Wall clock time and date at job start Tue Mar 31 2020 01:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46504 * 119.99863 * 2 1 4 4 C 1.53001 * 109.47037 * 269.99872 * 3 2 1 5 5 C 1.53002 * 109.47312 * 179.97438 * 4 3 2 6 6 F 1.39899 * 109.47119 * 180.02562 * 5 4 3 7 7 C 1.34778 * 120.00108 * 180.02562 * 2 1 3 8 8 O 1.21280 * 119.99732 * 185.38495 * 7 2 1 9 9 C 1.50696 * 120.00045 * 5.38166 * 7 2 1 10 10 H 1.09006 * 109.47013 * 37.28296 * 9 7 2 11 11 C 1.50693 * 109.47158 * 157.28131 * 9 7 2 12 12 H 1.08001 * 119.99913 * 55.07598 * 11 9 7 13 13 C 1.37883 * 120.00200 * 234.80521 * 11 9 7 14 14 N 1.31506 * 119.99959 * 176.50654 * 13 11 9 15 15 Si 1.86796 * 119.99777 * 356.49670 * 13 11 9 16 16 H 1.48499 * 109.46890 * 84.58007 * 15 13 11 17 17 H 1.48506 * 109.47212 * 204.58022 * 15 13 11 18 18 H 1.48500 * 109.47343 * 324.58491 * 15 13 11 19 19 C 1.50695 * 109.47255 * 277.28497 * 9 7 2 20 20 C 1.38241 * 119.99984 * 298.15339 * 19 9 7 21 21 C 1.38232 * 119.99994 * 179.80857 * 20 19 9 22 22 C 1.38234 * 119.99856 * 0.40252 * 21 20 19 23 23 C 1.38237 * 120.00175 * 359.85148 * 22 21 20 24 24 C 1.38228 * 119.99975 * 359.95697 * 23 22 21 25 25 H 1.09002 * 109.46880 * 268.94069 * 1 2 3 26 26 H 1.09004 * 109.47333 * 28.93632 * 1 2 3 27 27 H 1.08997 * 109.47000 * 148.93864 * 1 2 3 28 28 H 1.09001 * 109.47145 * 29.99996 * 3 2 1 29 29 H 1.08997 * 109.46912 * 150.00316 * 3 2 1 30 30 H 1.09004 * 109.47556 * 300.00486 * 4 3 2 31 31 H 1.09005 * 109.47110 * 60.00193 * 4 3 2 32 32 H 1.09001 * 109.47177 * 300.00311 * 5 4 3 33 33 H 1.09005 * 109.46706 * 60.00152 * 5 4 3 34 34 H 0.97008 * 120.00178 * 179.97438 * 14 13 11 35 35 H 1.07995 * 119.99657 * 359.97438 * 20 19 9 36 36 H 1.07995 * 120.00269 * 180.22925 * 21 20 19 37 37 H 1.08005 * 119.99804 * 179.83292 * 22 21 20 38 38 H 1.08001 * 119.99827 * 179.97438 * 23 22 21 39 39 H 1.08000 * 120.00057 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.2169 3.0358 -1.4426 6 9 3.4496 3.4399 -2.7616 7 6 2.1389 -1.1672 -0.0005 8 8 3.3477 -1.1695 0.0980 9 6 1.3904 -2.4694 -0.1235 10 1 0.5539 -2.3441 -0.8111 11 6 2.3180 -3.5341 -0.6496 12 1 3.2474 -3.7406 -0.1398 13 6 1.9775 -4.2487 -1.7786 14 7 2.8170 -5.1295 -2.2774 15 14 0.3236 -3.9657 -2.5995 16 1 0.4216 -2.8079 -3.5241 17 1 -0.0636 -5.1785 -3.3641 18 1 -0.7022 -3.6857 -1.5628 19 6 0.8708 -2.8799 1.2301 20 6 1.7551 -3.1359 2.2614 21 6 1.2782 -3.5086 3.5042 22 6 -0.0825 -3.6334 3.7134 23 6 -0.9665 -3.3825 2.6807 24 6 -0.4899 -3.0060 1.4391 25 1 -0.3633 -0.0190 1.0275 26 1 -0.3634 0.8994 -0.4972 27 1 -0.3633 -0.8803 -0.5302 28 1 1.6084 2.0284 0.5138 29 1 3.1499 1.1384 0.5138 30 1 3.0415 0.9508 -1.9564 31 1 1.5000 1.8408 -1.9564 32 1 2.6275 3.7953 -0.9289 33 1 4.1694 2.9059 -0.9286 34 1 2.5773 -5.6324 -3.0715 35 1 2.8183 -3.0420 2.0969 36 1 1.9688 -3.7050 4.3109 37 1 -0.4549 -3.9273 4.6837 38 1 -2.0296 -3.4805 2.8441 39 1 -1.1805 -2.8096 0.6323 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133955634.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:40 Heat of formation + Delta-G solvation = -67.412400 kcal Electronic energy + Delta-G solvation = -22075.608579 eV Core-core repulsion = 18704.295233 eV Total energy + Delta-G solvation = -3371.313346 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -47.58701 -39.64139 -38.17312 -35.48328 -33.71038 -32.56501 -31.43748 -30.30589 -27.95379 -26.89474 -25.42248 -23.29678 -22.01733 -21.95117 -20.73246 -18.52306 -17.20114 -16.56217 -16.27715 -16.05812 -15.79849 -15.55967 -14.90747 -14.79484 -14.29427 -14.07622 -13.82868 -13.44981 -12.99637 -12.82974 -12.76023 -12.34347 -12.25486 -12.15515 -11.90850 -11.71028 -11.35947 -11.11295 -11.09088 -11.01876 -10.61224 -10.58000 -10.19267 -10.01298 -9.42148 -8.99505 -8.66467 -8.33703 -8.21460 -7.91467 -6.20820 -4.20746 1.96951 2.01194 3.14604 3.18386 3.24757 3.45665 3.53843 4.25125 4.40650 4.72547 4.76021 4.91404 5.07828 5.11243 5.20887 5.33246 5.41536 5.44741 5.53765 5.61585 5.62733 5.74262 5.82874 5.88371 5.90805 6.08491 6.13213 6.25632 6.27520 6.34907 6.60437 6.69010 6.96855 7.02464 7.10602 7.30879 7.40612 7.62571 7.94432 8.37891 8.92934 9.05481 9.36462 10.91394 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.013361 B = 0.006726 C = 0.005308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.140336 B = 4161.671614 C = 5274.264311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.632 5.632 3 C 0.119 3.881 4 C -0.172 4.172 5 C 0.066 3.934 6 F -0.221 7.221 7 C 0.523 3.477 8 O -0.525 6.525 9 C 0.034 3.966 10 H 0.062 0.938 11 C -0.488 4.488 12 H 0.089 0.911 13 C 0.076 3.924 14 N -0.883 5.883 15 Si 0.865 3.135 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.262 1.262 19 C -0.035 4.035 20 C -0.100 4.100 21 C -0.124 4.124 22 C -0.144 4.144 23 C -0.124 4.124 24 C -0.132 4.132 25 H 0.054 0.946 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.268 0.732 35 H 0.123 0.877 36 H 0.113 0.887 37 H 0.110 0.890 38 H 0.112 0.888 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.788 11.816 6.917 15.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.368 5.368 3 C -0.005 4.005 4 C -0.211 4.211 5 C 0.011 3.989 6 F -0.202 7.202 7 C 0.312 3.688 8 O -0.399 6.399 9 C 0.012 3.988 10 H 0.080 0.920 11 C -0.525 4.525 12 H 0.107 0.893 13 C -0.128 4.128 14 N -0.519 5.519 15 Si 0.692 3.308 16 H -0.198 1.198 17 H -0.208 1.208 18 H -0.187 1.187 19 C -0.036 4.036 20 C -0.118 4.118 21 C -0.142 4.142 22 C -0.162 4.162 23 C -0.142 4.142 24 C -0.151 4.151 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.103 0.897 30 H 0.101 0.899 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.141 0.859 36 H 0.131 0.869 37 H 0.128 0.872 38 H 0.130 0.870 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.068 11.638 6.780 15.210 hybrid contribution -1.006 -0.028 -0.728 1.242 sum -8.074 11.610 6.052 15.382 Atomic orbital electron populations 1.21770 0.80322 1.02579 1.01553 1.48130 1.06536 1.05767 1.76399 1.21147 0.98410 0.85894 0.95004 1.22593 1.01668 0.97220 0.99664 1.21900 1.01443 0.96516 0.79048 1.92757 1.96197 1.92035 1.39231 1.21882 0.88485 0.84868 0.73517 1.90560 1.14660 1.86903 1.47741 1.18448 0.96923 0.91532 0.91909 0.91972 1.20628 1.05309 1.15840 1.10766 0.89327 1.25076 0.96648 0.94831 0.96216 1.69860 1.35262 1.24566 1.22238 0.87029 0.85183 0.78479 0.80089 1.19814 1.20835 1.18660 1.20168 0.92525 0.95880 0.95048 1.21078 1.00338 0.98199 0.92149 1.21066 0.95285 1.00651 0.97164 1.20915 0.93603 1.03094 0.98587 1.20941 0.98805 1.00973 0.93507 1.21029 0.95023 1.02225 0.96789 0.92775 0.91918 0.90980 0.91108 0.89735 0.89943 0.90932 0.90982 0.90565 0.92227 0.85873 0.86940 0.87168 0.87041 0.86936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.10 9.89 59.85 0.59 1.69 16 2 N -0.63 -10.70 2.87 -181.57 -0.52 -11.22 16 3 C 0.12 1.64 5.44 -4.04 -0.02 1.61 16 4 C -0.17 -2.31 5.99 -26.73 -0.16 -2.47 16 5 C 0.07 0.73 7.55 37.16 0.28 1.01 16 6 F -0.22 -3.08 17.36 2.25 0.04 -3.04 16 7 C 0.52 11.40 6.47 -10.99 -0.07 11.33 16 8 O -0.52 -13.19 15.73 5.56 0.09 -13.10 16 9 C 0.03 0.77 1.48 -94.08 -0.14 0.63 16 10 H 0.06 1.36 2.70 -51.93 -0.14 1.22 16 11 C -0.49 -13.55 7.82 -34.44 -0.27 -13.82 16 12 H 0.09 2.77 7.92 -52.49 -0.42 2.35 16 13 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 14 N -0.88 -26.55 13.96 55.43 0.77 -25.78 16 15 Si 0.87 20.31 26.97 -169.99 -4.58 15.72 16 16 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.26 -5.60 6.75 56.52 0.38 -5.22 16 19 C -0.04 -0.72 4.45 -104.62 -0.47 -1.19 16 20 C -0.10 -2.01 8.93 -39.58 -0.35 -2.36 16 21 C -0.12 -2.09 10.05 -39.58 -0.40 -2.49 16 22 C -0.14 -2.20 10.05 -39.58 -0.40 -2.60 16 23 C -0.12 -1.93 10.05 -39.59 -0.40 -2.33 16 24 C -0.13 -2.36 9.50 -39.59 -0.38 -2.73 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.66 8.06 -51.93 -0.42 0.24 16 27 H 0.07 1.05 5.88 -51.93 -0.31 0.74 16 28 H 0.07 0.73 8.07 -51.93 -0.42 0.31 16 29 H 0.08 1.27 7.35 -51.93 -0.38 0.89 16 30 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 35 H 0.12 2.69 7.95 -52.49 -0.42 2.27 16 36 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 37 H 0.11 1.37 8.06 -52.48 -0.42 0.94 16 38 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 39 H 0.11 1.85 7.93 -52.49 -0.42 1.43 16 LS Contribution 330.05 15.07 4.97 4.97 Total: -1.00 -32.52 330.05 -6.96 -39.48 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -5.45 Total: 4.64 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: -2.28 Total: -11.67 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: 0.25 Total: -37.00 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: 0.09 Total: -13.10 kcal Atomic # 9 Polarization: -3.08 SS G_CDS: 0.04 Total: -3.04 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -4.58 Total: 15.72 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.52 -6.96 -39.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133955634.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.936 kcal (2) G-P(sol) polarization free energy of solvation -32.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds