 127.77 1.03 9.99 16 2 N -0.60 -30.66 2.81 -702.34 -1.97 -32.63 16 3 C -0.26 -14.68 9.57 84.03 0.80 -13.88 16 4 H 0.06 3.45 7.83 -2.91 -0.02 3.43 16 5 C -0.05 -2.65 5.10 84.86 0.43 -2.21 16 6 N -0.94 -55.41 10.73 21.65 0.23 -55.18 16 7 Si 0.97 45.38 29.57 68.60 2.03 47.41 16 8 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 9 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 10 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 11 C 0.17 7.23 2.75 45.07 0.12 7.35 16 12 H 0.04 1.98 7.88 -2.38 -0.02 1.96 16 13 C -0.13 -4.60 5.14 30.62 0.16 -4.44 16 14 C -0.12 -3.34 6.10 30.82 0.19 -3.15 16 15 C 0.11 3.08 6.45 86.51 0.56 3.64 16 16 N -0.59 -19.61 2.97 -820.92 -2.43 -22.05 16 17 C 0.59 20.00 7.72 86.93 0.67 20.67 16 18 O -0.56 -20.07 16.39 -3.68 -0.06 -20.13 16 19 C -0.06 -1.74 6.95 42.96 0.30 -1.44 16 20 C -0.20 -4.04 11.00 22.60 0.25 -3.79 16 21 C -0.03 -0.38 12.28 67.14 0.82 0.44 16 22 O 0.11 2.80 11.18 71.83 0.80 3.60 16 23 N -0.35 -11.00 8.50 -49.52 -0.42 -11.42 16 24 C 0.07 2.70 5.68 86.36 0.49 3.19 16 25 H 0.00 -0.14 7.82 -2.39 -0.02 -0.16 16 26 H 0.03 1.68 6.77 -2.39 -0.02 1.67 16 27 H 0.02 0.94 6.36 -2.39 -0.02 0.93 16 28 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 29 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.06 2.12 7.71 -2.39 -0.02 2.10 16 31 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.10 2.60 7.03 -2.38 -0.02 2.59 16 35 H 0.20 3.11 8.06 -2.91 -0.02 3.08 16 36 H 0.28 0.40 8.06 -2.91 -0.02 0.37 16 37 H 0.12 4.83 3.75 -46.71 -0.18 4.66 16 38 H 0.06 2.38 6.50 -2.39 -0.02 2.37 16 Total: -1.00 -71.42 308.91 4.91 -66.51 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: 0.91 Total: 7.54 kcal Atomic # 6 Polarization: 10.53 SS G_CDS: 5.83 Total: 16.36 kcal Atomic # 7 Polarization: -116.69 SS G_CDS: -4.60 Total: -121.28 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: 0.74 Total: -16.53 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -71.42 4.91 -66.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027317590.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.257 kcal (2) G-P(sol) polarization free energy of solvation -71.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds