Wall clock time and date at job start Tue Mar 31 2020 01:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34777 * 120.00345 * 2 1 4 4 O 1.21283 * 120.00463 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.99675 * 359.72090 * 3 2 1 6 6 C 1.50703 * 109.47148 * 180.28037 * 5 3 2 7 7 C 1.41378 * 128.00416 * 269.67679 * 6 5 3 8 8 N 1.30177 * 106.39681 * 179.89540 * 7 6 5 9 9 O 1.20918 * 111.60111 * 0.38876 * 8 7 6 10 10 C 1.34042 * 111.57195 * 359.74688 * 9 8 7 11 11 C 1.46497 * 120.00129 * 179.97438 * 2 1 3 12 12 H 1.08996 * 110.64621 * 178.31865 * 11 2 1 13 13 C 1.55155 * 110.72079 * 54.97542 * 11 2 1 14 14 C 1.54909 * 101.58554 * 277.14221 * 13 11 2 15 15 N 1.47424 * 104.82843 * 322.98896 * 14 13 11 16 16 C 1.36941 * 125.64630 * 204.16193 * 15 14 13 17 17 H 1.08003 * 120.00014 * 179.97438 * 16 15 14 18 18 C 1.38807 * 119.99958 * 359.95985 * 16 15 14 19 19 N 1.31618 * 120.00304 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99950 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47220 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.47298 * 120.00128 * 20 18 16 23 23 H 1.48503 * 109.47410 * 239.99917 * 20 18 16 24 24 C 1.47022 * 108.70685 * 24.12881 * 15 14 13 25 25 H 1.08997 * 109.47115 * 90.00316 * 1 2 3 26 26 H 1.08995 * 109.47364 * 210.00706 * 1 2 3 27 27 H 1.09002 * 109.47090 * 330.00257 * 1 2 3 28 28 H 1.09009 * 109.47352 * 300.27556 * 5 3 2 29 29 H 1.08998 * 109.47585 * 60.27844 * 5 3 2 30 30 H 1.08006 * 126.80560 * 0.03665 * 7 6 5 31 31 H 1.07999 * 126.78248 * 179.97438 * 10 9 8 32 32 H 1.08997 * 111.00199 * 35.21823 * 13 11 2 33 33 H 1.09004 * 111.00790 * 159.06303 * 13 11 2 34 34 H 1.08995 * 110.36859 * 204.15195 * 14 13 11 35 35 H 1.09000 * 110.45737 * 81.86989 * 14 13 11 36 36 H 0.97003 * 120.00473 * 180.02562 * 19 18 16 37 37 H 1.09002 * 109.88246 * 239.52432 * 24 15 14 38 38 H 1.08998 * 109.88178 * 118.35717 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 -0.0064 6 6 2.3648 3.6177 -0.0120 7 6 2.9257 4.2889 1.0988 8 7 3.7160 5.2032 0.6149 9 8 3.7163 5.1968 -0.5942 10 6 2.9068 4.2464 -1.0823 11 6 2.1975 -1.2687 0.0006 12 1 3.2726 -1.0917 -0.0294 13 6 1.7507 -2.1611 -1.1874 14 6 0.4718 -2.8225 -0.6159 15 7 0.7744 -3.0617 0.8070 16 6 0.1819 -4.0072 1.6009 17 1 0.4750 -4.1039 2.6359 18 6 -0.7955 -4.8410 1.0756 19 7 -1.1526 -4.7233 -0.1857 20 14 -1.6032 -6.1312 2.1584 21 1 -1.0287 -6.0598 3.5259 22 1 -3.0653 -5.8790 2.2224 23 1 -1.3583 -7.4802 1.5878 24 6 1.8181 -2.1176 1.2323 25 1 -0.3633 -0.0001 -1.0276 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 0.7588 2.5257 -0.8967 29 1 0.7587 2.5344 0.8833 30 1 2.7377 4.0823 2.1421 31 1 2.7228 4.0257 -2.1234 32 1 1.5194 -1.5568 -2.0646 33 1 2.5076 -2.9102 -1.4197 34 1 0.2724 -3.7654 -1.1250 35 1 -0.3811 -2.1511 -0.7147 36 1 -1.8360 -5.3058 -0.5528 37 1 2.6908 -2.6654 1.5880 38 1 1.4348 -1.4729 2.0231 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033356942.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:16 Heat of formation + Delta-G solvation = 69.491689 kcal Electronic energy + Delta-G solvation = -21936.520536 eV Core-core repulsion = 18591.063759 eV Total energy + Delta-G solvation = -3345.456778 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -45.01530 -39.97158 -37.57055 -34.67447 -34.46454 -32.40176 -31.99302 -29.61534 -28.74207 -27.87575 -26.09788 -24.37264 -23.11357 -22.21685 -20.48312 -20.19371 -18.66760 -17.94937 -17.67688 -17.05835 -16.94674 -15.84144 -15.53045 -15.06094 -14.71567 -13.92460 -13.83686 -13.75763 -13.20904 -12.90317 -12.70709 -12.32488 -12.27527 -11.97026 -11.82337 -11.62425 -11.35644 -11.10338 -10.95399 -10.85522 -10.46299 -10.34073 -10.14735 -9.92324 -9.76513 -9.61153 -9.30935 -8.72060 -8.32181 -6.91524 -5.72935 -3.14999 1.40260 2.12762 2.73720 3.10702 3.30902 3.35002 3.41370 3.43155 4.17241 4.43072 4.57083 4.62111 4.76168 4.99852 5.22306 5.36521 5.38587 5.41753 5.45745 5.54016 5.55146 5.67149 5.78712 5.86519 5.90771 6.16133 6.25863 6.31688 6.51218 6.53992 6.66356 6.97366 7.39473 7.56364 7.65046 7.78127 8.14008 8.28009 8.33176 9.14564 9.74958 10.39001 11.30581 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.044852 B = 0.003525 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.119256 B = 7940.764603 C = 8034.977453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.593 5.593 3 C 0.511 3.489 4 O -0.545 6.545 5 C -0.063 4.063 6 C -0.180 4.180 7 C 0.004 3.996 8 N -0.369 5.369 9 O 0.095 5.905 10 C -0.047 4.047 11 C 0.125 3.875 12 H 0.099 0.901 13 C -0.154 4.154 14 C 0.144 3.856 15 N -0.603 5.603 16 C -0.223 4.223 17 H 0.078 0.922 18 C -0.010 4.010 19 N -0.921 5.921 20 Si 0.914 3.086 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.290 1.290 24 C 0.127 3.873 25 H 0.056 0.944 26 H 0.103 0.897 27 H 0.060 0.940 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.188 0.812 31 H 0.215 0.785 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.106 0.894 35 H 0.022 0.978 36 H 0.252 0.748 37 H 0.032 0.968 38 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.311 14.925 -3.059 15.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.325 5.325 3 C 0.298 3.702 4 O -0.423 6.423 5 C -0.104 4.104 6 C -0.185 4.185 7 C -0.175 4.175 8 N -0.073 5.073 9 O 0.030 5.970 10 C -0.129 4.129 11 C 0.022 3.978 12 H 0.117 0.883 13 C -0.193 4.193 14 C 0.020 3.980 15 N -0.330 5.330 16 C -0.351 4.351 17 H 0.095 0.905 18 C -0.205 4.205 19 N -0.570 5.570 20 Si 0.744 3.256 21 H -0.206 1.206 22 H -0.218 1.218 23 H -0.217 1.217 24 C 0.000 4.000 25 H 0.074 0.926 26 H 0.122 0.878 27 H 0.079 0.921 28 H 0.125 0.875 29 H 0.126 0.874 30 H 0.205 0.795 31 H 0.231 0.769 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.123 0.877 35 H 0.040 0.960 36 H 0.062 0.938 37 H 0.050 0.950 38 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 3.590 15.683 -2.508 16.283 hybrid contribution -1.191 -1.466 0.456 1.943 sum 2.399 14.217 -2.053 14.563 Atomic orbital electron populations 1.22141 0.79049 1.04331 1.02086 1.47813 1.07362 1.05479 1.71825 1.20419 0.88001 0.85058 0.76686 1.90690 1.13892 1.87328 1.50349 1.19948 0.96105 0.88678 1.05635 1.20796 1.04220 1.00976 0.92460 1.24916 0.96343 0.94251 1.01966 1.73841 1.20077 1.21982 0.91382 1.84789 1.51025 1.45271 1.15866 1.25744 0.94321 0.91647 1.01186 1.22151 0.96440 0.82122 0.97116 0.88304 1.23343 1.01566 0.98240 0.96198 1.22126 0.90501 1.00727 0.84674 1.44560 1.42741 1.37672 1.08014 1.19123 1.14782 1.08336 0.92856 0.90458 1.24769 0.99383 0.99844 0.96515 1.69801 1.34024 1.41085 1.12104 0.86011 0.78942 0.81292 0.79311 1.20554 1.21755 1.21738 1.21639 0.92770 0.91440 0.94136 0.92581 0.87821 0.92102 0.87491 0.87405 0.79504 0.76873 0.92071 0.91060 0.87680 0.96013 0.93762 0.94981 0.95559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.91 8.33 59.84 0.50 1.41 16 2 N -0.59 -9.04 2.82 -171.84 -0.49 -9.53 16 3 C 0.51 7.41 7.67 -10.98 -0.08 7.32 16 4 O -0.54 -9.90 15.40 5.55 0.09 -9.82 16 5 C -0.06 -0.63 4.84 -29.03 -0.14 -0.77 16 6 C -0.18 -1.98 4.82 -104.42 -0.50 -2.48 16 7 C 0.00 0.05 12.16 -17.06 -0.21 -0.16 16 8 N -0.37 -4.87 12.07 30.35 0.37 -4.50 16 9 O 0.09 1.12 11.20 17.17 0.19 1.31 16 10 C -0.05 -0.46 12.26 29.74 0.36 -0.10 16 11 C 0.13 2.22 3.58 -66.10 -0.24 1.99 16 12 H 0.10 1.80 6.99 -51.93 -0.36 1.44 16 13 C -0.15 -2.81 6.53 -24.58 -0.16 -2.97 16 14 C 0.14 3.21 5.00 -2.53 -0.01 3.20 16 15 N -0.60 -14.48 2.97 -170.07 -0.50 -14.99 16 16 C -0.22 -5.92 10.27 -15.06 -0.15 -6.08 16 17 H 0.08 2.02 7.83 -52.48 -0.41 1.61 16 18 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 19 N -0.92 -25.48 10.09 55.49 0.56 -24.92 16 20 Si 0.91 21.31 29.55 -169.99 -5.02 16.28 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 C 0.13 2.59 6.24 -3.06 -0.02 2.57 16 25 H 0.06 0.71 7.99 -51.93 -0.41 0.29 16 26 H 0.10 1.82 5.19 -51.93 -0.27 1.55 16 27 H 0.06 0.63 6.45 -51.93 -0.33 0.29 16 28 H 0.11 0.80 8.11 -51.92 -0.42 0.38 16 29 H 0.11 0.89 7.41 -51.93 -0.38 0.50 16 30 H 0.19 1.79 8.06 -52.48 -0.42 1.37 16 31 H 0.21 1.25 8.06 -52.49 -0.42 0.83 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.11 2.72 5.87 -51.93 -0.30 2.41 16 35 H 0.02 0.49 5.54 -51.93 -0.29 0.20 16 36 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 37 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.03 0.54 8.04 -51.93 -0.42 0.13 16 LS Contribution 310.90 15.07 4.69 4.69 Total: -1.00 -31.87 310.90 -5.73 -37.60 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -4.86 Total: 0.30 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: -0.75 Total: 3.58 kcal Atomic # 7 Polarization: -53.88 SS G_CDS: -0.06 Total: -53.94 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: 0.28 Total: -8.50 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.87 -5.73 -37.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033356942.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.092 kcal (2) G-P(sol) polarization free energy of solvation -31.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds