Wall clock time and date at job start Tue Mar 31 2020 01:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36445 * 124.85001 * 2 1 4 4 C 1.34492 * 108.85335 * 179.73297 * 3 2 1 5 5 C 1.46690 * 106.33349 * 0.43440 * 4 3 2 6 6 C 1.47255 * 126.94074 * 179.82618 * 5 4 3 7 7 O 1.21628 * 120.00145 * 179.68827 * 6 5 4 8 8 N 1.34778 * 120.00556 * 359.69480 * 6 5 4 9 9 C 1.46494 * 120.00464 * 179.97438 * 8 6 5 10 10 H 1.09000 * 110.64420 * 31.85152 * 9 8 6 11 11 C 1.54337 * 111.00188 * 268.77618 * 9 8 6 12 12 N 1.47017 * 107.26706 * 219.60109 * 11 9 8 13 13 C 1.36939 * 125.64726 * 178.85094 * 12 11 9 14 14 H 1.08003 * 119.99984 * 342.94408 * 13 12 11 15 15 C 1.38808 * 120.00034 * 162.94507 * 13 12 11 16 16 N 1.31621 * 119.99791 * 332.14307 * 15 13 12 17 17 Si 1.86799 * 120.00133 * 151.86858 * 15 13 12 18 18 H 1.48499 * 109.47248 * 270.27684 * 17 15 13 19 19 H 1.48498 * 109.47068 * 30.27326 * 17 15 13 20 20 H 1.48493 * 109.47381 * 150.27367 * 17 15 13 21 21 C 1.47418 * 108.70401 * 358.58442 * 12 11 9 22 22 C 1.54916 * 104.83113 * 24.35737 * 21 12 11 23 23 H 1.08998 * 111.00226 * 81.06601 * 22 21 12 24 24 O 1.42900 * 111.00282 * 204.87893 * 22 21 12 25 25 C 1.34662 * 124.84683 * 180.02562 * 2 1 3 26 26 H 1.09000 * 109.47479 * 269.97085 * 1 2 3 27 27 H 1.08995 * 109.47272 * 29.97627 * 1 2 3 28 28 H 1.09001 * 109.47258 * 149.97229 * 1 2 3 29 29 H 1.07995 * 125.57136 * 0.02562 * 3 2 1 30 30 H 1.07998 * 126.83095 * 180.26705 * 4 3 2 31 31 H 0.97001 * 119.99699 * 359.97438 * 8 6 5 32 32 H 1.09002 * 109.99092 * 100.12144 * 11 9 8 33 33 H 1.09008 * 109.77657 * 338.96117 * 11 9 8 34 34 H 0.96997 * 120.00038 * 353.69163 * 16 15 13 35 35 H 1.09001 * 110.36701 * 143.19505 * 21 12 11 36 36 H 1.09000 * 110.37153 * 265.51974 * 21 12 11 37 37 H 0.96709 * 113.99516 * 298.54258 * 24 22 21 38 38 H 1.07992 * 125.80687 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2447 1.1197 0.0000 4 6 3.5375 0.7491 0.0059 5 6 3.5462 -0.7177 -0.0008 6 6 4.7283 -1.5958 -0.0014 7 8 4.5885 -2.8040 -0.0017 8 7 5.9653 -1.0607 -0.0016 9 6 7.1414 -1.9342 -0.0017 10 1 6.9332 -2.8589 -0.5399 11 6 7.6039 -2.2392 1.4388 12 7 9.0739 -2.2160 1.4392 13 6 9.8750 -2.4173 2.5315 14 1 9.4615 -2.3391 3.5261 15 6 11.2184 -2.7218 2.3603 16 7 11.6189 -3.3419 1.2706 17 14 12.4589 -2.2448 3.6729 18 1 12.9809 -0.8838 3.3893 19 1 11.8000 -2.2548 5.0036 20 1 13.5818 -3.2164 3.6693 21 6 9.5428 -1.9465 0.0678 22 6 8.3662 -1.2058 -0.6152 23 1 8.3644 -0.1482 -0.3513 24 8 8.4073 -1.3769 -2.0334 25 6 2.2344 -1.1051 -0.0005 26 1 -0.3634 -0.0005 1.0276 27 1 -0.3633 0.8901 -0.5134 28 1 -0.3634 -0.8897 -0.5143 29 1 1.8828 2.1372 0.0004 30 1 4.3980 1.4017 0.0115 31 1 6.0769 -0.0971 -0.0017 32 1 7.2486 -3.2235 1.7438 33 1 7.2209 -1.4777 2.1182 34 1 10.9669 -3.6674 0.6303 35 1 10.4296 -1.3130 0.0877 36 1 9.7550 -2.8813 -0.4512 37 1 9.2052 -1.0224 -2.4493 38 1 1.8767 -2.1241 -0.0006 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076880363.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:28 Heat of formation + Delta-G solvation = -33.206081 kcal Electronic energy + Delta-G solvation = -21508.636052 eV Core-core repulsion = 18158.725965 eV Total energy + Delta-G solvation = -3349.910087 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.14918 -40.79398 -39.32182 -36.89163 -35.67086 -33.97966 -33.33881 -30.37075 -29.98351 -29.10084 -27.37298 -26.14585 -23.76581 -22.48826 -21.97770 -21.06014 -20.64339 -19.67714 -18.89946 -18.44783 -17.25683 -16.87449 -16.38282 -16.10688 -15.93631 -15.50355 -15.46335 -15.34412 -14.93288 -14.39473 -14.25593 -14.02232 -13.90292 -13.34510 -13.31947 -13.26024 -13.01260 -12.94892 -12.65303 -12.52141 -11.87951 -11.79591 -11.71155 -11.26486 -10.96092 -10.61002 -10.22477 -9.52332 -9.29896 -9.13754 -8.38118 -5.42842 0.73450 1.53147 1.58824 1.66755 1.84752 1.86508 2.30736 2.53825 2.61492 2.90740 3.14883 3.46948 3.67366 3.86581 3.96033 3.98778 4.00520 4.08776 4.23562 4.33546 4.40823 4.48262 4.59562 4.71913 4.75970 4.84125 4.88230 5.01959 5.02462 5.14346 5.41274 5.59672 5.75655 6.05833 6.22782 6.35542 6.61260 6.73698 6.79695 7.28452 7.61303 8.15789 8.92162 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.030823 B = 0.003605 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.206186 B = 7765.012897 C = 8087.379735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.442 5.442 3 C -0.005 4.005 4 C -0.185 4.185 5 C -0.266 4.266 6 C 0.585 3.415 7 O -0.602 6.602 8 N -0.698 5.698 9 C 0.157 3.843 10 H 0.074 0.926 11 C 0.131 3.869 12 N -0.617 5.617 13 C -0.353 4.353 14 H 0.062 0.938 15 C -0.075 4.075 16 N -0.941 5.941 17 Si 1.125 2.875 18 H -0.277 1.277 19 H -0.273 1.273 20 H -0.293 1.293 21 C 0.124 3.876 22 C 0.105 3.895 23 H 0.097 0.903 24 O -0.565 6.565 25 C 0.068 3.932 26 H 0.087 0.913 27 H 0.110 0.890 28 H 0.094 0.906 29 H 0.206 0.794 30 H 0.160 0.840 31 H 0.414 0.586 32 H 0.006 0.994 33 H 0.043 0.957 34 H 0.254 0.746 35 H 0.044 0.956 36 H 0.010 0.990 37 H 0.399 0.601 38 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.526 14.534 -4.865 26.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.117 5.117 3 C -0.132 4.132 4 C -0.208 4.208 5 C -0.276 4.276 6 C 0.376 3.624 7 O -0.485 6.485 8 N -0.348 5.348 9 C 0.051 3.949 10 H 0.092 0.908 11 C 0.004 3.996 12 N -0.345 5.345 13 C -0.481 4.481 14 H 0.080 0.920 15 C -0.271 4.271 16 N -0.583 5.583 17 Si 0.948 3.052 18 H -0.203 1.203 19 H -0.198 1.198 20 H -0.220 1.220 21 C -0.003 4.003 22 C 0.044 3.956 23 H 0.115 0.885 24 O -0.372 6.372 25 C -0.069 4.069 26 H 0.106 0.894 27 H 0.129 0.871 28 H 0.113 0.887 29 H 0.223 0.777 30 H 0.177 0.823 31 H 0.251 0.749 32 H 0.024 0.976 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.028 0.972 37 H 0.250 0.750 38 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -20.945 13.483 -4.307 25.279 hybrid contribution -0.728 -0.243 -0.424 0.877 sum -21.673 13.240 -4.731 25.834 Atomic orbital electron populations 1.22464 0.74079 1.06418 1.04931 1.43939 1.08439 1.05045 1.54245 1.22334 0.89810 0.92656 1.08408 1.22305 0.98058 0.91744 1.08701 1.20279 0.91878 0.94625 1.20866 1.18001 0.83313 0.86958 0.74085 1.90732 1.87194 1.16989 1.53616 1.45461 1.04043 1.10315 1.75003 1.21461 0.84626 0.94217 0.94638 0.90802 1.21717 0.84866 0.97796 0.95190 1.44642 1.00738 1.83721 1.05448 1.20098 0.93821 1.47998 0.86164 0.91988 1.27344 0.99030 0.96706 1.04014 1.70878 1.37674 1.35589 1.14180 0.82731 0.73317 0.76415 0.72706 1.20323 1.19824 1.21982 1.22107 0.95968 0.96553 0.85646 1.23024 0.93051 0.98603 0.80924 0.88499 1.86438 1.47356 1.85023 1.18422 1.21883 0.89746 0.92854 1.02464 0.89422 0.87099 0.88691 0.77724 0.82287 0.74863 0.97591 0.93920 0.93556 0.93803 0.97225 0.75040 0.80635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.32 11.03 127.77 1.41 1.73 16 2 N -0.44 -6.58 3.09 -547.91 -1.69 -8.27 16 3 C -0.01 -0.08 11.34 83.12 0.94 0.87 16 4 C -0.18 -3.69 10.56 23.62 0.25 -3.44 16 5 C -0.27 -7.36 6.29 -19.04 -0.12 -7.48 16 6 C 0.58 21.14 7.81 86.61 0.68 21.82 16 7 O -0.60 -26.95 16.56 -4.12 -0.07 -27.02 16 8 N -0.70 -23.39 5.11 -440.32 -2.25 -25.64 16 9 C 0.16 6.41 3.04 46.18 0.14 6.55 16 10 H 0.07 3.46 7.55 -2.39 -0.02 3.44 16 11 C 0.13 6.22 7.01 86.73 0.61 6.83 16 12 N -0.62 -33.26 3.29 -691.96 -2.28 -35.54 16 13 C -0.35 -20.79 10.02 84.03 0.84 -19.95 16 14 H 0.06 3.65 7.97 -2.91 -0.02 3.62 16 15 C -0.07 -4.38 5.09 84.86 0.43 -3.95 16 16 N -0.94 -58.91 12.92 21.65 0.28 -58.63 16 17 Si 1.13 51.59 30.00 68.60 2.06 53.65 16 18 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 19 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 20 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 21 C 0.12 5.95 5.03 86.86 0.44 6.39 16 22 C 0.10 3.87 4.06 31.99 0.13 4.00 16 23 H 0.10 3.06 8.01 -2.39 -0.02 3.04 16 24 O -0.56 -18.72 13.47 -148.98 -2.01 -20.73 16 25 C 0.07 1.54 11.12 83.92 0.93 2.47 16 26 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 27 H 0.11 0.06 8.13 -2.39 -0.02 0.04 16 28 H 0.09 0.35 8.13 -2.39 -0.02 0.33 16 29 H 0.21 1.20 8.06 -2.91 -0.02 1.18 16 30 H 0.16 2.54 7.70 -2.91 -0.02 2.52 16 31 H 0.41 11.00 7.69 -92.71 -0.71 10.29 16 32 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.04 1.94 8.03 -2.38 -0.02 1.92 16 34 H 0.25 16.35 6.05 -92.71 -0.56 15.79 16 35 H 0.04 2.20 7.94 -2.39 -0.02 2.18 16 36 H 0.01 0.53 6.81 -2.39 -0.02 0.52 16 37 H 0.40 9.48 9.11 -74.05 -0.67 8.81 16 38 H 0.18 3.74 8.06 -2.91 -0.02 3.71 16 Total: -1.00 -83.96 323.67 0.63 -83.33 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: -0.09 Total: 23.02 kcal Atomic # 6 Polarization: 9.14 SS G_CDS: 6.68 Total: 15.82 kcal Atomic # 7 Polarization: -122.14 SS G_CDS: -5.94 Total: -128.08 kcal Atomic # 8 Polarization: -45.67 SS G_CDS: -2.08 Total: -47.75 kcal Atomic # 14 Polarization: 51.59 SS G_CDS: 2.06 Total: 53.65 kcal Total: -83.96 0.63 -83.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076880363.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.124 kcal (2) G-P(sol) polarization free energy of solvation -83.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds