Wall clock time and date at job start Tue Mar 31 2020 00:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.47185 * 2 1 4 4 C 1.34780 * 119.99987 * 273.46804 * 3 2 1 5 5 O 1.21485 * 119.99852 * 184.89258 * 4 3 2 6 6 C 1.48333 * 119.99500 * 4.88477 * 4 3 2 7 7 C 1.42276 * 126.93175 * 185.66803 * 6 4 3 8 8 C 1.35313 * 103.91937 * 180.02562 * 7 6 4 9 9 O 1.34022 * 106.67038 * 0.02562 * 8 7 6 10 10 N 1.20904 * 111.84160 * 359.70851 * 9 8 7 11 11 C 1.46497 * 119.99838 * 93.46761 * 3 2 1 12 12 H 1.08996 * 110.89201 * 3.88071 * 11 3 2 13 13 C 1.55159 * 111.00307 * 239.99724 * 11 3 2 14 14 C 1.54324 * 102.94291 * 206.38711 * 13 11 3 15 15 N 1.47015 * 107.27128 * 22.19729 * 14 13 11 16 16 C 1.36942 * 125.64765 * 181.02242 * 15 14 13 17 17 H 1.08000 * 119.99441 * 185.15933 * 16 15 14 18 18 C 1.38807 * 120.00048 * 4.88571 * 16 15 14 19 19 N 1.31623 * 119.99853 * 353.26059 * 18 16 15 20 20 Si 1.86801 * 120.00154 * 173.25926 * 18 16 15 21 21 H 1.48497 * 109.46843 * 94.98335 * 20 18 16 22 22 H 1.48491 * 109.47171 * 214.98511 * 20 18 16 23 23 H 1.48504 * 109.46944 * 334.98520 * 20 18 16 24 24 C 1.47430 * 108.70564 * 1.28361 * 15 14 13 25 25 H 1.09005 * 109.46970 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47178 * 299.99880 * 1 2 3 27 27 H 1.08991 * 109.47256 * 60.00203 * 1 2 3 28 28 H 1.08998 * 109.46840 * 239.99430 * 2 1 3 29 29 H 1.09000 * 109.46994 * 119.99835 * 2 1 3 30 30 H 1.07997 * 128.04180 * 0.03179 * 7 6 4 31 31 H 1.08000 * 126.66655 * 180.02562 * 8 7 6 32 32 H 1.09008 * 110.71982 * 88.02312 * 13 11 3 33 33 H 1.09000 * 110.72051 * 324.75419 * 13 11 3 34 34 H 1.08997 * 109.88317 * 262.77575 * 14 13 11 35 35 H 1.09002 * 109.87770 * 141.60994 * 14 13 11 36 36 H 0.96995 * 119.99713 * 180.02562 * 19 18 16 37 37 H 1.08994 * 110.36244 * 94.48163 * 24 15 14 38 38 H 1.09000 * 110.36764 * 216.81221 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1764 2.0401 -1.1651 5 8 2.6646 3.1525 -1.1724 6 6 1.7544 1.4068 -2.4383 7 6 1.9526 1.9146 -3.7525 8 6 1.3925 0.9772 -4.5516 9 8 0.9168 0.0186 -3.7447 10 7 1.1279 0.2653 -2.5801 11 6 2.3348 2.0461 1.2664 12 1 2.2194 1.3599 2.1053 13 6 1.4630 3.3147 1.4615 14 6 2.3364 4.1967 2.3784 15 7 3.7271 3.7470 2.2209 16 6 4.8118 4.2617 2.8796 17 1 5.8058 3.9187 2.6332 18 6 4.6341 5.2283 3.8598 19 7 3.4416 5.7463 4.0648 20 14 6.0874 5.7939 4.8882 21 1 6.6729 7.0186 4.2862 22 1 5.6306 6.0910 6.2695 23 1 7.1141 4.7216 4.9262 24 6 3.7616 2.6543 1.2317 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 2.4375 2.8343 -4.0445 31 1 1.3390 0.9975 -5.6301 32 1 0.5214 3.0641 1.9504 33 1 1.2833 3.8097 0.5072 34 1 2.0233 4.0772 3.4156 35 1 2.2487 5.2416 2.0806 36 1 3.3175 6.4220 4.7495 37 1 3.9849 3.0475 0.2400 38 1 4.4997 1.9056 1.5191 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033757754.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:36 Heat of formation + Delta-G solvation = 58.892084 kcal Electronic energy + Delta-G solvation = -22461.371843 eV Core-core repulsion = 19115.455432 eV Total energy + Delta-G solvation = -3345.916411 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -46.06300 -41.44219 -38.60035 -37.01615 -35.05590 -34.18586 -32.72577 -31.66614 -30.81931 -29.01032 -26.79405 -25.64320 -24.18919 -23.73390 -22.61422 -22.03558 -20.43565 -18.97972 -18.86858 -18.65493 -17.96512 -17.19157 -16.69632 -16.14074 -16.08466 -15.53265 -15.19811 -14.76294 -14.64404 -14.38049 -14.25577 -14.08668 -13.66184 -13.45562 -13.01413 -12.82572 -12.77348 -12.57843 -12.34715 -12.22064 -12.13272 -12.03620 -11.86093 -11.63825 -11.36652 -10.90033 -10.69659 -10.59021 -9.80497 -8.87559 -7.87308 -5.22588 0.13282 0.82976 1.44067 1.46802 1.56492 1.66449 2.04391 2.35825 2.49420 2.83626 3.30483 3.55425 3.66856 3.84949 3.90369 4.03216 4.06260 4.17550 4.29457 4.37603 4.47650 4.59924 4.64793 4.67733 4.82169 4.89026 4.94802 4.98905 5.01813 5.10882 5.34626 5.40533 5.59281 5.61526 5.69777 6.16095 6.24715 6.89875 7.07055 7.14462 7.73512 8.40098 9.23932 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.034694 B = 0.004286 C = 0.004069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.860843 B = 6530.796335 C = 6879.285337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.101 3.899 3 N -0.586 5.586 4 C 0.582 3.418 5 O -0.549 6.549 6 C -0.054 4.054 7 C -0.211 4.211 8 C -0.021 4.021 9 O 0.127 5.873 10 N -0.330 5.330 11 C 0.150 3.850 12 H 0.118 0.882 13 C -0.135 4.135 14 C 0.195 3.805 15 N -0.622 5.622 16 C -0.247 4.247 17 H 0.080 0.920 18 C -0.065 4.065 19 N -0.951 5.951 20 Si 0.983 3.017 21 H -0.288 1.288 22 H -0.289 1.289 23 H -0.266 1.266 24 C 0.117 3.883 25 H 0.089 0.911 26 H 0.050 0.950 27 H 0.045 0.955 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.181 0.819 31 H 0.278 0.722 32 H 0.085 0.915 33 H 0.054 0.946 34 H 0.024 0.976 35 H -0.004 1.004 36 H 0.248 0.752 37 H 0.037 0.963 38 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.928 -15.922 -17.192 24.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.021 4.021 3 N -0.318 5.318 4 C 0.369 3.631 5 O -0.426 6.426 6 C -0.211 4.211 7 C -0.234 4.234 8 C -0.101 4.101 9 O 0.050 5.950 10 N -0.031 5.031 11 C 0.046 3.954 12 H 0.136 0.864 13 C -0.174 4.174 14 C 0.069 3.931 15 N -0.349 5.349 16 C -0.376 4.376 17 H 0.097 0.903 18 C -0.257 4.257 19 N -0.600 5.600 20 Si 0.811 3.189 21 H -0.216 1.216 22 H -0.215 1.215 23 H -0.191 1.191 24 C -0.009 4.009 25 H 0.108 0.892 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.111 0.889 29 H 0.115 0.885 30 H 0.198 0.802 31 H 0.293 0.707 32 H 0.104 0.896 33 H 0.073 0.927 34 H 0.042 0.958 35 H 0.014 0.986 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -8.042 -16.111 -16.080 24.142 hybrid contribution 1.085 1.744 0.379 2.089 sum -6.957 -14.367 -15.702 22.391 Atomic orbital electron populations 1.22043 0.94468 1.03336 1.01247 1.22012 0.95851 0.79750 1.04459 1.47910 1.63927 1.15339 1.04626 1.17491 0.78299 0.84616 0.82666 1.90814 1.44507 1.20689 1.86543 1.23476 1.05823 0.95200 0.96578 1.23010 1.06409 1.04397 0.89570 1.26855 0.96166 0.86367 1.00757 1.84779 1.57524 1.41474 1.11258 1.74384 1.14951 1.15232 0.98504 1.22229 0.94495 0.93766 0.84927 0.86428 1.22997 0.98530 0.96206 0.99655 1.20792 0.83022 0.93870 0.95410 1.44631 1.03948 1.38853 1.47429 1.19459 0.86896 1.18037 1.13158 0.90263 1.25713 0.99891 0.99434 1.00712 1.70211 1.22728 1.31239 1.35827 0.84999 0.78257 0.78011 0.77663 1.21560 1.21487 1.19089 1.22131 0.95337 0.90107 0.93316 0.89192 0.93126 0.93584 0.88946 0.88489 0.80185 0.70663 0.89636 0.92690 0.95796 0.98576 0.94261 0.94559 0.94276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 9.69 71.98 0.70 -2.41 16 2 C 0.10 2.31 5.68 86.38 0.49 2.80 16 3 N -0.59 -18.64 2.57 -792.55 -2.03 -20.67 16 4 C 0.58 20.34 6.95 86.93 0.60 20.94 16 5 O -0.55 -24.09 13.02 -3.67 -0.05 -24.14 16 6 C -0.05 -1.42 6.67 42.96 0.29 -1.14 16 7 C -0.21 -4.08 11.00 22.60 0.25 -3.83 16 8 C -0.02 -0.21 12.28 67.14 0.82 0.61 16 9 O 0.13 1.91 11.18 71.83 0.80 2.72 16 10 N -0.33 -7.10 7.15 -49.51 -0.35 -7.45 16 11 C 0.15 5.68 3.57 46.46 0.17 5.85 16 12 H 0.12 3.96 7.82 -2.39 -0.02 3.94 16 13 C -0.13 -5.73 6.34 31.78 0.20 -5.53 16 14 C 0.19 10.63 5.38 86.73 0.47 11.09 16 15 N -0.62 -35.32 3.39 -691.55 -2.35 -37.66 16 16 C -0.25 -14.91 10.27 84.03 0.86 -14.05 16 17 H 0.08 4.60 7.84 -2.91 -0.02 4.58 16 18 C -0.06 -3.88 5.48 84.86 0.46 -3.41 16 19 N -0.95 -60.12 10.36 21.65 0.22 -59.90 16 20 Si 0.98 47.76 29.56 68.60 2.03 49.79 16 21 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 22 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 23 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 24 C 0.12 5.53 6.58 86.93 0.57 6.10 16 25 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 26 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.05 1.05 6.56 -2.39 -0.02 1.04 16 28 H 0.09 2.04 5.77 -2.39 -0.01 2.03 16 29 H 0.10 1.89 7.86 -2.39 -0.02 1.88 16 30 H 0.18 3.36 8.06 -2.91 -0.02 3.33 16 31 H 0.28 -0.63 8.06 -2.91 -0.02 -0.65 16 32 H 0.09 3.13 8.14 -2.38 -0.02 3.11 16 33 H 0.05 2.49 6.42 -2.39 -0.02 2.48 16 34 H 0.02 1.39 7.30 -2.39 -0.02 1.38 16 35 H 0.00 -0.25 7.60 -2.39 -0.02 -0.27 16 36 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 37 H 0.04 1.89 5.36 -2.39 -0.01 1.87 16 38 H 0.04 1.76 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -80.08 307.93 5.23 -74.85 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: 1.07 Total: 5.45 kcal Atomic # 6 Polarization: 11.14 SS G_CDS: 5.89 Total: 17.03 kcal Atomic # 7 Polarization: -121.17 SS G_CDS: -4.51 Total: -125.68 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: 0.76 Total: -21.43 kcal Atomic # 14 Polarization: 47.76 SS G_CDS: 2.03 Total: 49.79 kcal Total: -80.08 5.23 -74.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033757754.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.742 kcal (2) G-P(sol) polarization free energy of solvation -80.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds