Wall clock time and date at job start Tue Mar 31 2020 01:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34777 * 120.00345 * 2 1 4 4 O 1.21283 * 120.00463 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.99675 * 359.72090 * 3 2 1 6 6 C 1.50703 * 109.47148 * 180.28037 * 5 3 2 7 7 C 1.41378 * 128.00416 * 269.67679 * 6 5 3 8 8 N 1.30177 * 106.39681 * 179.89540 * 7 6 5 9 9 O 1.20918 * 111.60111 * 0.38876 * 8 7 6 10 10 C 1.34042 * 111.57195 * 359.74688 * 9 8 7 11 11 C 1.46497 * 120.00129 * 179.97438 * 2 1 3 12 12 H 1.08996 * 110.64621 * 178.31865 * 11 2 1 13 13 C 1.55155 * 110.72079 * 54.97542 * 11 2 1 14 14 C 1.54909 * 101.58554 * 277.14221 * 13 11 2 15 15 N 1.47424 * 104.82843 * 322.98896 * 14 13 11 16 16 C 1.36941 * 125.64630 * 204.16193 * 15 14 13 17 17 H 1.08003 * 120.00014 * 179.97438 * 16 15 14 18 18 C 1.38807 * 119.99958 * 359.95985 * 16 15 14 19 19 N 1.31618 * 120.00304 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99950 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47220 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.47298 * 120.00128 * 20 18 16 23 23 H 1.48503 * 109.47410 * 239.99917 * 20 18 16 24 24 C 1.47022 * 108.70685 * 24.12881 * 15 14 13 25 25 H 1.08997 * 109.47115 * 90.00316 * 1 2 3 26 26 H 1.08995 * 109.47364 * 210.00706 * 1 2 3 27 27 H 1.09002 * 109.47090 * 330.00257 * 1 2 3 28 28 H 1.09009 * 109.47352 * 300.27556 * 5 3 2 29 29 H 1.08998 * 109.47585 * 60.27844 * 5 3 2 30 30 H 1.08006 * 126.80560 * 0.03665 * 7 6 5 31 31 H 1.07999 * 126.78248 * 179.97438 * 10 9 8 32 32 H 1.08997 * 111.00199 * 35.21823 * 13 11 2 33 33 H 1.09004 * 111.00790 * 159.06303 * 13 11 2 34 34 H 1.08995 * 110.36859 * 204.15195 * 14 13 11 35 35 H 1.09000 * 110.45737 * 81.86989 * 14 13 11 36 36 H 0.97003 * 120.00473 * 180.02562 * 19 18 16 37 37 H 1.09002 * 109.88246 * 239.52432 * 24 15 14 38 38 H 1.08998 * 109.88178 * 118.35717 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 -0.0064 6 6 2.3648 3.6177 -0.0120 7 6 2.9257 4.2889 1.0988 8 7 3.7160 5.2032 0.6149 9 8 3.7163 5.1968 -0.5942 10 6 2.9068 4.2464 -1.0823 11 6 2.1975 -1.2687 0.0006 12 1 3.2726 -1.0917 -0.0294 13 6 1.7507 -2.1611 -1.1874 14 6 0.4718 -2.8225 -0.6159 15 7 0.7744 -3.0617 0.8070 16 6 0.1819 -4.0072 1.6009 17 1 0.4750 -4.1039 2.6359 18 6 -0.7955 -4.8410 1.0756 19 7 -1.1526 -4.7233 -0.1857 20 14 -1.6032 -6.1312 2.1584 21 1 -1.0287 -6.0598 3.5259 22 1 -3.0653 -5.8790 2.2224 23 1 -1.3583 -7.4802 1.5878 24 6 1.8181 -2.1176 1.2323 25 1 -0.3633 -0.0001 -1.0276 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 0.7588 2.5257 -0.8967 29 1 0.7587 2.5344 0.8833 30 1 2.7377 4.0823 2.1421 31 1 2.7228 4.0257 -2.1234 32 1 1.5194 -1.5568 -2.0646 33 1 2.5076 -2.9102 -1.4197 34 1 0.2724 -3.7654 -1.1250 35 1 -0.3811 -2.1511 -0.7147 36 1 -1.8360 -5.3058 -0.5528 37 1 2.6908 -2.6654 1.5880 38 1 1.4348 -1.4729 2.0231 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033356942.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:16 Heat of formation + Delta-G solvation = 49.257512 kcal Electronic energy + Delta-G solvation = -21937.397956 eV Core-core repulsion = 18591.063759 eV Total energy + Delta-G solvation = -3346.334198 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -45.85816 -41.21997 -39.05611 -35.94478 -35.54178 -33.99076 -33.03522 -31.21541 -30.01458 -29.15816 -27.50602 -26.12073 -24.00381 -23.20433 -22.02761 -21.62723 -19.89662 -18.94287 -18.74994 -18.59932 -18.12671 -17.12096 -16.70673 -16.61753 -15.94346 -15.61732 -15.21663 -14.77413 -14.17833 -14.11126 -14.03306 -13.74059 -13.54111 -13.28692 -13.25365 -13.00224 -12.87624 -12.80210 -12.36867 -12.13270 -11.98340 -11.93737 -11.78181 -11.40849 -11.31359 -10.86359 -10.67567 -10.25824 -9.60319 -8.85305 -7.75121 -5.18746 0.62646 1.27046 1.48772 1.50226 1.59471 1.64603 2.11448 2.45413 2.51155 3.35316 3.38885 3.62054 3.76779 3.81576 3.92637 3.97099 4.09157 4.22482 4.32358 4.39944 4.61939 4.65879 4.71402 4.73145 4.80039 4.84974 4.92112 4.98650 5.06900 5.12565 5.20606 5.48372 5.59613 5.70766 5.85981 6.34488 6.50908 7.14105 7.19963 7.33541 7.79699 8.43101 9.25858 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.044852 B = 0.003525 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.119256 B = 7940.764603 C = 8034.977453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.595 5.595 3 C 0.511 3.489 4 O -0.585 6.585 5 C -0.052 4.052 6 C -0.198 4.198 7 C -0.006 4.006 8 N -0.401 5.401 9 O 0.083 5.917 10 C -0.035 4.035 11 C 0.138 3.862 12 H 0.097 0.903 13 C -0.139 4.139 14 C 0.151 3.849 15 N -0.619 5.619 16 C -0.237 4.237 17 H 0.075 0.925 18 C -0.058 4.058 19 N -0.942 5.942 20 Si 0.975 3.025 21 H -0.272 1.272 22 H -0.290 1.290 23 H -0.294 1.294 24 C 0.128 3.872 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.100 0.900 28 H 0.142 0.858 29 H 0.131 0.869 30 H 0.201 0.799 31 H 0.252 0.748 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.022 0.978 36 H 0.247 0.753 37 H 0.025 0.975 38 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.625 16.198 -3.465 16.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.326 5.326 3 C 0.301 3.699 4 O -0.465 6.465 5 C -0.091 4.091 6 C -0.203 4.203 7 C -0.185 4.185 8 N -0.108 5.108 9 O 0.022 5.978 10 C -0.117 4.117 11 C 0.033 3.967 12 H 0.115 0.885 13 C -0.178 4.178 14 C 0.026 3.974 15 N -0.346 5.346 16 C -0.366 4.366 17 H 0.093 0.907 18 C -0.251 4.251 19 N -0.592 5.592 20 Si 0.804 3.196 21 H -0.197 1.197 22 H -0.217 1.217 23 H -0.221 1.221 24 C 0.002 3.998 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.119 0.881 28 H 0.160 0.840 29 H 0.149 0.851 30 H 0.218 0.782 31 H 0.268 0.732 32 H 0.102 0.898 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.039 0.961 36 H 0.057 0.943 37 H 0.043 0.957 38 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 2.905 16.986 -2.916 17.478 hybrid contribution -0.950 -1.848 0.587 2.159 sum 1.955 15.139 -2.329 15.441 Atomic orbital electron populations 1.22152 0.77837 1.04249 1.03001 1.47841 1.07962 1.04836 1.71998 1.21194 0.87685 0.85938 0.75050 1.90681 1.15919 1.87892 1.52035 1.19995 0.95638 0.85096 1.08384 1.20997 1.05177 1.01697 0.92403 1.25327 0.95960 0.94020 1.03157 1.73837 1.21458 1.23346 0.92117 1.84754 1.51560 1.46019 1.15517 1.26506 0.92440 0.90061 1.02678 1.21813 0.96595 0.83089 0.95178 0.88542 1.23180 0.99323 0.98267 0.97030 1.21920 0.92461 0.99180 0.83809 1.44748 1.43266 1.37883 1.08675 1.19394 1.14987 1.09009 0.93227 0.90724 1.25483 1.00191 1.01716 0.97744 1.70028 1.34270 1.41654 1.13248 0.85067 0.77808 0.78607 0.78145 1.19671 1.21707 1.22136 1.21693 0.91492 0.91167 0.95478 0.91156 0.91904 0.88133 0.84016 0.85145 0.78217 0.73180 0.89760 0.91349 0.91423 0.96070 0.94298 0.95681 0.95654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.71 8.33 127.77 1.06 2.77 16 2 N -0.59 -16.69 2.82 -815.98 -2.30 -19.00 16 3 C 0.51 13.33 7.67 87.66 0.67 14.00 16 4 O -0.58 -20.19 15.40 -3.04 -0.05 -20.24 16 5 C -0.05 -0.81 4.84 29.10 0.14 -0.67 16 6 C -0.20 -3.77 4.82 -19.73 -0.10 -3.86 16 7 C -0.01 -0.14 12.16 85.71 1.04 0.91 16 8 N -0.40 -10.22 12.07 -59.27 -0.72 -10.94 16 9 O 0.08 1.85 11.20 71.62 0.80 2.65 16 10 C -0.04 -0.59 12.26 67.18 0.82 0.24 16 11 C 0.14 4.74 3.58 46.18 0.17 4.91 16 12 H 0.10 3.42 6.99 -2.39 -0.02 3.41 16 13 C -0.14 -4.92 6.53 31.99 0.21 -4.71 16 14 C 0.15 6.75 5.00 86.86 0.43 7.18 16 15 N -0.62 -30.02 2.97 -691.98 -2.05 -32.07 16 16 C -0.24 -12.75 10.27 84.03 0.86 -11.89 16 17 H 0.07 3.94 7.83 -2.91 -0.02 3.91 16 18 C -0.06 -3.15 5.49 84.86 0.47 -2.68 16 19 N -0.94 -52.92 10.09 21.65 0.22 -52.71 16 20 Si 0.97 44.05 29.55 68.60 2.03 46.08 16 21 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 22 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 23 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 24 C 0.13 5.22 6.24 86.73 0.54 5.76 16 25 H 0.07 1.53 7.99 -2.39 -0.02 1.51 16 26 H 0.06 2.13 5.19 -2.39 -0.01 2.12 16 27 H 0.10 1.64 6.45 -2.39 -0.02 1.62 16 28 H 0.14 1.30 8.11 -2.38 -0.02 1.28 16 29 H 0.13 1.51 7.41 -2.39 -0.02 1.49 16 30 H 0.20 3.54 8.06 -2.91 -0.02 3.51 16 31 H 0.25 1.87 8.06 -2.91 -0.02 1.84 16 32 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 33 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.07 3.58 5.87 -2.39 -0.01 3.56 16 35 H 0.02 0.96 5.54 -2.39 -0.01 0.94 16 36 H 0.25 13.52 8.31 -92.71 -0.77 12.75 16 37 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.03 1.04 8.04 -2.39 -0.02 1.02 16 Total: -1.00 -70.64 310.90 5.33 -65.31 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: 1.08 Total: 8.95 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: 6.33 Total: 11.95 kcal Atomic # 7 Polarization: -109.85 SS G_CDS: -4.86 Total: -114.71 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: 0.76 Total: -17.59 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -70.64 5.33 -65.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033356942.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.566 kcal (2) G-P(sol) polarization free energy of solvation -70.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds