Wall clock time and date at job start Tue Mar 31 2020 01:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46504 * 119.99863 * 2 1 4 4 C 1.53001 * 109.47037 * 269.99872 * 3 2 1 5 5 C 1.53002 * 109.47312 * 179.97438 * 4 3 2 6 6 F 1.39899 * 109.47119 * 180.02562 * 5 4 3 7 7 C 1.34778 * 120.00108 * 180.02562 * 2 1 3 8 8 O 1.21280 * 119.99732 * 185.38495 * 7 2 1 9 9 C 1.50696 * 120.00045 * 5.38166 * 7 2 1 10 10 H 1.09006 * 109.47013 * 37.28296 * 9 7 2 11 11 C 1.50693 * 109.47158 * 157.28131 * 9 7 2 12 12 H 1.08001 * 119.99913 * 55.07598 * 11 9 7 13 13 C 1.37883 * 120.00200 * 234.80521 * 11 9 7 14 14 N 1.31506 * 119.99959 * 176.50654 * 13 11 9 15 15 Si 1.86796 * 119.99777 * 356.49670 * 13 11 9 16 16 H 1.48499 * 109.46890 * 84.58007 * 15 13 11 17 17 H 1.48506 * 109.47212 * 204.58022 * 15 13 11 18 18 H 1.48500 * 109.47343 * 324.58491 * 15 13 11 19 19 C 1.50695 * 109.47255 * 277.28497 * 9 7 2 20 20 C 1.38241 * 119.99984 * 298.15339 * 19 9 7 21 21 C 1.38232 * 119.99994 * 179.80857 * 20 19 9 22 22 C 1.38234 * 119.99856 * 0.40252 * 21 20 19 23 23 C 1.38237 * 120.00175 * 359.85148 * 22 21 20 24 24 C 1.38228 * 119.99975 * 359.95697 * 23 22 21 25 25 H 1.09002 * 109.46880 * 268.94069 * 1 2 3 26 26 H 1.09004 * 109.47333 * 28.93632 * 1 2 3 27 27 H 1.08997 * 109.47000 * 148.93864 * 1 2 3 28 28 H 1.09001 * 109.47145 * 29.99996 * 3 2 1 29 29 H 1.08997 * 109.46912 * 150.00316 * 3 2 1 30 30 H 1.09004 * 109.47556 * 300.00486 * 4 3 2 31 31 H 1.09005 * 109.47110 * 60.00193 * 4 3 2 32 32 H 1.09001 * 109.47177 * 300.00311 * 5 4 3 33 33 H 1.09005 * 109.46706 * 60.00152 * 5 4 3 34 34 H 0.97008 * 120.00178 * 179.97438 * 14 13 11 35 35 H 1.07995 * 119.99657 * 359.97438 * 20 19 9 36 36 H 1.07995 * 120.00269 * 180.22925 * 21 20 19 37 37 H 1.08005 * 119.99804 * 179.83292 * 22 21 20 38 38 H 1.08001 * 119.99827 * 179.97438 * 23 22 21 39 39 H 1.08000 * 120.00057 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.2169 3.0358 -1.4426 6 9 3.4496 3.4399 -2.7616 7 6 2.1389 -1.1672 -0.0005 8 8 3.3477 -1.1695 0.0980 9 6 1.3904 -2.4694 -0.1235 10 1 0.5539 -2.3441 -0.8111 11 6 2.3180 -3.5341 -0.6496 12 1 3.2474 -3.7406 -0.1398 13 6 1.9775 -4.2487 -1.7786 14 7 2.8170 -5.1295 -2.2774 15 14 0.3236 -3.9657 -2.5995 16 1 0.4216 -2.8079 -3.5241 17 1 -0.0636 -5.1785 -3.3641 18 1 -0.7022 -3.6857 -1.5628 19 6 0.8708 -2.8799 1.2301 20 6 1.7551 -3.1359 2.2614 21 6 1.2782 -3.5086 3.5042 22 6 -0.0825 -3.6334 3.7134 23 6 -0.9665 -3.3825 2.6807 24 6 -0.4899 -3.0060 1.4391 25 1 -0.3633 -0.0190 1.0275 26 1 -0.3634 0.8994 -0.4972 27 1 -0.3633 -0.8803 -0.5302 28 1 1.6084 2.0284 0.5138 29 1 3.1499 1.1384 0.5138 30 1 3.0415 0.9508 -1.9564 31 1 1.5000 1.8408 -1.9564 32 1 2.6275 3.7953 -0.9289 33 1 4.1694 2.9059 -0.9286 34 1 2.5773 -5.6324 -3.0715 35 1 2.8183 -3.0420 2.0969 36 1 1.9688 -3.7050 4.3109 37 1 -0.4549 -3.9273 4.6837 38 1 -2.0296 -3.4805 2.8441 39 1 -1.1805 -2.8096 0.6323 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133955634.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:39 Heat of formation + Delta-G solvation = -88.017341 kcal Electronic energy + Delta-G solvation = -22076.502077 eV Core-core repulsion = 18704.295233 eV Total energy + Delta-G solvation = -3372.206844 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.59759 -41.19465 -39.57424 -36.93183 -35.51293 -34.04216 -33.02110 -31.65781 -29.57085 -28.01529 -26.89565 -24.94254 -23.38232 -23.12366 -22.10937 -20.06079 -19.10704 -17.93836 -17.64484 -17.38709 -17.07925 -16.71492 -16.39049 -16.22481 -15.71057 -15.35319 -15.22944 -14.85291 -14.61406 -14.21661 -14.18164 -13.90450 -13.75049 -13.44475 -13.15894 -13.02012 -12.85615 -12.76391 -12.35181 -12.13057 -12.05883 -11.89086 -11.69673 -11.57696 -11.40499 -10.87534 -10.56232 -9.69412 -9.59138 -9.36835 -8.34975 -6.41707 0.60865 0.63843 1.26280 1.31684 1.40975 1.84102 2.15784 2.27676 2.95145 3.11833 3.70827 3.76191 3.94152 4.00927 4.02013 4.20422 4.22787 4.30006 4.33972 4.40559 4.45909 4.49748 4.56276 4.66339 4.81523 4.83563 4.88656 4.93955 4.97732 5.17815 5.21276 5.29103 5.39525 5.69680 5.72530 5.73208 5.91519 6.15959 6.27822 6.48995 6.70046 7.19484 7.43186 8.82350 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.013361 B = 0.006726 C = 0.005308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.140336 B = 4161.671614 C = 5274.264311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.626 5.626 3 C 0.117 3.883 4 C -0.167 4.167 5 C 0.067 3.933 6 F -0.238 7.238 7 C 0.517 3.483 8 O -0.580 6.580 9 C 0.037 3.963 10 H 0.077 0.923 11 C -0.495 4.495 12 H 0.023 0.977 13 C 0.007 3.993 14 N -0.944 5.944 15 Si 0.935 3.065 16 H -0.263 1.263 17 H -0.282 1.282 18 H -0.219 1.219 19 C -0.060 4.060 20 C -0.131 4.131 21 C -0.126 4.126 22 C -0.132 4.132 23 C -0.113 4.113 24 C -0.134 4.134 25 H 0.072 0.928 26 H 0.103 0.897 27 H 0.063 0.937 28 H 0.123 0.877 29 H 0.063 0.937 30 H 0.034 0.966 31 H 0.086 0.914 32 H 0.115 0.885 33 H 0.080 0.920 34 H 0.269 0.731 35 H 0.080 0.920 36 H 0.131 0.869 37 H 0.152 0.848 38 H 0.156 0.844 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.908 14.013 8.506 20.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.359 5.359 3 C -0.006 4.006 4 C -0.206 4.206 5 C 0.012 3.988 6 F -0.219 7.219 7 C 0.307 3.693 8 O -0.459 6.459 9 C 0.016 3.984 10 H 0.095 0.905 11 C -0.533 4.533 12 H 0.042 0.958 13 C -0.190 4.190 14 N -0.583 5.583 15 Si 0.756 3.244 16 H -0.188 1.188 17 H -0.207 1.207 18 H -0.142 1.142 19 C -0.061 4.061 20 C -0.150 4.150 21 C -0.144 4.144 22 C -0.150 4.150 23 C -0.130 4.130 24 C -0.152 4.152 25 H 0.090 0.910 26 H 0.121 0.879 27 H 0.082 0.918 28 H 0.141 0.859 29 H 0.081 0.919 30 H 0.053 0.947 31 H 0.105 0.895 32 H 0.133 0.867 33 H 0.098 0.902 34 H 0.077 0.923 35 H 0.098 0.902 36 H 0.149 0.851 37 H 0.169 0.831 38 H 0.174 0.826 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.236 13.892 8.401 20.330 hybrid contribution 0.648 -0.671 -1.050 1.405 sum -11.588 13.221 7.351 19.056 Atomic orbital electron populations 1.22104 0.77545 1.04257 1.03200 1.48090 1.08370 1.05247 1.74227 1.21388 0.98255 0.85424 0.95531 1.22508 1.01883 0.97264 0.98926 1.22055 1.02176 0.96218 0.78368 1.92724 1.96339 1.92079 1.40768 1.21640 0.87772 0.86370 0.73522 1.90532 1.16883 1.87853 1.50599 1.18299 0.95980 0.90472 0.93666 0.90514 1.20703 1.04262 1.17610 1.10731 0.95812 1.26137 1.01613 0.94357 0.96893 1.70057 1.38204 1.26707 1.23348 0.85927 0.80113 0.78593 0.79747 1.18813 1.20734 1.14176 1.19970 0.94218 0.98168 0.93744 1.20947 0.98511 1.01100 0.94426 1.21305 0.97157 0.99924 0.96045 1.21400 0.92326 1.00771 1.00459 1.21433 1.01057 0.98442 0.92088 1.21257 0.93471 1.01828 0.98690 0.90966 0.87854 0.91826 0.85946 0.91860 0.94712 0.89529 0.86659 0.90173 0.92251 0.90169 0.85116 0.83063 0.82644 0.84911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.63 9.89 127.77 1.26 2.90 16 2 N -0.63 -20.49 2.87 -846.75 -2.43 -22.93 16 3 C 0.12 3.02 5.44 86.38 0.47 3.49 16 4 C -0.17 -4.31 5.99 30.60 0.18 -4.12 16 5 C 0.07 1.35 7.55 71.98 0.54 1.89 16 6 F -0.24 -6.36 17.36 44.97 0.78 -5.58 16 7 C 0.52 23.58 6.47 87.66 0.57 24.15 16 8 O -0.58 -31.88 15.73 -3.03 -0.05 -31.93 16 9 C 0.04 1.75 1.48 -13.04 -0.02 1.73 16 10 H 0.08 3.27 2.70 -2.38 -0.01 3.26 16 11 C -0.50 -29.67 7.82 25.60 0.20 -29.47 16 12 H 0.02 1.66 7.92 -2.91 -0.02 1.64 16 13 C 0.01 0.44 5.47 84.66 0.46 0.91 16 14 N -0.94 -60.80 13.96 21.45 0.30 -60.50 16 15 Si 0.93 42.02 26.97 68.60 1.85 43.87 16 16 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 17 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 18 H -0.22 -8.26 6.75 99.48 0.67 -7.59 16 19 C -0.06 -2.47 4.45 -19.87 -0.09 -2.56 16 20 C -0.13 -5.55 8.93 22.27 0.20 -5.35 16 21 C -0.13 -4.14 10.05 22.27 0.22 -3.91 16 22 C -0.13 -3.45 10.05 22.27 0.22 -3.23 16 23 C -0.11 -2.89 10.05 22.27 0.22 -2.67 16 24 C -0.13 -4.30 9.50 22.27 0.21 -4.09 16 25 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.10 1.58 8.06 -2.39 -0.02 1.56 16 27 H 0.06 1.60 5.88 -2.39 -0.01 1.59 16 28 H 0.12 1.96 8.07 -2.39 -0.02 1.94 16 29 H 0.06 1.93 7.35 -2.39 -0.02 1.91 16 30 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 31 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 32 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 34 H 0.27 16.01 8.31 -92.70 -0.77 15.24 16 35 H 0.08 3.97 7.95 -2.91 -0.02 3.94 16 36 H 0.13 3.66 8.06 -2.91 -0.02 3.63 16 37 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 38 H 0.16 2.72 8.06 -2.91 -0.02 2.70 16 39 H 0.13 3.66 7.93 -2.91 -0.02 3.64 16 Total: -1.00 -82.29 330.05 6.12 -76.17 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: 1.00 Total: 21.23 kcal Atomic # 6 Polarization: -25.01 SS G_CDS: 4.66 Total: -20.34 kcal Atomic # 7 Polarization: -81.30 SS G_CDS: -2.13 Total: -83.43 kcal Atomic # 8 Polarization: -31.88 SS G_CDS: -0.05 Total: -31.93 kcal Atomic # 9 Polarization: -6.36 SS G_CDS: 0.78 Total: -5.58 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 1.85 Total: 43.87 kcal Total: -82.29 6.12 -76.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133955634.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.844 kcal (2) G-P(sol) polarization free energy of solvation -82.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds