Wall clock time and date at job start Tue Mar 31 2020 00:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42894 * 109.47197 * 2 1 4 4 C 1.35687 * 117.00296 * 180.02562 * 3 2 1 5 5 C 1.38894 * 119.62715 * 180.02562 * 4 3 2 6 6 C 1.39571 * 118.94302 * 180.22942 * 5 4 3 7 7 C 1.48164 * 120.88535 * 179.74619 * 6 5 4 8 8 O 1.21509 * 120.00286 * 359.97438 * 7 6 5 9 9 N 1.34781 * 119.99659 * 179.97438 * 7 6 5 10 10 C 1.46498 * 119.99804 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.46829 * 180.02562 * 10 9 7 12 12 N 1.46507 * 109.47020 * 179.97438 * 11 10 9 13 13 C 1.36933 * 119.99847 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00138 * 0.02562 * 13 12 11 15 15 C 1.38819 * 119.99882 * 179.97438 * 13 12 11 16 16 N 1.31620 * 119.99777 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 119.99980 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46838 * 90.00557 * 17 15 13 19 19 H 1.48499 * 109.46982 * 210.00249 * 17 15 13 20 20 H 1.48496 * 109.47239 * 330.00460 * 17 15 13 21 21 C 1.39965 * 118.21861 * 359.50943 * 6 5 4 22 22 C 1.37968 * 119.13541 * 0.48937 * 21 6 5 23 23 N 1.31908 * 120.97683 * 359.74756 * 22 21 6 24 24 H 1.09001 * 109.47308 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46863 * 300.00230 * 1 2 3 26 26 H 1.09000 * 109.46918 * 60.00415 * 1 2 3 27 27 H 1.08998 * 109.46863 * 239.99770 * 2 1 3 28 28 H 1.08998 * 109.46839 * 120.00539 * 2 1 3 29 29 H 1.08002 * 120.52328 * 359.94735 * 5 4 3 30 30 H 0.96997 * 119.99796 * 0.02562 * 9 7 6 31 31 H 1.09004 * 109.46972 * 299.99741 * 10 9 7 32 32 H 1.09001 * 109.47236 * 60.00183 * 10 9 7 33 33 H 1.08996 * 109.46967 * 299.99729 * 11 10 9 34 34 H 1.08995 * 109.47117 * 60.00246 * 11 10 9 35 35 H 0.96997 * 119.99615 * 359.97438 * 12 11 10 36 36 H 0.97000 * 119.99981 * 179.97438 * 16 15 13 37 37 H 1.08000 * 120.43136 * 180.24469 * 21 6 5 38 38 H 1.08001 * 119.51238 * 179.77583 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3516 1.5250 -0.0005 5 6 3.8740 2.8120 0.0000 6 6 5.2598 2.9784 -0.0055 7 6 5.8633 4.3315 -0.0108 8 8 5.1498 5.3151 -0.0109 9 7 7.2038 4.4714 -0.0155 10 6 7.8006 5.8093 -0.0202 11 6 9.3257 5.6874 -0.0256 12 7 9.9226 7.0254 -0.0310 13 6 11.2845 7.1675 -0.0359 14 1 11.9187 6.2933 -0.0362 15 6 11.8501 8.4352 -0.0414 16 7 11.0771 9.5006 -0.0415 17 14 13.7079 8.6291 -0.0474 18 1 14.1961 8.6763 -1.4490 19 1 14.0763 9.8886 0.6477 20 1 14.3281 7.4767 0.6543 21 6 6.0639 1.8328 -0.0007 22 6 5.4635 0.5906 -0.0011 23 7 4.1498 0.4715 -0.0010 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.2183 3.6702 -0.0001 30 1 7.7733 3.6863 -0.0158 31 1 7.4764 6.3486 -0.9103 32 1 7.4823 6.3523 0.8697 33 1 9.6502 5.1480 0.8641 34 1 9.6436 5.1447 -0.9158 35 1 9.3530 7.8105 -0.0310 36 1 11.4723 10.3865 -0.0450 37 1 7.1404 1.9201 -0.0007 38 1 6.0782 -0.2974 -0.0011 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133604682.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:52:56 Heat of formation + Delta-G solvation = -26.644991 kcal Electronic energy + Delta-G solvation = -20230.595324 eV Core-core repulsion = 16880.969747 eV Total energy + Delta-G solvation = -3349.625577 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.10687 -39.59898 -38.10541 -35.81197 -34.02289 -32.92500 -32.44722 -31.20939 -30.20739 -27.95799 -25.30597 -23.79806 -23.60007 -22.85255 -21.55394 -20.76559 -18.91604 -17.54035 -17.35738 -16.64029 -16.51233 -15.93546 -15.57284 -15.48648 -14.68447 -14.46078 -14.36704 -14.19200 -13.84657 -13.75365 -13.23397 -13.02333 -12.87605 -12.69232 -12.31176 -11.89830 -11.54039 -11.15656 -11.13237 -10.87408 -10.83669 -10.43093 -10.21912 -10.13990 -9.91267 -9.76050 -9.07880 -8.90918 -8.87275 -7.03004 -5.82311 -3.13406 0.42778 0.80693 2.54740 2.75275 3.10809 3.40668 3.45549 3.47623 3.56069 3.92669 4.33881 4.55382 4.61849 4.63833 4.64835 4.71663 4.77200 5.00398 5.26497 5.36572 5.43171 5.45298 5.46525 5.48151 5.66158 5.71252 5.73877 5.89163 5.97853 6.07405 6.36403 6.64018 6.64765 6.89820 7.41539 7.45246 7.63110 8.09357 8.35007 9.46425 10.00503 10.35172 11.40142 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.057249 B = 0.002392 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.973317 B =11701.174027 C =12159.080000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.066 3.934 3 O -0.305 6.305 4 C 0.320 3.680 5 C -0.133 4.133 6 C -0.047 4.047 7 C 0.554 3.446 8 O -0.526 6.526 9 N -0.711 5.711 10 C 0.109 3.891 11 C 0.144 3.856 12 N -0.729 5.729 13 C -0.245 4.245 14 H 0.072 0.928 15 C -0.012 4.012 16 N -0.930 5.930 17 Si 0.911 3.089 18 H -0.289 1.289 19 H -0.290 1.290 20 H -0.281 1.281 21 C -0.182 4.182 22 C 0.138 3.862 23 N -0.530 5.530 24 H 0.079 0.921 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.155 0.845 30 H 0.401 0.599 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.025 0.975 34 H 0.025 0.975 35 H 0.387 0.613 36 H 0.257 0.743 37 H 0.144 0.856 38 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.765 -22.015 0.119 27.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.009 4.009 3 O -0.212 6.212 4 C 0.141 3.859 5 C -0.155 4.155 6 C -0.058 4.058 7 C 0.339 3.661 8 O -0.402 6.402 9 N -0.363 5.363 10 C -0.014 4.014 11 C 0.016 3.984 12 N -0.374 5.374 13 C -0.376 4.376 14 H 0.090 0.910 15 C -0.208 4.208 16 N -0.578 5.578 17 Si 0.742 3.258 18 H -0.216 1.216 19 H -0.217 1.217 20 H -0.207 1.207 21 C -0.203 4.203 22 C -0.017 4.017 23 N -0.254 5.254 24 H 0.098 0.902 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.173 0.827 30 H 0.236 0.764 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.043 0.957 34 H 0.043 0.957 35 H 0.220 0.780 36 H 0.067 0.933 37 H 0.162 0.838 38 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -17.687 -21.926 0.128 28.171 hybrid contribution 1.613 0.591 -0.016 1.718 sum -16.074 -21.335 0.111 26.713 Atomic orbital electron populations 1.21832 0.92912 1.02929 1.03486 1.22629 0.94843 0.80865 1.02554 1.86261 1.16461 1.30840 1.87621 1.19629 0.84249 0.89435 0.92542 1.21151 0.94661 0.96465 1.03217 1.20196 0.93303 0.93980 0.98300 1.18038 0.82599 0.87940 0.77529 1.90809 1.61076 1.39383 1.48943 1.45820 1.05942 1.10492 1.74017 1.21677 0.94544 0.82163 1.02985 1.20760 0.88642 0.90454 0.98535 1.42179 1.04483 1.01046 1.89730 1.19185 0.82551 0.92304 1.43603 0.90992 1.24794 0.98053 0.95396 1.02592 1.69667 1.33774 0.97282 1.57051 0.86137 0.85013 0.77127 0.77553 1.21615 1.21671 1.20699 1.22204 1.01445 0.92654 1.03992 1.22371 0.88922 0.97264 0.93177 1.67207 1.06891 1.33322 1.18010 0.90246 0.91553 0.91547 0.91532 0.91535 0.82730 0.76413 0.90859 0.90852 0.95687 0.95699 0.77959 0.93324 0.83800 0.81605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 10.28 37.16 0.38 -0.49 16 2 C 0.07 0.52 6.03 37.16 0.22 0.75 16 3 O -0.30 -3.29 10.11 -18.76 -0.19 -3.48 16 4 C 0.32 3.66 7.49 -17.16 -0.13 3.53 16 5 C -0.13 -1.60 9.61 -38.84 -0.37 -1.98 16 6 C -0.05 -0.55 5.91 -104.68 -0.62 -1.17 16 7 C 0.55 7.97 7.80 -12.18 -0.09 7.88 16 8 O -0.53 -9.58 16.44 5.36 0.09 -9.49 16 9 N -0.71 -9.38 5.51 -61.15 -0.34 -9.72 16 10 C 0.11 1.82 5.79 -4.04 -0.02 1.79 16 11 C 0.14 2.73 6.37 -4.04 -0.03 2.70 16 12 N -0.73 -18.21 5.60 -59.91 -0.34 -18.55 16 13 C -0.25 -6.77 9.99 -15.06 -0.15 -6.92 16 14 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 15 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 16 N -0.93 -28.02 13.06 55.49 0.72 -27.30 16 17 Si 0.91 22.10 29.55 -169.99 -5.02 17.08 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 C -0.18 -1.58 9.61 -39.03 -0.38 -1.95 16 22 C 0.14 1.13 11.17 -17.62 -0.20 0.94 16 23 N -0.53 -5.50 9.18 -13.38 -0.12 -5.62 16 24 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 28 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 29 H 0.16 1.90 7.74 -52.49 -0.41 1.50 16 30 H 0.40 4.00 6.61 -40.82 -0.27 3.73 16 31 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.39 10.24 7.67 -40.82 -0.31 9.93 16 36 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 37 H 0.14 0.85 6.53 -52.49 -0.34 0.51 16 38 H 0.17 0.80 8.06 -52.49 -0.42 0.38 16 LS Contribution 332.27 15.07 5.01 5.01 Total: -1.00 -33.66 332.27 -6.77 -40.43 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -5.10 Total: 6.99 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: -1.48 Total: 4.65 kcal Atomic # 7 Polarization: -61.11 SS G_CDS: -0.07 Total: -61.18 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -0.10 Total: -12.98 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.66 -6.77 -40.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133604682.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.785 kcal (2) G-P(sol) polarization free energy of solvation -33.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds