Wall clock time and date at job start Tue Mar 31 2020 00:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.47185 * 2 1 4 4 C 1.34780 * 119.99987 * 273.46804 * 3 2 1 5 5 O 1.21485 * 119.99852 * 184.89258 * 4 3 2 6 6 C 1.48333 * 119.99500 * 4.88477 * 4 3 2 7 7 C 1.42276 * 126.93175 * 185.66803 * 6 4 3 8 8 C 1.35313 * 103.91937 * 180.02562 * 7 6 4 9 9 O 1.34022 * 106.67038 * 0.02562 * 8 7 6 10 10 N 1.20904 * 111.84160 * 359.70851 * 9 8 7 11 11 C 1.46497 * 119.99838 * 93.46761 * 3 2 1 12 12 H 1.08996 * 110.89201 * 3.88071 * 11 3 2 13 13 C 1.55159 * 111.00307 * 239.99724 * 11 3 2 14 14 C 1.54324 * 102.94291 * 206.38711 * 13 11 3 15 15 N 1.47015 * 107.27128 * 22.19729 * 14 13 11 16 16 C 1.36942 * 125.64765 * 181.02242 * 15 14 13 17 17 H 1.08000 * 119.99441 * 185.15933 * 16 15 14 18 18 C 1.38807 * 120.00048 * 4.88571 * 16 15 14 19 19 N 1.31623 * 119.99853 * 353.26059 * 18 16 15 20 20 Si 1.86801 * 120.00154 * 173.25926 * 18 16 15 21 21 H 1.48497 * 109.46843 * 94.98335 * 20 18 16 22 22 H 1.48491 * 109.47171 * 214.98511 * 20 18 16 23 23 H 1.48504 * 109.46944 * 334.98520 * 20 18 16 24 24 C 1.47430 * 108.70564 * 1.28361 * 15 14 13 25 25 H 1.09005 * 109.46970 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47178 * 299.99880 * 1 2 3 27 27 H 1.08991 * 109.47256 * 60.00203 * 1 2 3 28 28 H 1.08998 * 109.46840 * 239.99430 * 2 1 3 29 29 H 1.09000 * 109.46994 * 119.99835 * 2 1 3 30 30 H 1.07997 * 128.04180 * 0.03179 * 7 6 4 31 31 H 1.08000 * 126.66655 * 180.02562 * 8 7 6 32 32 H 1.09008 * 110.71982 * 88.02312 * 13 11 3 33 33 H 1.09000 * 110.72051 * 324.75419 * 13 11 3 34 34 H 1.08997 * 109.88317 * 262.77575 * 14 13 11 35 35 H 1.09002 * 109.87770 * 141.60994 * 14 13 11 36 36 H 0.96995 * 119.99713 * 180.02562 * 19 18 16 37 37 H 1.08994 * 110.36244 * 94.48163 * 24 15 14 38 38 H 1.09000 * 110.36764 * 216.81221 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1764 2.0401 -1.1651 5 8 2.6646 3.1525 -1.1724 6 6 1.7544 1.4068 -2.4383 7 6 1.9526 1.9146 -3.7525 8 6 1.3925 0.9772 -4.5516 9 8 0.9168 0.0186 -3.7447 10 7 1.1279 0.2653 -2.5801 11 6 2.3348 2.0461 1.2664 12 1 2.2194 1.3599 2.1053 13 6 1.4630 3.3147 1.4615 14 6 2.3364 4.1967 2.3784 15 7 3.7271 3.7470 2.2209 16 6 4.8118 4.2617 2.8796 17 1 5.8058 3.9187 2.6332 18 6 4.6341 5.2283 3.8598 19 7 3.4416 5.7463 4.0648 20 14 6.0874 5.7939 4.8882 21 1 6.6729 7.0186 4.2862 22 1 5.6306 6.0910 6.2695 23 1 7.1141 4.7216 4.9262 24 6 3.7616 2.6543 1.2317 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.4375 2.8343 -4.0445 31 1 1.3390 0.9975 -5.6301 32 1 0.5214 3.0641 1.9504 33 1 1.2833 3.8097 0.5072 34 1 2.0233 4.0772 3.4156 35 1 2.2487 5.2416 2.0806 36 1 3.3175 6.4220 4.7495 37 1 3.9849 3.0475 0.2400 38 1 4.4997 1.9056 1.5191 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033757754.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:36 Heat of formation + Delta-G solvation = 82.011204 kcal Electronic energy + Delta-G solvation = -22460.369323 eV Core-core repulsion = 19115.455432 eV Total energy + Delta-G solvation = -3344.913891 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -45.21679 -40.04269 -36.83919 -35.64449 -34.00255 -32.38963 -31.77842 -30.27519 -28.98102 -27.29144 -25.06269 -24.10735 -23.24356 -22.84622 -21.11784 -20.00089 -19.31589 -17.94228 -17.73871 -16.91829 -16.75921 -15.72490 -14.84046 -14.67048 -14.52974 -14.12140 -13.83082 -13.73293 -13.44807 -13.16550 -12.75498 -12.22112 -12.03792 -11.87974 -11.70001 -11.63610 -11.17471 -10.90008 -10.83200 -10.70224 -10.46702 -10.31033 -10.04610 -9.94352 -9.83486 -9.62116 -9.29942 -8.51773 -8.35692 -6.67979 -5.62750 -2.93919 1.04687 1.59339 2.83037 3.06353 3.25042 3.46012 3.50856 3.53236 3.84840 4.40294 4.59409 4.85952 4.95179 5.08993 5.21607 5.24212 5.43492 5.50690 5.53465 5.63442 5.70567 5.74465 5.85119 5.87900 5.94215 6.23233 6.26848 6.50981 6.61330 6.67519 6.75323 7.25066 7.52035 7.66219 7.73763 7.85351 7.91468 8.26506 8.36081 9.31363 9.92100 10.59590 11.49509 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.034694 B = 0.004286 C = 0.004069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.860843 B = 6530.796335 C = 6879.285337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.103 3.897 3 N -0.588 5.588 4 C 0.587 3.413 5 O -0.498 6.498 6 C -0.021 4.021 7 C -0.184 4.184 8 C -0.064 4.064 9 O 0.111 5.889 10 N -0.327 5.327 11 C 0.130 3.870 12 H 0.096 0.904 13 C -0.151 4.151 14 C 0.184 3.816 15 N -0.602 5.602 16 C -0.223 4.223 17 H 0.077 0.923 18 C -0.009 4.009 19 N -0.922 5.922 20 Si 0.910 3.090 21 H -0.290 1.290 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.120 3.880 25 H 0.064 0.936 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.180 0.820 31 H 0.222 0.778 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.047 0.953 35 H 0.041 0.959 36 H 0.251 0.749 37 H 0.055 0.945 38 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.482 -13.455 -15.717 22.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.020 4.020 3 N -0.321 5.321 4 C 0.372 3.628 5 O -0.371 6.371 6 C -0.180 4.180 7 C -0.206 4.206 8 C -0.145 4.145 9 O 0.037 5.963 10 N -0.030 5.030 11 C 0.027 3.973 12 H 0.114 0.886 13 C -0.191 4.191 14 C 0.059 3.941 15 N -0.329 5.329 16 C -0.351 4.351 17 H 0.095 0.905 18 C -0.205 4.205 19 N -0.570 5.570 20 Si 0.741 3.259 21 H -0.218 1.218 22 H -0.217 1.217 23 H -0.207 1.207 24 C -0.007 4.007 25 H 0.083 0.917 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.104 0.896 29 H 0.098 0.902 30 H 0.198 0.802 31 H 0.238 0.762 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -7.588 -13.584 -14.608 21.343 hybrid contribution 0.970 1.019 0.085 1.409 sum -6.618 -12.566 -14.524 20.313 Atomic orbital electron populations 1.22104 0.95614 1.01973 1.02141 1.21752 0.94994 0.81986 1.03242 1.47875 1.64181 1.14084 1.05918 1.16979 0.79368 0.85118 0.81345 1.90848 1.42223 1.18458 1.85568 1.23829 1.03270 0.93655 0.97222 1.22816 1.04591 1.03010 0.90218 1.25991 0.99992 0.89195 0.99341 1.84806 1.58458 1.41267 1.11724 1.74399 1.15324 1.16086 0.97203 1.22581 0.97989 0.94032 0.82654 0.88637 1.23222 0.98105 0.96320 1.01408 1.21072 0.82205 0.95110 0.95719 1.44328 1.03959 1.37626 1.46946 1.19058 0.85987 1.17526 1.12572 0.90529 1.24796 0.96875 0.99300 0.99549 1.69985 1.20573 1.30885 1.35507 0.86120 0.81503 0.78423 0.79881 1.21754 1.21703 1.20694 1.22072 0.92301 0.90945 0.95353 0.91741 0.92559 0.92405 0.89631 0.90248 0.80244 0.76195 0.92474 0.91374 0.93494 0.94077 0.93874 0.92780 0.94935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 9.69 37.16 0.36 -1.47 16 2 C 0.10 1.30 5.68 -4.04 -0.02 1.27 16 3 N -0.59 -9.52 2.57 -164.46 -0.42 -9.94 16 4 C 0.59 10.12 6.95 -12.10 -0.08 10.04 16 5 O -0.50 -10.42 13.02 5.38 0.07 -10.35 16 6 C -0.02 -0.28 6.67 -82.53 -0.55 -0.83 16 7 C -0.18 -1.93 11.00 -39.07 -0.43 -2.36 16 8 C -0.06 -0.45 12.28 29.69 0.36 -0.09 16 9 O 0.11 1.03 11.18 17.23 0.19 1.23 16 10 N -0.33 -3.88 7.15 33.29 0.24 -3.64 16 11 C 0.13 2.48 3.57 -65.66 -0.23 2.25 16 12 H 0.10 1.69 7.82 -51.93 -0.41 1.29 16 13 C -0.15 -3.15 6.34 -24.89 -0.16 -3.31 16 14 C 0.18 4.79 5.38 -3.07 -0.02 4.78 16 15 N -0.60 -16.48 3.39 -169.93 -0.58 -17.06 16 16 C -0.22 -6.56 10.27 -15.06 -0.15 -6.71 16 17 H 0.08 2.18 7.84 -52.49 -0.41 1.77 16 18 C -0.01 -0.27 5.48 -17.43 -0.10 -0.37 16 19 N -0.92 -28.11 10.36 55.49 0.57 -27.54 16 20 Si 0.91 22.84 29.56 -169.99 -5.02 17.82 16 21 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 22 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 C 0.12 2.76 6.58 -2.40 -0.02 2.75 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.72 6.56 -51.93 -0.34 0.38 16 28 H 0.09 1.04 5.77 -51.93 -0.30 0.74 16 29 H 0.08 0.89 7.86 -51.93 -0.41 0.49 16 30 H 0.18 1.71 8.06 -52.49 -0.42 1.28 16 31 H 0.22 0.45 8.06 -52.49 -0.42 0.02 16 32 H 0.06 1.06 8.14 -51.92 -0.42 0.64 16 33 H 0.07 1.49 6.42 -51.93 -0.33 1.15 16 34 H 0.05 1.31 7.30 -51.93 -0.38 0.93 16 35 H 0.04 1.20 7.60 -51.93 -0.39 0.80 16 36 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.05 1.34 5.36 -51.93 -0.28 1.06 16 38 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 307.93 15.07 4.64 4.64 Total: -1.00 -34.52 307.93 -6.27 -40.79 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -4.92 Total: -1.89 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: -1.04 Total: 5.95 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: -0.19 Total: -58.18 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.26 Total: -9.13 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -34.52 -6.27 -40.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033757754.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.802 kcal (2) G-P(sol) polarization free energy of solvation -34.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds