Wall clock time and date at job start Tue Mar 31 2020 01:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36931 * 120.00100 * 2 1 4 4 H 1.08003 * 119.99949 * 205.10423 * 3 2 1 5 5 C 1.38804 * 120.00433 * 25.09938 * 3 2 1 6 6 N 1.31628 * 120.00002 * 10.05778 * 5 3 2 7 7 Si 1.86795 * 120.00457 * 190.05940 * 5 3 2 8 8 H 1.48498 * 109.47252 * 89.99998 * 7 5 3 9 9 H 1.48509 * 109.47361 * 209.99957 * 7 5 3 10 10 H 1.48502 * 109.47093 * 329.99656 * 7 5 3 11 11 C 1.46504 * 119.99525 * 179.97438 * 2 1 3 12 12 H 1.09006 * 109.49443 * 180.02562 * 11 2 1 13 13 C 1.53037 * 109.49861 * 60.00333 * 11 2 1 14 14 C 1.53047 * 109.53676 * 178.68254 * 13 11 2 15 15 C 1.53193 * 109.31264 * 61.35871 * 14 13 11 16 16 N 1.46924 * 108.89794 * 305.29805 * 15 14 13 17 17 C 1.34771 * 120.62890 * 233.68642 * 16 15 14 18 18 O 1.21495 * 120.00069 * 355.13325 * 17 16 15 19 19 C 1.48327 * 120.00170 * 175.14654 * 17 16 15 20 20 C 1.42278 * 126.94188 * 185.88708 * 19 17 16 21 21 C 1.35313 * 103.92131 * 179.97438 * 20 19 17 22 22 O 1.34014 * 106.67371 * 359.97438 * 21 20 19 23 23 N 1.20912 * 111.83951 * 359.71313 * 22 21 20 24 24 C 1.47205 * 118.55575 * 53.53492 * 16 15 14 25 25 H 1.09003 * 109.47025 * 265.81879 * 1 2 3 26 26 H 1.09000 * 109.46484 * 25.81801 * 1 2 3 27 27 H 1.08998 * 109.47172 * 145.81859 * 1 2 3 28 28 H 0.96992 * 120.00372 * 179.97438 * 6 5 3 29 29 H 1.08992 * 109.46277 * 58.66014 * 13 11 2 30 30 H 1.08996 * 109.45887 * 298.69596 * 13 11 2 31 31 H 1.09004 * 109.49280 * 301.40940 * 14 13 11 32 32 H 1.08996 * 109.52106 * 181.33344 * 14 13 11 33 33 H 1.09009 * 109.58264 * 65.15568 * 15 14 13 34 34 H 1.08997 * 109.58680 * 185.43118 * 15 14 13 35 35 H 1.07994 * 128.03407 * 359.97438 * 20 19 17 36 36 H 1.07996 * 126.66464 * 180.02562 * 21 20 19 37 37 H 1.08994 * 109.53125 * 186.67887 * 24 16 15 38 38 H 1.08996 * 109.56093 * 66.30383 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1532 1.2300 -0.3968 5 6 1.5541 2.3312 0.5099 6 7 0.4187 2.2445 1.1700 7 14 2.3638 3.9958 0.2593 8 1 1.8702 4.6013 -1.0036 9 1 2.0282 4.8863 1.3994 10 1 3.8368 3.8233 0.1830 11 6 2.1975 -1.2688 0.0006 12 1 3.2693 -1.0702 0.0009 13 6 1.8282 -2.0723 -1.2484 14 6 2.6175 -3.3835 -1.2654 15 6 2.2496 -4.2124 -0.0308 16 7 2.4660 -3.3966 1.1718 17 6 3.2375 -3.8501 2.1795 18 8 3.6897 -4.9770 2.1386 19 6 3.5346 -2.9734 3.3385 20 6 4.4177 -3.2535 4.4183 21 6 4.3363 -2.1517 5.1996 22 8 3.4734 -1.3190 4.6014 23 7 3.0421 -1.7822 3.5711 24 6 1.8248 -2.0738 1.2495 25 1 -0.3633 -0.0749 1.0250 26 1 -0.3632 0.9251 -0.4476 27 1 -0.3633 -0.8501 -0.5773 28 1 0.0026 3.0448 1.5267 29 1 2.0698 -1.4915 -2.1385 30 1 0.7606 -2.2915 -1.2367 31 1 3.6854 -3.1653 -1.2522 32 1 2.3721 -3.9447 -2.1670 33 1 1.2019 -4.5080 -0.0882 34 1 2.8783 -5.1017 0.0129 35 1 5.0144 -4.1395 4.5772 36 1 4.8647 -1.9770 6.1252 37 1 2.1750 -1.5508 2.1394 38 1 0.7426 -2.1950 1.2966 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027317591.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:50 Heat of formation + Delta-G solvation = 71.883555 kcal Electronic energy + Delta-G solvation = -22717.472992 eV Core-core repulsion = 19372.119933 eV Total energy + Delta-G solvation = -3345.353059 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.97158 -39.85981 -37.47899 -34.93528 -34.02204 -32.58015 -31.72712 -31.11342 -28.68549 -25.99666 -25.96486 -23.90455 -23.39122 -22.82472 -21.48660 -19.92779 -19.01940 -17.65249 -17.56982 -16.99478 -16.62178 -15.74853 -15.11068 -14.72942 -14.37363 -14.11271 -13.74933 -13.64084 -13.35242 -13.29283 -12.72453 -12.61133 -12.31862 -11.91069 -11.53709 -11.09834 -10.90991 -10.80651 -10.55327 -10.37164 -10.35490 -10.33303 -10.19989 -9.90493 -9.84577 -9.73941 -9.57407 -8.57166 -8.36515 -6.72069 -5.74232 -3.20589 1.28790 1.75133 2.93503 3.26017 3.32140 3.38237 3.44421 3.45678 4.04756 4.46680 4.61231 5.01039 5.08966 5.22703 5.27585 5.33039 5.39676 5.46688 5.58113 5.71604 5.75577 5.86123 5.94398 6.08516 6.18238 6.29827 6.37739 6.48627 6.72825 6.84430 6.93778 6.99837 7.38619 7.52582 7.69339 7.81111 8.07827 8.32020 8.42263 9.23708 9.85280 10.35774 11.31938 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.015368 B = 0.006860 C = 0.005175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.549726 B = 4080.681262 C = 5409.493895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.588 5.588 3 C -0.256 4.256 4 H 0.066 0.934 5 C 0.006 3.994 6 N -0.904 5.904 7 Si 0.905 3.095 8 H -0.288 1.288 9 H -0.290 1.290 10 H -0.280 1.280 11 C 0.171 3.829 12 H 0.062 0.938 13 C -0.135 4.135 14 C -0.130 4.130 15 C 0.113 3.887 16 N -0.589 5.589 17 C 0.596 3.404 18 O -0.543 6.543 19 C -0.031 4.031 20 C -0.189 4.189 21 C -0.063 4.063 22 O 0.122 5.878 23 N -0.304 5.304 24 C 0.060 3.940 25 H 0.017 0.983 26 H 0.058 0.942 27 H -0.005 1.005 28 H 0.253 0.747 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.178 0.822 36 H 0.221 0.779 37 H 0.130 0.870 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.308 -10.601 4.140 12.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.310 5.310 3 C -0.385 4.385 4 H 0.084 0.916 5 C -0.193 4.193 6 N -0.549 5.549 7 Si 0.735 3.265 8 H -0.215 1.215 9 H -0.217 1.217 10 H -0.205 1.205 11 C 0.062 3.938 12 H 0.080 0.920 13 C -0.175 4.175 14 C -0.168 4.168 15 C -0.009 4.009 16 N -0.321 5.321 17 C 0.382 3.618 18 O -0.421 6.421 19 C -0.190 4.190 20 C -0.211 4.211 21 C -0.144 4.144 22 O 0.048 5.952 23 N -0.006 5.006 24 C -0.064 4.064 25 H 0.036 0.964 26 H 0.077 0.923 27 H 0.013 0.987 28 H 0.063 0.937 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.195 0.805 36 H 0.237 0.763 37 H 0.147 0.853 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.539 -10.275 3.485 11.762 hybrid contribution 0.818 0.403 0.274 0.952 sum 5.357 -9.873 3.760 11.845 Atomic orbital electron populations 1.20790 0.82652 0.97331 0.97630 1.43880 1.01777 0.99885 1.85439 1.19201 0.99605 0.85738 1.33976 0.91595 1.25067 0.97831 0.98645 0.97732 1.70051 1.18881 1.27605 1.38348 0.86254 0.78928 0.84106 0.77223 1.21495 1.21652 1.20523 1.20596 0.96314 0.86331 0.90597 0.91983 1.22105 0.99731 0.95058 1.00597 1.21902 1.00991 0.97191 0.96764 1.21653 1.01473 0.94213 0.83605 1.48271 1.47244 1.19673 1.16928 1.17007 0.78766 0.85167 0.80862 1.90729 1.53831 1.18539 1.78964 1.23626 1.01650 0.93765 0.99938 1.22684 1.02735 1.01646 0.94038 1.26027 0.96621 0.90347 1.01411 1.84931 1.43921 1.40445 1.25905 1.74220 1.17039 1.10053 0.99247 1.23613 0.97550 0.80572 1.04659 0.96422 0.92308 0.98662 0.93682 0.91651 0.92194 0.91815 0.91039 0.91428 0.89377 0.80475 0.76260 0.85341 0.91779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.91 7.97 59.85 0.48 4.39 16 2 N -0.59 -14.59 2.81 -173.34 -0.49 -15.07 16 3 C -0.26 -6.98 9.57 -15.06 -0.14 -7.13 16 4 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 5 C 0.01 0.17 5.10 -17.43 -0.09 0.08 16 6 N -0.90 -26.05 10.73 55.49 0.60 -25.46 16 7 Si 0.90 21.78 29.56 -169.99 -5.03 16.75 16 8 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 9 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 C 0.17 3.56 2.75 -67.81 -0.19 3.37 16 12 H 0.06 1.37 7.88 -51.93 -0.41 0.96 16 13 C -0.14 -2.35 5.11 -26.69 -0.14 -2.48 16 14 C -0.13 -1.85 6.08 -26.61 -0.16 -2.01 16 15 C 0.11 1.67 6.41 -3.71 -0.02 1.65 16 16 N -0.59 -10.32 2.98 -173.48 -0.52 -10.84 16 17 C 0.60 10.72 7.72 -12.11 -0.09 10.62 16 18 O -0.54 -10.35 16.39 5.37 0.09 -10.26 16 19 C -0.03 -0.52 6.96 -82.53 -0.57 -1.09 16 20 C -0.19 -2.34 11.00 -39.07 -0.43 -2.77 16 21 C -0.06 -0.65 12.28 29.69 0.36 -0.29 16 22 O 0.12 1.81 11.18 17.25 0.19 2.00 16 23 N -0.30 -5.41 8.51 33.30 0.28 -5.13 16 24 C 0.06 1.18 5.70 -3.56 -0.02 1.16 16 25 H 0.02 0.46 7.82 -51.93 -0.41 0.05 16 26 H 0.06 1.56 6.77 -51.93 -0.35 1.21 16 27 H 0.00 -0.11 6.47 -51.93 -0.34 -0.44 16 28 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.06 1.03 6.74 -51.93 -0.35 0.68 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.92 8.14 -51.92 -0.42 0.50 16 34 H 0.09 1.28 7.03 -51.93 -0.37 0.91 16 35 H 0.18 1.79 8.06 -52.49 -0.42 1.37 16 36 H 0.22 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.13 2.76 3.78 -72.98 -0.28 2.48 16 38 H 0.06 1.29 7.51 -51.93 -0.39 0.90 16 LS Contribution 308.95 15.07 4.66 4.66 Total: -1.00 -31.97 308.95 -6.20 -38.17 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -4.97 Total: -0.30 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: -1.02 Total: 5.49 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: -0.13 Total: -56.50 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: 0.28 Total: -8.26 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.75 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.97 -6.20 -38.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027317591.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.053 kcal (2) G-P(sol) polarization free energy of solvation -31.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds