Wall clock time and date at job start Tue Mar 31 2020 01:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36931 * 120.00100 * 2 1 4 4 H 1.08003 * 119.99949 * 205.10423 * 3 2 1 5 5 C 1.38804 * 120.00433 * 25.09938 * 3 2 1 6 6 N 1.31628 * 120.00002 * 10.05778 * 5 3 2 7 7 Si 1.86795 * 120.00457 * 190.05940 * 5 3 2 8 8 H 1.48498 * 109.47252 * 89.99998 * 7 5 3 9 9 H 1.48509 * 109.47361 * 209.99957 * 7 5 3 10 10 H 1.48502 * 109.47093 * 329.99656 * 7 5 3 11 11 C 1.46504 * 119.99525 * 179.97438 * 2 1 3 12 12 H 1.09006 * 109.49443 * 180.02562 * 11 2 1 13 13 C 1.53037 * 109.49861 * 60.00333 * 11 2 1 14 14 C 1.53047 * 109.53676 * 178.68254 * 13 11 2 15 15 C 1.53193 * 109.31264 * 61.35871 * 14 13 11 16 16 N 1.46924 * 108.89794 * 305.29805 * 15 14 13 17 17 C 1.34771 * 120.62890 * 233.68642 * 16 15 14 18 18 O 1.21495 * 120.00069 * 355.13325 * 17 16 15 19 19 C 1.48327 * 120.00170 * 175.14654 * 17 16 15 20 20 C 1.42278 * 126.94188 * 185.88708 * 19 17 16 21 21 C 1.35313 * 103.92131 * 179.97438 * 20 19 17 22 22 O 1.34014 * 106.67371 * 359.97438 * 21 20 19 23 23 N 1.20912 * 111.83951 * 359.71313 * 22 21 20 24 24 C 1.47205 * 118.55575 * 53.53492 * 16 15 14 25 25 H 1.09003 * 109.47025 * 265.81879 * 1 2 3 26 26 H 1.09000 * 109.46484 * 25.81801 * 1 2 3 27 27 H 1.08998 * 109.47172 * 145.81859 * 1 2 3 28 28 H 0.96992 * 120.00372 * 179.97438 * 6 5 3 29 29 H 1.08992 * 109.46277 * 58.66014 * 13 11 2 30 30 H 1.08996 * 109.45887 * 298.69596 * 13 11 2 31 31 H 1.09004 * 109.49280 * 301.40940 * 14 13 11 32 32 H 1.08996 * 109.52106 * 181.33344 * 14 13 11 33 33 H 1.09009 * 109.58264 * 65.15568 * 15 14 13 34 34 H 1.08997 * 109.58680 * 185.43118 * 15 14 13 35 35 H 1.07994 * 128.03407 * 359.97438 * 20 19 17 36 36 H 1.07996 * 126.66464 * 180.02562 * 21 20 19 37 37 H 1.08994 * 109.53125 * 186.67887 * 24 16 15 38 38 H 1.08996 * 109.56093 * 66.30383 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1532 1.2300 -0.3968 5 6 1.5541 2.3312 0.5099 6 7 0.4187 2.2445 1.1700 7 14 2.3638 3.9958 0.2593 8 1 1.8702 4.6013 -1.0036 9 1 2.0282 4.8863 1.3994 10 1 3.8368 3.8233 0.1830 11 6 2.1975 -1.2688 0.0006 12 1 3.2693 -1.0702 0.0009 13 6 1.8282 -2.0723 -1.2484 14 6 2.6175 -3.3835 -1.2654 15 6 2.2496 -4.2124 -0.0308 16 7 2.4660 -3.3966 1.1718 17 6 3.2375 -3.8501 2.1795 18 8 3.6897 -4.9770 2.1386 19 6 3.5346 -2.9734 3.3385 20 6 4.4177 -3.2535 4.4183 21 6 4.3363 -2.1517 5.1996 22 8 3.4734 -1.3190 4.6014 23 7 3.0421 -1.7822 3.5711 24 6 1.8248 -2.0738 1.2495 25 1 -0.3633 -0.0749 1.0250 26 1 -0.3632 0.9251 -0.4476 27 1 -0.3633 -0.8501 -0.5773 28 1 0.0026 3.0448 1.5267 29 1 2.0698 -1.4915 -2.1385 30 1 0.7606 -2.2915 -1.2367 31 1 3.6854 -3.1653 -1.2522 32 1 2.3721 -3.9447 -2.1670 33 1 1.2019 -4.5080 -0.0882 34 1 2.8783 -5.1017 0.0129 35 1 5.0144 -4.1395 4.5772 36 1 4.8647 -1.9770 6.1252 37 1 2.1750 -1.5508 2.1394 38 1 0.7426 -2.1950 1.2966 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027317591.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:49 Heat of formation + Delta-G solvation = 51.388805 kcal Electronic energy + Delta-G solvation = -22718.361711 eV Core-core repulsion = 19372.119933 eV Total energy + Delta-G solvation = -3346.241778 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -46.11612 -41.25926 -39.02643 -36.69548 -35.19608 -33.97709 -33.27436 -32.48304 -30.39733 -28.03684 -27.30847 -25.40116 -24.98408 -23.91202 -22.90060 -21.38636 -20.38858 -19.03010 -18.78216 -18.55425 -18.20335 -17.16160 -16.88605 -16.25883 -15.78097 -15.51199 -15.27400 -15.17066 -14.74950 -14.44475 -14.30695 -14.07653 -13.77765 -13.54027 -13.12861 -12.84217 -12.58339 -12.48619 -12.22766 -12.16636 -12.07548 -11.67859 -11.63473 -11.51277 -11.50913 -11.11801 -10.72403 -10.60115 -9.84884 -8.72492 -7.84060 -5.32843 0.09755 0.80605 1.46526 1.46569 1.55812 1.67942 2.00240 2.33479 2.50321 2.84570 3.31398 3.43059 3.71004 3.86585 3.96142 4.04149 4.09922 4.20327 4.24132 4.32741 4.55915 4.59789 4.71349 4.75996 4.93008 4.96610 5.01318 5.02031 5.08489 5.26926 5.34190 5.43847 5.55576 5.61326 5.70062 6.10522 6.35412 6.76530 7.15602 7.19109 7.85159 8.30615 9.20326 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.015368 B = 0.006860 C = 0.005175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.549726 B = 4080.681262 C = 5409.493895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.603 5.603 3 C -0.266 4.266 4 H 0.063 0.937 5 C -0.045 4.045 6 N -0.933 5.933 7 Si 0.967 3.033 8 H -0.284 1.284 9 H -0.293 1.293 10 H -0.272 1.272 11 C 0.170 3.830 12 H 0.043 0.957 13 C -0.126 4.126 14 C -0.118 4.118 15 C 0.107 3.893 16 N -0.591 5.591 17 C 0.592 3.408 18 O -0.558 6.558 19 C -0.060 4.060 20 C -0.197 4.197 21 C -0.030 4.030 22 O 0.111 5.889 23 N -0.348 5.348 24 C 0.072 3.928 25 H -0.007 1.007 26 H 0.031 0.969 27 H 0.026 0.974 28 H 0.249 0.751 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.108 0.892 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.200 0.800 36 H 0.279 0.721 37 H 0.116 0.884 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.577 -11.547 4.375 13.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.325 5.325 3 C -0.396 4.396 4 H 0.081 0.919 5 C -0.240 4.240 6 N -0.579 5.579 7 Si 0.795 3.205 8 H -0.211 1.211 9 H -0.219 1.219 10 H -0.197 1.197 11 C 0.062 3.938 12 H 0.061 0.939 13 C -0.165 4.165 14 C -0.156 4.156 15 C -0.014 4.014 16 N -0.323 5.323 17 C 0.379 3.621 18 O -0.436 6.436 19 C -0.217 4.217 20 C -0.219 4.219 21 C -0.110 4.110 22 O 0.038 5.962 23 N -0.051 5.051 24 C -0.052 4.052 25 H 0.011 0.989 26 H 0.050 0.950 27 H 0.044 0.956 28 H 0.059 0.941 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.126 0.874 33 H 0.101 0.899 34 H 0.113 0.887 35 H 0.217 0.783 36 H 0.295 0.705 37 H 0.133 0.867 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.823 -11.257 3.695 13.201 hybrid contribution 0.495 0.627 0.278 0.846 sum 6.317 -10.629 3.973 12.988 Atomic orbital electron populations 1.20504 0.82691 0.97119 0.96348 1.44038 1.01973 1.00721 1.85779 1.19461 0.99613 0.87071 1.33460 0.91879 1.25780 0.98538 1.01822 0.97888 1.70208 1.20147 1.28049 1.39482 0.85278 0.78347 0.79984 0.76871 1.21104 1.21901 1.19693 1.20698 0.94771 0.85481 0.92847 0.93888 1.21960 1.00417 0.95998 0.98138 1.21847 1.00074 0.95651 0.98068 1.21883 1.02670 0.94115 0.82687 1.48281 1.47057 1.19006 1.17919 1.17251 0.78372 0.85232 0.81259 1.90703 1.54410 1.19059 1.79467 1.23826 1.03229 0.93840 1.00827 1.23044 1.02557 1.03281 0.93058 1.27069 0.93990 0.88206 1.01743 1.84860 1.44679 1.41237 1.25419 1.74187 1.18985 1.11026 1.00908 1.23212 0.96905 0.81575 1.03531 0.98857 0.94993 0.95565 0.94149 0.92145 0.91793 0.92304 0.87410 0.89873 0.88650 0.78266 0.70513 0.86668 0.92662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.85 7.97 127.77 1.02 9.87 16 2 N -0.60 -30.45 2.81 -702.32 -1.97 -32.42 16 3 C -0.27 -14.79 9.57 84.03 0.80 -13.99 16 4 H 0.06 3.47 7.83 -2.91 -0.02 3.45 16 5 C -0.04 -2.51 5.10 84.86 0.43 -2.07 16 6 N -0.93 -55.12 10.73 21.65 0.23 -54.89 16 7 Si 0.97 45.27 29.56 68.60 2.03 47.30 16 8 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 9 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 10 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 11 C 0.17 7.14 2.75 45.07 0.12 7.27 16 12 H 0.04 1.94 7.88 -2.38 -0.02 1.92 16 13 C -0.13 -4.21 5.11 30.62 0.16 -4.05 16 14 C -0.12 -3.09 6.08 30.67 0.19 -2.91 16 15 C 0.11 3.00 6.41 86.36 0.55 3.55 16 16 N -0.59 -20.52 2.98 -821.06 -2.45 -22.98 16 17 C 0.59 21.18 7.72 86.93 0.67 21.85 16 18 O -0.56 -20.84 16.39 -3.70 -0.06 -20.90 16 19 C -0.06 -1.99 6.96 42.96 0.30 -1.69 16 20 C -0.20 -4.51 11.00 22.60 0.25 -4.27 16 21 C -0.03 -0.53 12.28 67.14 0.82 0.29 16 22 O 0.11 3.22 11.18 71.89 0.80 4.02 16 23 N -0.35 -12.57 8.51 -49.50 -0.42 -12.99 16 24 C 0.07 2.89 5.70 86.31 0.49 3.39 16 25 H -0.01 -0.37 7.82 -2.39 -0.02 -0.39 16 26 H 0.03 1.72 6.77 -2.39 -0.02 1.71 16 27 H 0.03 1.11 6.47 -2.39 -0.02 1.10 16 28 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 29 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.06 2.09 6.74 -2.39 -0.02 2.07 16 31 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 32 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 34 H 0.10 2.57 7.03 -2.39 -0.02 2.55 16 35 H 0.20 3.52 8.06 -2.91 -0.02 3.50 16 36 H 0.28 1.22 8.06 -2.91 -0.02 1.20 16 37 H 0.12 5.11 3.78 -43.95 -0.17 4.95 16 38 H 0.06 2.27 7.51 -2.39 -0.02 2.26 16 Total: -1.00 -71.74 308.95 4.88 -66.85 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: 0.92 Total: 8.76 kcal Atomic # 6 Polarization: 11.43 SS G_CDS: 5.81 Total: 17.24 kcal Atomic # 7 Polarization: -118.67 SS G_CDS: -4.61 Total: -123.28 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: 0.74 Total: -16.88 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -71.74 4.88 -66.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027317591.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.243 kcal (2) G-P(sol) polarization free energy of solvation -71.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds