Wall clock time and date at job start Tue Mar 31 2020 01:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36445 * 124.85001 * 2 1 4 4 C 1.34492 * 108.85335 * 179.73297 * 3 2 1 5 5 C 1.46690 * 106.33349 * 0.43440 * 4 3 2 6 6 C 1.47255 * 126.94074 * 179.82618 * 5 4 3 7 7 O 1.21628 * 120.00145 * 179.68827 * 6 5 4 8 8 N 1.34778 * 120.00556 * 359.69480 * 6 5 4 9 9 C 1.46494 * 120.00464 * 179.97438 * 8 6 5 10 10 H 1.09000 * 110.64420 * 31.85152 * 9 8 6 11 11 C 1.54337 * 111.00188 * 268.77618 * 9 8 6 12 12 N 1.47017 * 107.26706 * 219.60109 * 11 9 8 13 13 C 1.36939 * 125.64726 * 178.85094 * 12 11 9 14 14 H 1.08003 * 119.99984 * 342.94408 * 13 12 11 15 15 C 1.38808 * 120.00034 * 162.94507 * 13 12 11 16 16 N 1.31621 * 119.99791 * 332.14307 * 15 13 12 17 17 Si 1.86799 * 120.00133 * 151.86858 * 15 13 12 18 18 H 1.48499 * 109.47248 * 270.27684 * 17 15 13 19 19 H 1.48498 * 109.47068 * 30.27326 * 17 15 13 20 20 H 1.48493 * 109.47381 * 150.27367 * 17 15 13 21 21 C 1.47418 * 108.70401 * 358.58442 * 12 11 9 22 22 C 1.54916 * 104.83113 * 24.35737 * 21 12 11 23 23 H 1.08998 * 111.00226 * 81.06601 * 22 21 12 24 24 O 1.42900 * 111.00282 * 204.87893 * 22 21 12 25 25 C 1.34662 * 124.84683 * 180.02562 * 2 1 3 26 26 H 1.09000 * 109.47479 * 269.97085 * 1 2 3 27 27 H 1.08995 * 109.47272 * 29.97627 * 1 2 3 28 28 H 1.09001 * 109.47258 * 149.97229 * 1 2 3 29 29 H 1.07995 * 125.57136 * 0.02562 * 3 2 1 30 30 H 1.07998 * 126.83095 * 180.26705 * 4 3 2 31 31 H 0.97001 * 119.99699 * 359.97438 * 8 6 5 32 32 H 1.09002 * 109.99092 * 100.12144 * 11 9 8 33 33 H 1.09008 * 109.77657 * 338.96117 * 11 9 8 34 34 H 0.96997 * 120.00038 * 353.69163 * 16 15 13 35 35 H 1.09001 * 110.36701 * 143.19505 * 21 12 11 36 36 H 1.09000 * 110.37153 * 265.51974 * 21 12 11 37 37 H 0.96709 * 113.99516 * 298.54258 * 24 22 21 38 38 H 1.07992 * 125.80687 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2447 1.1197 0.0000 4 6 3.5375 0.7491 0.0059 5 6 3.5462 -0.7177 -0.0008 6 6 4.7283 -1.5958 -0.0014 7 8 4.5885 -2.8040 -0.0017 8 7 5.9653 -1.0607 -0.0016 9 6 7.1414 -1.9342 -0.0017 10 1 6.9332 -2.8589 -0.5399 11 6 7.6039 -2.2392 1.4388 12 7 9.0739 -2.2160 1.4392 13 6 9.8750 -2.4173 2.5315 14 1 9.4615 -2.3391 3.5261 15 6 11.2184 -2.7218 2.3603 16 7 11.6189 -3.3419 1.2706 17 14 12.4589 -2.2448 3.6729 18 1 12.9809 -0.8838 3.3893 19 1 11.8000 -2.2548 5.0036 20 1 13.5818 -3.2164 3.6693 21 6 9.5428 -1.9465 0.0678 22 6 8.3662 -1.2058 -0.6152 23 1 8.3644 -0.1482 -0.3513 24 8 8.4073 -1.3769 -2.0334 25 6 2.2344 -1.1051 -0.0005 26 1 -0.3634 -0.0005 1.0276 27 1 -0.3633 0.8901 -0.5134 28 1 -0.3634 -0.8897 -0.5143 29 1 1.8828 2.1372 0.0004 30 1 4.3980 1.4017 0.0115 31 1 6.0769 -0.0971 -0.0017 32 1 7.2486 -3.2235 1.7438 33 1 7.2209 -1.4777 2.1182 34 1 10.9669 -3.6674 0.6303 35 1 10.4296 -1.3130 0.0877 36 1 9.7550 -2.8813 -0.4512 37 1 9.2052 -1.0224 -2.4493 38 1 1.8767 -2.1241 -0.0006 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076880363.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:29 Heat of formation + Delta-G solvation = -3.935874 kcal Electronic energy + Delta-G solvation = -21507.366801 eV Core-core repulsion = 18158.725965 eV Total energy + Delta-G solvation = -3348.640836 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.32725 -39.28940 -37.72952 -35.21058 -34.02496 -32.99313 -31.64105 -29.33686 -28.35038 -27.49831 -26.42847 -24.23467 -22.55606 -20.68020 -20.56513 -19.93512 -19.52268 -18.04329 -17.49311 -16.92969 -15.75500 -15.67287 -15.58979 -14.55262 -14.42569 -14.08323 -13.94511 -13.64922 -13.49781 -13.26623 -12.98503 -12.77014 -12.63687 -12.41170 -12.22666 -12.04419 -11.57374 -11.39387 -10.71450 -10.51944 -10.04106 -10.03477 -9.89168 -9.62771 -9.37492 -8.83515 -8.67589 -8.45407 -8.35617 -6.96562 -6.09251 -3.15835 1.78200 2.29906 2.60669 3.51904 3.53994 3.59570 3.71613 3.76593 4.39205 4.41262 4.64062 4.71422 4.74699 4.83813 4.99909 5.10677 5.24838 5.34394 5.36039 5.52607 5.61582 5.65786 5.76488 5.93065 6.06112 6.07147 6.54903 6.60289 6.66672 6.79062 6.83969 6.93185 7.00399 7.04097 7.77106 7.89554 7.98225 8.47676 8.62104 9.00820 9.80208 10.32812 11.22524 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.030823 B = 0.003605 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.206186 B = 7765.012897 C = 8087.379735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.450 5.450 3 C -0.021 4.021 4 C -0.168 4.168 5 C -0.227 4.227 6 C 0.590 3.410 7 O -0.554 6.554 8 N -0.710 5.710 9 C 0.145 3.855 10 H 0.102 0.898 11 C 0.128 3.872 12 N -0.598 5.598 13 C -0.336 4.336 14 H 0.068 0.932 15 C -0.026 4.026 16 N -0.917 5.917 17 Si 1.070 2.930 18 H -0.293 1.293 19 H -0.292 1.292 20 H -0.290 1.290 21 C 0.120 3.880 22 C 0.077 3.923 23 H 0.066 0.934 24 O -0.562 6.562 25 C 0.071 3.929 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.166 0.834 30 H 0.145 0.855 31 H 0.398 0.602 32 H 0.035 0.965 33 H 0.033 0.967 34 H 0.269 0.731 35 H 0.057 0.943 36 H 0.039 0.961 37 H 0.377 0.623 38 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.853 11.449 -4.937 23.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.126 5.126 3 C -0.147 4.147 4 C -0.192 4.192 5 C -0.237 4.237 6 C 0.379 3.621 7 O -0.433 6.433 8 N -0.359 5.359 9 C 0.039 3.961 10 H 0.120 0.880 11 C 0.002 3.998 12 N -0.327 5.327 13 C -0.464 4.464 14 H 0.086 0.914 15 C -0.228 4.228 16 N -0.558 5.558 17 Si 0.899 3.101 18 H -0.221 1.221 19 H -0.218 1.218 20 H -0.216 1.216 21 C -0.007 4.007 22 C 0.017 3.983 23 H 0.084 0.916 24 O -0.367 6.367 25 C -0.064 4.064 26 H 0.093 0.907 27 H 0.103 0.897 28 H 0.104 0.896 29 H 0.183 0.817 30 H 0.163 0.837 31 H 0.232 0.768 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.056 0.944 37 H 0.224 0.776 38 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -19.228 10.331 -4.355 22.258 hybrid contribution -1.098 0.739 -0.374 1.376 sum -20.326 11.070 -4.729 23.623 Atomic orbital electron populations 1.22100 0.77000 1.04577 1.03510 1.43603 1.06701 1.05953 1.56359 1.21714 0.90573 0.91213 1.11174 1.22069 0.96213 0.93302 1.07606 1.20408 0.92620 0.93342 1.17354 1.17359 0.82334 0.87046 0.75381 1.90770 1.86545 1.14726 1.51254 1.45676 1.05139 1.09923 1.75194 1.21921 0.82914 0.94243 0.96986 0.87989 1.21704 0.86276 0.99050 0.92789 1.44388 0.99579 1.83790 1.04945 1.19817 0.92995 1.48198 0.85399 0.91392 1.25799 0.96929 0.97412 1.02639 1.70749 1.38166 1.33611 1.13257 0.83448 0.75782 0.76352 0.74492 1.22080 1.21836 1.21607 1.22163 0.94426 0.97501 0.86605 1.23368 0.96513 0.98063 0.80403 0.91641 1.86469 1.45865 1.84577 1.19756 1.21786 0.89831 0.91718 1.03034 0.90687 0.89675 0.89625 0.81692 0.83688 0.76824 0.94728 0.94900 0.91903 0.92499 0.94371 0.77595 0.80825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.31 11.03 59.85 0.66 0.97 16 2 N -0.45 -4.02 3.09 -124.53 -0.38 -4.41 16 3 C -0.02 -0.18 11.34 -16.82 -0.19 -0.38 16 4 C -0.17 -1.87 10.56 -37.49 -0.40 -2.27 16 5 C -0.23 -3.21 6.29 -103.35 -0.65 -3.86 16 6 C 0.59 10.45 7.81 -12.60 -0.10 10.35 16 7 O -0.55 -11.80 16.56 5.25 0.09 -11.71 16 8 N -0.71 -11.94 5.11 -53.15 -0.27 -12.21 16 9 C 0.14 2.88 3.04 -66.09 -0.20 2.68 16 10 H 0.10 2.27 7.55 -51.93 -0.39 1.88 16 11 C 0.13 2.95 7.01 -3.06 -0.02 2.93 16 12 N -0.60 -15.68 3.29 -170.06 -0.56 -16.24 16 13 C -0.34 -9.72 10.02 -15.06 -0.15 -9.87 16 14 H 0.07 1.96 7.97 -52.48 -0.42 1.55 16 15 C -0.03 -0.75 5.09 -17.43 -0.09 -0.84 16 16 N -0.92 -28.00 12.92 55.49 0.72 -27.28 16 17 Si 1.07 25.60 30.00 -169.99 -5.10 20.50 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 19 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 21 C 0.12 2.81 5.03 -2.53 -0.01 2.80 16 22 C 0.08 1.45 4.06 -24.58 -0.10 1.35 16 23 H 0.07 1.12 8.01 -51.93 -0.42 0.70 16 24 O -0.56 -9.66 13.47 -35.23 -0.47 -10.13 16 25 C 0.07 0.84 11.12 -16.84 -0.19 0.66 16 26 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 27 H 0.08 0.23 8.13 -51.93 -0.42 -0.20 16 28 H 0.08 0.29 8.13 -51.93 -0.42 -0.13 16 29 H 0.17 0.94 8.06 -52.49 -0.42 0.51 16 30 H 0.15 1.36 7.70 -52.49 -0.40 0.95 16 31 H 0.40 5.57 7.69 -40.82 -0.31 5.26 16 32 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.03 0.74 8.03 -51.92 -0.42 0.32 16 34 H 0.27 8.31 6.05 -40.82 -0.25 8.06 16 35 H 0.06 1.40 7.94 -51.93 -0.41 0.99 16 36 H 0.04 0.98 6.81 -51.93 -0.35 0.62 16 37 H 0.38 4.83 9.11 45.56 0.42 5.25 16 38 H 0.17 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 323.67 15.07 4.88 4.88 Total: -1.00 -37.02 323.67 -6.84 -43.85 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -4.29 Total: 8.24 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: -1.44 Total: 4.52 kcal Atomic # 7 Polarization: -59.64 SS G_CDS: -0.50 Total: -60.13 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.39 Total: -21.84 kcal Atomic # 14 Polarization: 25.60 SS G_CDS: -5.10 Total: 20.50 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -37.02 -6.84 -43.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076880363.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.915 kcal (2) G-P(sol) polarization free energy of solvation -37.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds