Wall clock time and date at job start Tue Mar 31 2020 00:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46494 * 109.47173 * 2 1 4 4 C 1.34770 * 120.00521 * 272.95452 * 3 2 1 5 5 O 1.21613 * 120.00231 * 185.02238 * 4 3 2 6 6 C 1.47423 * 120.00051 * 5.02329 * 4 3 2 7 7 C 1.36090 * 126.45146 * 185.69688 * 6 4 3 8 8 O 1.34253 * 106.94711 * 179.84242 * 7 6 4 9 9 C 1.34051 * 108.22925 * 0.42334 * 8 7 6 10 10 N 1.29929 * 109.24137 * 359.73232 * 9 8 7 11 11 C 1.46508 * 119.99580 * 92.95637 * 3 2 1 12 12 H 1.08994 * 110.64560 * 1.68491 * 11 3 2 13 13 C 1.55159 * 110.71909 * 125.02532 * 11 3 2 14 14 C 1.54909 * 101.58267 * 153.86208 * 13 11 3 15 15 N 1.47430 * 104.83060 * 322.99040 * 14 13 11 16 16 C 1.36933 * 125.64476 * 204.16288 * 15 14 13 17 17 H 1.08003 * 119.99733 * 179.97438 * 16 15 14 18 18 C 1.38816 * 120.00466 * 359.95473 * 16 15 14 19 19 N 1.31617 * 119.99529 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00066 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46868 * 90.00564 * 20 18 16 22 22 H 1.48505 * 109.46792 * 210.00031 * 20 18 16 23 23 H 1.48501 * 109.47406 * 330.00437 * 20 18 16 24 24 C 1.47023 * 108.70505 * 24.12861 * 15 14 13 25 25 H 1.08999 * 109.47326 * 179.97438 * 1 2 3 26 26 H 1.09009 * 109.47088 * 299.99851 * 1 2 3 27 27 H 1.09003 * 109.47190 * 59.99787 * 1 2 3 28 28 H 1.08994 * 109.47281 * 120.00464 * 2 1 3 29 29 H 1.09000 * 109.46714 * 240.00580 * 2 1 3 30 30 H 1.07999 * 126.52310 * 359.97438 * 7 6 4 31 31 H 1.08004 * 125.38067 * 179.70147 * 9 8 7 32 32 H 1.08996 * 111.00112 * 271.93726 * 13 11 3 33 33 H 1.08996 * 111.00590 * 35.78824 * 13 11 3 34 34 H 1.08997 * 110.36890 * 204.15339 * 14 13 11 35 35 H 1.09004 * 110.36689 * 81.82598 * 14 13 11 36 36 H 0.97002 * 119.99696 * 179.97438 * 19 18 16 37 37 H 1.08998 * 109.87528 * 239.52531 * 24 15 14 38 38 H 1.08996 * 109.88270 * 118.35678 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1863 2.0366 -1.1655 5 8 2.6772 3.1492 -1.1722 6 6 1.7748 1.4049 -2.4324 7 6 1.9804 1.8959 -3.6849 8 8 1.4537 1.0090 -4.5442 9 6 0.9278 0.0000 -3.8356 10 7 1.1129 0.2240 -2.5692 11 6 2.3242 2.0499 1.2672 12 1 2.1631 1.3741 2.1070 13 6 3.7779 2.5921 1.2648 14 6 3.6741 3.7650 2.2713 15 7 2.3448 4.3544 2.0281 16 6 1.9786 5.6425 2.3142 17 1 0.9759 5.9798 2.0966 18 6 2.8958 6.5147 2.8843 19 7 4.1177 6.1036 3.1493 20 14 2.3963 8.2719 3.2738 21 1 1.8513 8.3372 4.6537 22 1 3.5827 9.1588 3.1677 23 1 1.3579 8.7167 2.3099 24 6 1.4779 3.3305 1.4268 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8901 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 2.4750 2.8216 -3.9392 31 1 0.4285 -0.8627 -4.2516 32 1 4.4778 1.8349 1.6180 33 1 4.0596 2.9507 0.2748 34 1 4.4558 4.5000 2.0795 35 1 3.7433 3.3945 3.2941 36 1 4.7588 6.7132 3.5473 37 1 1.1280 3.6677 0.4511 38 1 0.6279 3.1341 2.0802 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033766022.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:46:44 Heat of formation + Delta-G solvation = 18.914849 kcal Electronic energy + Delta-G solvation = -22544.180757 eV Core-core repulsion = 19196.530803 eV Total energy + Delta-G solvation = -3347.649954 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.34892 -41.25237 -38.50340 -36.92426 -35.66859 -34.20832 -31.65962 -31.36000 -30.55565 -28.89906 -26.70543 -25.24047 -23.80685 -23.65209 -22.23956 -22.08935 -20.48616 -19.03490 -18.51426 -17.68521 -17.55308 -17.13134 -16.71098 -16.22288 -15.91403 -15.71802 -15.31005 -14.91505 -14.74636 -14.39257 -14.13602 -13.71936 -13.64554 -13.31105 -12.95276 -12.90896 -12.72891 -12.55719 -12.27729 -12.22337 -12.02664 -11.88838 -11.72111 -11.62766 -11.20275 -10.77887 -10.68735 -10.16315 -9.59059 -8.87574 -7.76619 -5.20915 0.15913 1.16038 1.43657 1.47296 1.55831 1.73827 2.01842 2.28263 2.50229 3.10330 3.32188 3.68322 3.74067 3.90721 3.93876 4.05679 4.17909 4.28622 4.56739 4.58377 4.63896 4.66094 4.71891 4.75981 4.84598 4.94866 5.04492 5.09522 5.16574 5.28337 5.42472 5.57142 5.63195 5.78619 5.80811 6.30376 6.37194 6.59226 7.10552 7.15640 7.77665 8.42354 9.25308 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.027123 B = 0.004690 C = 0.004397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.104543 B = 5968.955452 C = 6366.376474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.107 3.893 3 N -0.588 5.588 4 C 0.583 3.417 5 O -0.560 6.560 6 C -0.095 4.095 7 C 0.021 3.979 8 O -0.198 6.198 9 C 0.194 3.806 10 N -0.479 5.479 11 C 0.151 3.849 12 H 0.119 0.881 13 C -0.144 4.144 14 C 0.162 3.838 15 N -0.618 5.618 16 C -0.240 4.240 17 H 0.073 0.927 18 C -0.066 4.066 19 N -0.948 5.948 20 Si 0.983 3.017 21 H -0.281 1.281 22 H -0.290 1.290 23 H -0.274 1.274 24 C 0.136 3.864 25 H 0.086 0.914 26 H 0.034 0.966 27 H 0.048 0.952 28 H 0.087 0.913 29 H 0.105 0.895 30 H 0.238 0.762 31 H 0.305 0.695 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.068 0.932 35 H -0.003 1.003 36 H 0.248 0.752 37 H 0.010 0.990 38 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.578 -18.656 -14.278 24.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.014 4.014 3 N -0.318 5.318 4 C 0.371 3.629 5 O -0.439 6.439 6 C -0.213 4.213 7 C -0.054 4.054 8 O -0.083 6.083 9 C -0.034 4.034 10 N -0.208 5.208 11 C 0.047 3.953 12 H 0.136 0.864 13 C -0.184 4.184 14 C 0.037 3.963 15 N -0.344 5.344 16 C -0.369 4.369 17 H 0.091 0.909 18 C -0.259 4.259 19 N -0.598 5.598 20 Si 0.811 3.189 21 H -0.208 1.208 22 H -0.216 1.216 23 H -0.199 1.199 24 C 0.009 3.991 25 H 0.105 0.895 26 H 0.054 0.946 27 H 0.067 0.933 28 H 0.105 0.895 29 H 0.123 0.877 30 H 0.254 0.746 31 H 0.319 0.681 32 H 0.101 0.899 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.015 0.985 36 H 0.057 0.943 37 H 0.028 0.972 38 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -6.460 -18.324 -13.704 23.776 hybrid contribution 0.067 1.680 0.022 1.682 sum -6.392 -16.644 -13.682 22.474 Atomic orbital electron populations 1.21982 0.95114 1.02780 1.00593 1.21993 0.95433 0.79597 1.04354 1.47873 1.64223 1.15439 1.04292 1.17371 0.78146 0.84254 0.83106 1.90893 1.45274 1.20673 1.87021 1.21567 1.08754 0.96359 0.94577 1.25486 0.97492 0.95589 0.86833 1.84476 1.56362 1.28359 1.39106 1.29405 0.96231 0.93177 0.84576 1.70960 1.16149 1.13932 1.19739 1.22002 0.94665 0.93097 0.85574 0.86355 1.23273 0.95967 0.98253 1.00871 1.21610 0.88820 0.92831 0.93069 1.44595 1.09704 1.08029 1.72075 1.19408 0.96861 0.87030 1.33627 0.90879 1.25648 0.96030 1.02550 1.01643 1.70067 1.04832 1.35216 1.49705 0.85011 0.76811 0.79047 0.78029 1.20786 1.21638 1.19890 1.21547 0.93164 0.89347 0.95004 0.89493 0.94641 0.93284 0.89468 0.87710 0.74609 0.68070 0.89852 0.91485 0.91363 0.98525 0.94279 0.97172 0.95948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 9.66 71.98 0.70 -2.41 16 2 C 0.11 2.45 5.67 86.38 0.49 2.94 16 3 N -0.59 -18.97 2.54 -795.09 -2.02 -20.99 16 4 C 0.58 20.76 6.73 86.66 0.58 21.34 16 5 O -0.56 -25.27 13.28 -4.07 -0.05 -25.33 16 6 C -0.09 -2.51 6.47 40.41 0.26 -2.25 16 7 C 0.02 0.44 11.95 67.32 0.80 1.24 16 8 O -0.20 -3.08 10.73 0.41 0.00 -3.07 16 9 C 0.19 2.22 13.19 130.52 1.72 3.94 16 10 N -0.48 -9.39 6.25 -305.15 -1.91 -11.29 16 11 C 0.15 5.73 3.45 46.18 0.16 5.89 16 12 H 0.12 3.84 7.82 -2.39 -0.02 3.82 16 13 C -0.14 -6.24 6.39 31.99 0.20 -6.04 16 14 C 0.16 8.79 5.89 86.85 0.51 9.30 16 15 N -0.62 -35.45 3.39 -691.97 -2.35 -37.80 16 16 C -0.24 -14.77 10.27 84.04 0.86 -13.91 16 17 H 0.07 4.37 7.83 -2.91 -0.02 4.34 16 18 C -0.07 -4.03 5.49 84.86 0.47 -3.56 16 19 N -0.95 -59.87 10.09 21.65 0.22 -59.66 16 20 Si 0.98 48.51 29.55 68.60 2.03 50.53 16 21 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 22 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 23 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 24 C 0.14 6.48 6.52 86.73 0.57 7.04 16 25 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.03 0.84 8.14 -2.38 -0.02 0.82 16 27 H 0.05 1.18 6.56 -2.39 -0.02 1.16 16 28 H 0.09 1.68 7.88 -2.39 -0.02 1.66 16 29 H 0.11 2.24 5.69 -2.39 -0.01 2.23 16 30 H 0.24 4.41 8.06 -2.91 -0.02 4.38 16 31 H 0.30 -0.39 8.06 -2.91 -0.02 -0.41 16 32 H 0.08 3.04 8.14 -2.39 -0.02 3.03 16 33 H 0.07 3.21 5.63 -2.39 -0.01 3.20 16 34 H 0.07 4.24 5.87 -2.39 -0.01 4.22 16 35 H 0.00 -0.18 8.14 -2.38 -0.02 -0.20 16 36 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 37 H 0.01 0.53 6.43 -2.39 -0.02 0.52 16 38 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -81.47 307.67 4.32 -77.15 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: 1.07 Total: 6.92 kcal Atomic # 6 Polarization: 16.21 SS G_CDS: 7.33 Total: 23.54 kcal Atomic # 7 Polarization: -123.69 SS G_CDS: -6.06 Total: -129.74 kcal Atomic # 8 Polarization: -28.35 SS G_CDS: -0.05 Total: -28.40 kcal Atomic # 14 Polarization: 48.51 SS G_CDS: 2.03 Total: 50.53 kcal Total: -81.47 4.32 -77.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033766022.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.069 kcal (2) G-P(sol) polarization free energy of solvation -81.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds