Wall clock time and date at job start Tue Mar 31 2020 00:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42894 * 109.47197 * 2 1 4 4 C 1.35687 * 117.00296 * 180.02562 * 3 2 1 5 5 C 1.38894 * 119.62715 * 180.02562 * 4 3 2 6 6 C 1.39571 * 118.94302 * 180.22942 * 5 4 3 7 7 C 1.48164 * 120.88535 * 179.74619 * 6 5 4 8 8 O 1.21509 * 120.00286 * 359.97438 * 7 6 5 9 9 N 1.34781 * 119.99659 * 179.97438 * 7 6 5 10 10 C 1.46498 * 119.99804 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.46829 * 180.02562 * 10 9 7 12 12 N 1.46507 * 109.47020 * 179.97438 * 11 10 9 13 13 C 1.36933 * 119.99847 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00138 * 0.02562 * 13 12 11 15 15 C 1.38819 * 119.99882 * 179.97438 * 13 12 11 16 16 N 1.31620 * 119.99777 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 119.99980 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46838 * 90.00557 * 17 15 13 19 19 H 1.48499 * 109.46982 * 210.00249 * 17 15 13 20 20 H 1.48496 * 109.47239 * 330.00460 * 17 15 13 21 21 C 1.39965 * 118.21861 * 359.50943 * 6 5 4 22 22 C 1.37968 * 119.13541 * 0.48937 * 21 6 5 23 23 N 1.31908 * 120.97683 * 359.74756 * 22 21 6 24 24 H 1.09001 * 109.47308 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46863 * 300.00230 * 1 2 3 26 26 H 1.09000 * 109.46918 * 60.00415 * 1 2 3 27 27 H 1.08998 * 109.46863 * 239.99770 * 2 1 3 28 28 H 1.08998 * 109.46839 * 120.00539 * 2 1 3 29 29 H 1.08002 * 120.52328 * 359.94735 * 5 4 3 30 30 H 0.96997 * 119.99796 * 0.02562 * 9 7 6 31 31 H 1.09004 * 109.46972 * 299.99741 * 10 9 7 32 32 H 1.09001 * 109.47236 * 60.00183 * 10 9 7 33 33 H 1.08996 * 109.46967 * 299.99729 * 11 10 9 34 34 H 1.08995 * 109.47117 * 60.00246 * 11 10 9 35 35 H 0.96997 * 119.99615 * 359.97438 * 12 11 10 36 36 H 0.97000 * 119.99981 * 179.97438 * 16 15 13 37 37 H 1.08000 * 120.43136 * 180.24469 * 21 6 5 38 38 H 1.08001 * 119.51238 * 179.77583 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3516 1.5250 -0.0005 5 6 3.8740 2.8120 0.0000 6 6 5.2598 2.9784 -0.0055 7 6 5.8633 4.3315 -0.0108 8 8 5.1498 5.3151 -0.0109 9 7 7.2038 4.4714 -0.0155 10 6 7.8006 5.8093 -0.0202 11 6 9.3257 5.6874 -0.0256 12 7 9.9226 7.0254 -0.0310 13 6 11.2845 7.1675 -0.0359 14 1 11.9187 6.2933 -0.0362 15 6 11.8501 8.4352 -0.0414 16 7 11.0771 9.5006 -0.0415 17 14 13.7079 8.6291 -0.0474 18 1 14.1961 8.6763 -1.4490 19 1 14.0763 9.8886 0.6477 20 1 14.3281 7.4767 0.6543 21 6 6.0639 1.8328 -0.0007 22 6 5.4635 0.5906 -0.0011 23 7 4.1498 0.4715 -0.0010 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.2183 3.6702 -0.0001 30 1 7.7733 3.6863 -0.0158 31 1 7.4764 6.3486 -0.9103 32 1 7.4823 6.3523 0.8697 33 1 9.6502 5.1480 0.8641 34 1 9.6436 5.1447 -0.9158 35 1 9.3530 7.8105 -0.0310 36 1 11.4723 10.3865 -0.0450 37 1 7.1404 1.9201 -0.0007 38 1 6.0782 -0.2974 -0.0011 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133604682.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:52:55 Heat of formation + Delta-G solvation = -52.904899 kcal Electronic energy + Delta-G solvation = -20231.734039 eV Core-core repulsion = 16880.969747 eV Total energy + Delta-G solvation = -3350.764292 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.95429 -40.67924 -38.91242 -37.37394 -35.63860 -33.92890 -33.18177 -32.87502 -30.95417 -29.54831 -26.46749 -25.25164 -24.41921 -23.79120 -23.04104 -21.79124 -19.91160 -19.26732 -18.38954 -17.47704 -17.35574 -17.01145 -16.75455 -16.63021 -16.45938 -15.46686 -15.41052 -15.21888 -15.01746 -14.85402 -14.80079 -14.61163 -13.46035 -13.35727 -13.11460 -13.06663 -13.01311 -12.67545 -12.53184 -12.47300 -12.07610 -11.87500 -11.74082 -11.51961 -11.11932 -10.98419 -10.75957 -10.26399 -9.62293 -9.05628 -7.95989 -5.27262 -0.45811 0.05468 1.49512 1.51897 1.60115 1.67736 1.70785 2.11747 2.58159 2.72292 3.23013 3.38544 3.41593 3.84548 3.91058 3.92726 4.07914 4.09292 4.14301 4.19591 4.20851 4.45630 4.56970 4.59433 4.70487 4.82645 4.94701 4.94969 4.99192 5.13322 5.18567 5.24533 5.32511 5.50096 6.17009 6.24690 6.35248 6.68999 6.99686 7.31115 8.03176 8.25416 9.27616 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.057249 B = 0.002392 C = 0.002302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.973317 B =11701.174027 C =12159.080000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.321 6.321 4 C 0.311 3.689 5 C -0.153 4.153 6 C -0.058 4.058 7 C 0.555 3.445 8 O -0.573 6.573 9 N -0.695 5.695 10 C 0.126 3.874 11 C 0.148 3.852 12 N -0.748 5.748 13 C -0.246 4.246 14 H 0.085 0.915 15 C -0.079 4.079 16 N -0.971 5.971 17 Si 0.979 3.021 18 H -0.287 1.287 19 H -0.298 1.298 20 H -0.265 1.265 21 C -0.167 4.167 22 C 0.145 3.855 23 N -0.534 5.534 24 H 0.102 0.898 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.138 0.862 30 H 0.420 0.580 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.042 0.958 34 H 0.042 0.958 35 H 0.374 0.626 36 H 0.252 0.748 37 H 0.178 0.822 38 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.494 -25.144 0.140 29.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.013 4.013 3 O -0.229 6.229 4 C 0.132 3.868 5 C -0.175 4.175 6 C -0.069 4.069 7 C 0.342 3.658 8 O -0.452 6.452 9 N -0.348 5.348 10 C 0.001 3.999 11 C 0.021 3.979 12 N -0.391 5.391 13 C -0.378 4.378 14 H 0.103 0.897 15 C -0.271 4.271 16 N -0.621 5.621 17 Si 0.808 3.192 18 H -0.214 1.214 19 H -0.225 1.225 20 H -0.189 1.189 21 C -0.187 4.187 22 C -0.010 4.010 23 N -0.259 5.259 24 H 0.120 0.880 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.156 0.844 30 H 0.259 0.741 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.205 0.795 36 H 0.060 0.940 37 H 0.195 0.805 38 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -16.414 -25.147 0.148 30.030 hybrid contribution 1.171 1.420 -0.024 1.841 sum -15.243 -23.727 0.125 28.202 Atomic orbital electron populations 1.21857 0.91349 1.04331 1.03196 1.22846 0.96092 0.79666 1.02688 1.86248 1.16429 1.32611 1.87600 1.19640 0.84705 0.89363 0.93055 1.21093 0.95001 0.96564 1.04867 1.19980 0.93379 0.93299 1.00234 1.18453 0.82445 0.88625 0.76265 1.90787 1.62128 1.41230 1.51075 1.45540 1.05870 1.09878 1.73471 1.21261 0.93348 0.83653 1.01625 1.20869 0.89468 0.87871 0.99652 1.42426 1.03933 1.02959 1.89797 1.19661 0.83920 0.92660 1.41553 0.89678 1.25684 1.02633 0.95322 1.03469 1.69838 1.35590 0.97497 1.59202 0.85056 0.79684 0.77036 0.77440 1.21363 1.22482 1.18923 1.22554 1.02768 0.91531 1.01881 1.23125 0.88412 0.98540 0.90960 1.67314 1.07922 1.32761 1.17856 0.87951 0.91833 0.91831 0.91335 0.91334 0.84384 0.74143 0.92382 0.92363 0.94038 0.94052 0.79464 0.93965 0.80498 0.77388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 10.28 71.98 0.74 -0.81 16 2 C 0.06 0.92 6.03 71.98 0.43 1.36 16 3 O -0.32 -6.99 10.11 -90.06 -0.91 -7.91 16 4 C 0.31 6.97 7.49 84.80 0.63 7.60 16 5 C -0.15 -3.77 9.61 22.75 0.22 -3.55 16 6 C -0.06 -1.30 5.91 -19.90 -0.12 -1.42 16 7 C 0.56 15.82 7.80 86.88 0.68 16.50 16 8 O -0.57 -21.64 16.44 -3.74 -0.06 -21.70 16 9 N -0.69 -17.22 5.51 -465.66 -2.57 -19.79 16 10 C 0.13 4.11 5.79 86.38 0.50 4.61 16 11 C 0.15 5.34 6.37 86.38 0.55 5.89 16 12 N -0.75 -37.06 5.60 -343.44 -1.92 -38.99 16 13 C -0.25 -13.34 9.99 84.04 0.84 -12.50 16 14 H 0.09 4.29 7.83 -2.91 -0.02 4.27 16 15 C -0.08 -4.47 5.50 84.86 0.47 -4.00 16 16 N -0.97 -59.46 13.06 21.65 0.28 -59.18 16 17 Si 0.98 45.18 29.55 68.60 2.03 47.21 16 18 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 19 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 20 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 21 C -0.17 -2.33 9.61 22.62 0.22 -2.11 16 22 C 0.15 1.85 11.17 84.62 0.94 2.79 16 23 N -0.53 -9.96 9.18 -309.14 -2.84 -12.79 16 24 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.07 0.98 8.10 -2.39 -0.02 0.96 16 28 H 0.07 0.98 8.10 -2.39 -0.02 0.96 16 29 H 0.14 3.72 7.74 -2.91 -0.02 3.70 16 30 H 0.42 7.00 6.61 -92.71 -0.61 6.38 16 31 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.37 20.17 7.67 -92.71 -0.71 19.46 16 36 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 37 H 0.18 1.21 6.53 -2.91 -0.02 1.19 16 38 H 0.21 0.85 8.06 -2.91 -0.02 0.83 16 Total: -1.00 -74.13 332.27 -0.12 -74.25 By element: Atomic # 1 Polarization: 24.78 SS G_CDS: -0.24 Total: 24.55 kcal Atomic # 6 Polarization: 8.25 SS G_CDS: 6.11 Total: 14.36 kcal Atomic # 7 Polarization: -123.70 SS G_CDS: -7.05 Total: -130.75 kcal Atomic # 8 Polarization: -28.64 SS G_CDS: -0.97 Total: -29.61 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -74.13 -0.12 -74.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133604682.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.346 kcal (2) G-P(sol) polarization free energy of solvation -74.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds