Wall clock time and date at job start Tue Mar 31 2020 00:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46494 * 109.47173 * 2 1 4 4 C 1.34770 * 120.00521 * 272.95452 * 3 2 1 5 5 O 1.21613 * 120.00231 * 185.02238 * 4 3 2 6 6 C 1.47423 * 120.00051 * 5.02329 * 4 3 2 7 7 C 1.36090 * 126.45146 * 185.69688 * 6 4 3 8 8 O 1.34253 * 106.94711 * 179.84242 * 7 6 4 9 9 C 1.34051 * 108.22925 * 0.42334 * 8 7 6 10 10 N 1.29929 * 109.24137 * 359.73232 * 9 8 7 11 11 C 1.46508 * 119.99580 * 92.95637 * 3 2 1 12 12 H 1.08994 * 110.64560 * 1.68491 * 11 3 2 13 13 C 1.55159 * 110.71909 * 125.02532 * 11 3 2 14 14 C 1.54909 * 101.58267 * 153.86208 * 13 11 3 15 15 N 1.47430 * 104.83060 * 322.99040 * 14 13 11 16 16 C 1.36933 * 125.64476 * 204.16288 * 15 14 13 17 17 H 1.08003 * 119.99733 * 179.97438 * 16 15 14 18 18 C 1.38816 * 120.00466 * 359.95473 * 16 15 14 19 19 N 1.31617 * 119.99529 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00066 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46868 * 90.00564 * 20 18 16 22 22 H 1.48505 * 109.46792 * 210.00031 * 20 18 16 23 23 H 1.48501 * 109.47406 * 330.00437 * 20 18 16 24 24 C 1.47023 * 108.70505 * 24.12861 * 15 14 13 25 25 H 1.08999 * 109.47326 * 179.97438 * 1 2 3 26 26 H 1.09009 * 109.47088 * 299.99851 * 1 2 3 27 27 H 1.09003 * 109.47190 * 59.99787 * 1 2 3 28 28 H 1.08994 * 109.47281 * 120.00464 * 2 1 3 29 29 H 1.09000 * 109.46714 * 240.00580 * 2 1 3 30 30 H 1.07999 * 126.52310 * 359.97438 * 7 6 4 31 31 H 1.08004 * 125.38067 * 179.70147 * 9 8 7 32 32 H 1.08996 * 111.00112 * 271.93726 * 13 11 3 33 33 H 1.08996 * 111.00590 * 35.78824 * 13 11 3 34 34 H 1.08997 * 110.36890 * 204.15339 * 14 13 11 35 35 H 1.09004 * 110.36689 * 81.82598 * 14 13 11 36 36 H 0.97002 * 119.99696 * 179.97438 * 19 18 16 37 37 H 1.08998 * 109.87528 * 239.52531 * 24 15 14 38 38 H 1.08996 * 109.88270 * 118.35678 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1863 2.0366 -1.1655 5 8 2.6772 3.1492 -1.1722 6 6 1.7748 1.4049 -2.4324 7 6 1.9804 1.8959 -3.6849 8 8 1.4537 1.0090 -4.5442 9 6 0.9278 0.0000 -3.8356 10 7 1.1129 0.2240 -2.5692 11 6 2.3242 2.0499 1.2672 12 1 2.1631 1.3741 2.1070 13 6 3.7779 2.5921 1.2648 14 6 3.6741 3.7650 2.2713 15 7 2.3448 4.3544 2.0281 16 6 1.9786 5.6425 2.3142 17 1 0.9759 5.9798 2.0966 18 6 2.8958 6.5147 2.8843 19 7 4.1177 6.1036 3.1493 20 14 2.3963 8.2719 3.2738 21 1 1.8513 8.3372 4.6537 22 1 3.5827 9.1588 3.1677 23 1 1.3579 8.7167 2.3099 24 6 1.4779 3.3305 1.4268 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8901 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 2.4750 2.8216 -3.9392 31 1 0.4285 -0.8627 -4.2516 32 1 4.4778 1.8349 1.6180 33 1 4.0596 2.9507 0.2748 34 1 4.4558 4.5000 2.0795 35 1 3.7433 3.3945 3.2941 36 1 4.7588 6.7132 3.5473 37 1 1.1280 3.6677 0.4511 38 1 0.6279 3.1341 2.0802 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033766022.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:44 Heat of formation + Delta-G solvation = 44.442912 kcal Electronic energy + Delta-G solvation = -22543.073778 eV Core-core repulsion = 19196.530803 eV Total energy + Delta-G solvation = -3346.542974 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.55498 -39.84531 -36.73628 -35.65052 -34.61940 -32.24198 -30.46251 -30.12548 -28.81803 -27.15910 -24.88192 -23.81577 -22.94968 -22.70828 -20.84194 -20.05114 -19.27910 -17.56149 -16.91226 -16.78701 -16.41844 -15.67606 -15.22528 -14.69877 -14.54397 -14.20246 -13.82616 -13.63522 -13.48164 -13.20450 -12.46000 -12.17159 -11.92272 -11.79480 -11.56983 -11.38271 -10.90110 -10.86086 -10.76619 -10.71657 -10.54160 -10.42172 -10.00999 -9.71561 -9.46510 -9.29522 -9.16629 -8.51538 -8.20425 -6.67104 -5.51421 -2.91703 1.06931 1.97589 2.55436 3.17722 3.47299 3.48500 3.52891 3.55594 3.89127 4.60185 4.65180 4.77866 5.18403 5.36545 5.43562 5.46461 5.53604 5.61400 5.64381 5.69965 5.78452 5.87771 5.92589 6.01886 6.14170 6.44119 6.49124 6.65070 6.67853 6.73676 6.86401 7.26062 7.31659 7.62773 7.75050 7.77108 8.00362 8.44858 8.51879 9.35895 9.97040 10.62622 11.52564 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.027123 B = 0.004690 C = 0.004397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.104543 B = 5968.955452 C = 6366.376474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.109 3.891 3 N -0.589 5.589 4 C 0.589 3.411 5 O -0.505 6.505 6 C -0.065 4.065 7 C 0.011 3.989 8 O -0.202 6.202 9 C 0.165 3.835 10 N -0.457 5.457 11 C 0.135 3.865 12 H 0.090 0.910 13 C -0.159 4.159 14 C 0.158 3.842 15 N -0.596 5.596 16 C -0.214 4.214 17 H 0.075 0.925 18 C -0.013 4.013 19 N -0.923 5.923 20 Si 0.913 3.087 21 H -0.290 1.290 22 H -0.291 1.291 23 H -0.282 1.282 24 C 0.135 3.865 25 H 0.058 0.942 26 H 0.048 0.952 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.094 0.906 30 H 0.230 0.770 31 H 0.251 0.749 32 H 0.052 0.948 33 H 0.087 0.913 34 H 0.107 0.893 35 H 0.009 0.991 36 H 0.250 0.750 37 H 0.032 0.968 38 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.289 -16.393 -13.088 21.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.014 4.014 3 N -0.321 5.321 4 C 0.375 3.625 5 O -0.380 6.380 6 C -0.185 4.185 7 C -0.063 4.063 8 O -0.088 6.088 9 C -0.063 4.063 10 N -0.187 5.187 11 C 0.032 3.968 12 H 0.108 0.892 13 C -0.199 4.199 14 C 0.033 3.967 15 N -0.322 5.322 16 C -0.343 4.343 17 H 0.093 0.907 18 C -0.208 4.208 19 N -0.573 5.573 20 Si 0.744 3.256 21 H -0.218 1.218 22 H -0.217 1.217 23 H -0.208 1.208 24 C 0.008 3.992 25 H 0.077 0.923 26 H 0.067 0.933 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.112 0.888 30 H 0.246 0.754 31 H 0.267 0.733 32 H 0.071 0.929 33 H 0.105 0.895 34 H 0.125 0.875 35 H 0.027 0.973 36 H 0.061 0.939 37 H 0.049 0.951 38 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -5.139 -15.998 -12.515 20.951 hybrid contribution -0.279 1.059 -0.247 1.123 sum -5.418 -14.939 -12.762 20.381 Atomic orbital electron populations 1.22059 0.95919 1.01397 1.01952 1.21721 0.94865 0.81884 1.02881 1.47806 1.64532 1.14162 1.05596 1.16827 0.79224 0.84784 0.81675 1.90927 1.42782 1.18293 1.86014 1.22046 1.06151 0.94498 0.95766 1.25336 0.98395 0.95276 0.87288 1.84422 1.56507 1.28292 1.39558 1.28203 0.99047 0.93386 0.85679 1.71050 1.15124 1.14726 1.17818 1.22259 0.97391 0.94086 0.83093 0.89212 1.23507 0.93559 0.99343 1.03451 1.21848 0.90274 0.92116 0.92462 1.44308 1.08390 1.07625 1.71901 1.19060 0.96600 0.85466 1.33125 0.90730 1.24750 0.96015 0.98373 1.01669 1.69804 1.04002 1.34075 1.49396 0.86081 0.77102 0.84418 0.77974 1.21779 1.21715 1.20809 1.21460 0.92800 0.88346 0.96556 0.92335 0.93260 0.91981 0.91373 0.88783 0.75408 0.73335 0.92944 0.89486 0.87533 0.97288 0.93907 0.95057 0.96514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.66 37.16 0.36 -1.47 16 2 C 0.11 1.39 5.67 -4.04 -0.02 1.36 16 3 N -0.59 -9.75 2.54 -165.28 -0.42 -10.17 16 4 C 0.59 10.39 6.73 -12.52 -0.08 10.31 16 5 O -0.51 -10.92 13.28 5.27 0.07 -10.85 16 6 C -0.07 -0.90 6.47 -83.02 -0.54 -1.43 16 7 C 0.01 0.12 11.95 29.96 0.36 0.48 16 8 O -0.20 -1.88 10.73 6.52 0.07 -1.81 16 9 C 0.16 1.28 13.19 51.96 0.69 1.96 16 10 N -0.46 -5.11 6.25 -11.48 -0.07 -5.18 16 11 C 0.13 2.59 3.45 -66.09 -0.23 2.36 16 12 H 0.09 1.55 7.82 -51.93 -0.41 1.15 16 13 C -0.16 -3.40 6.39 -24.58 -0.16 -3.56 16 14 C 0.16 4.14 5.89 -2.53 -0.01 4.12 16 15 N -0.60 -16.52 3.39 -170.07 -0.58 -17.09 16 16 C -0.21 -6.37 10.27 -15.06 -0.15 -6.52 16 17 H 0.07 2.16 7.83 -52.48 -0.41 1.75 16 18 C -0.01 -0.39 5.49 -17.43 -0.10 -0.49 16 19 N -0.92 -28.20 10.09 55.49 0.56 -27.64 16 20 Si 0.91 23.14 29.55 -169.99 -5.02 18.12 16 21 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 22 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 23 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 24 C 0.14 3.15 6.52 -3.06 -0.02 3.13 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 27 H 0.06 0.81 6.56 -51.93 -0.34 0.47 16 28 H 0.07 0.78 7.88 -51.93 -0.41 0.37 16 29 H 0.09 1.14 5.69 -51.93 -0.30 0.85 16 30 H 0.23 2.15 8.06 -52.49 -0.42 1.72 16 31 H 0.25 0.60 8.06 -52.48 -0.42 0.17 16 32 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.09 2.02 5.63 -51.93 -0.29 1.72 16 34 H 0.11 3.14 5.87 -51.93 -0.30 2.83 16 35 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 36 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.03 0.78 6.43 -51.93 -0.33 0.45 16 38 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 LS Contribution 307.67 15.07 4.64 4.64 Total: -1.00 -35.43 307.67 -5.56 -40.99 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: -4.89 Total: -1.25 kcal Atomic # 6 Polarization: 10.17 SS G_CDS: 0.09 Total: 10.26 kcal Atomic # 7 Polarization: -59.58 SS G_CDS: -0.51 Total: -60.09 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: 0.14 Total: -12.66 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -5.02 Total: 18.12 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -35.43 -5.56 -40.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033766022.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.432 kcal (2) G-P(sol) polarization free energy of solvation -35.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds