Wall clock time and date at job start Tue Mar 31 2020 00:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45197 * 109.47064 * 2 1 4 4 C 1.34729 * 117.00224 * 179.97438 * 3 2 1 5 5 O 1.21487 * 119.99944 * 359.97438 * 4 3 2 6 6 C 1.47583 * 120.00159 * 179.97438 * 4 3 2 7 7 N 1.31854 * 126.52191 * 359.97172 * 6 4 3 8 8 N 1.28474 * 110.06099 * 180.02562 * 7 6 4 9 9 H 0.97000 * 124.87680 * 179.73482 * 8 7 6 10 10 C 1.35041 * 110.24212 * 0.02562 * 8 7 6 11 11 C 1.35349 * 107.24269 * 359.97438 * 10 8 7 12 12 C 1.50700 * 127.25226 * 180.02562 * 11 10 8 13 13 N 1.46896 * 109.46913 * 259.96131 * 12 11 10 14 14 C 1.47487 * 110.99515 * 265.96358 * 13 12 11 15 15 C 1.53509 * 87.93274 * 221.29724 * 14 13 12 16 16 C 1.50700 * 114.34253 * 139.68401 * 15 14 13 17 17 H 1.07997 * 120.00319 * 266.08217 * 16 15 14 18 18 C 1.37878 * 119.99539 * 86.08027 * 16 15 14 19 19 N 1.31516 * 120.00434 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99571 * 180.02562 * 18 16 15 21 21 H 1.48490 * 109.47386 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.46925 * 120.00178 * 20 18 16 23 23 H 1.48504 * 109.46692 * 239.99557 * 20 18 16 24 24 C 1.47483 * 110.99901 * 169.99958 * 13 12 11 25 25 H 1.09005 * 109.46616 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47690 * 300.00119 * 1 2 3 27 27 H 1.09004 * 109.46788 * 60.00661 * 1 2 3 28 28 H 1.08999 * 109.47307 * 239.99508 * 2 1 3 29 29 H 1.09004 * 109.46788 * 119.99339 * 2 1 3 30 30 H 1.07999 * 126.38050 * 180.02562 * 10 8 7 31 31 H 1.09001 * 109.46879 * 19.95744 * 12 11 10 32 32 H 1.08992 * 109.47282 * 139.95477 * 12 11 10 33 33 H 1.08994 * 113.48113 * 336.07027 * 14 13 12 34 34 H 1.08999 * 113.47170 * 106.53457 * 14 13 12 35 35 H 1.08993 * 114.17543 * 272.38039 * 15 14 13 36 36 H 0.96998 * 119.99617 * 180.02562 * 19 18 16 37 37 H 1.08998 * 113.47436 * 253.46871 * 24 13 12 38 38 H 1.09003 * 113.47849 * 23.87330 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3496 1.5455 0.0005 5 8 4.0897 0.5821 0.0015 6 6 3.9137 2.9093 0.0000 7 7 3.2344 4.0394 -0.0015 8 7 4.0417 5.0388 -0.0021 9 1 3.7713 5.9703 -0.0069 10 6 5.3210 4.6061 -0.0015 11 6 5.2868 3.2531 0.0001 12 6 6.4629 2.3109 0.0018 13 7 6.6948 1.8148 -1.3613 14 6 6.0073 0.5283 -1.5795 15 6 7.2577 0.0511 -2.3314 16 6 7.6450 -1.3776 -2.0487 17 1 8.3687 -1.5986 -1.2782 18 6 7.0752 -2.4026 -2.7739 19 7 6.1935 -2.1336 -3.7119 20 14 7.5548 -4.1736 -2.4231 21 1 8.5577 -4.2074 -1.3286 22 1 6.3505 -4.9411 -2.0155 23 1 8.1376 -4.7803 -3.6469 24 6 7.9722 1.0827 -1.4471 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 6.2064 5.2245 -0.0014 31 1 7.3502 2.8380 0.3524 32 1 6.2543 1.4705 0.6638 33 1 5.8167 -0.0238 -0.6593 34 1 5.1243 0.6100 -2.2134 35 1 7.2603 0.2956 -3.3935 36 1 5.7925 -2.8548 -4.2217 37 1 8.7545 1.6341 -1.9687 38 1 8.3066 0.6793 -0.4913 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001138851954.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:46 Heat of formation + Delta-G solvation = 32.410861 kcal Electronic energy + Delta-G solvation = -22137.280116 eV Core-core repulsion = 18790.215393 eV Total energy + Delta-G solvation = -3347.064723 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.62201 -39.81614 -38.63971 -36.23304 -33.13337 -32.19453 -31.79087 -30.94767 -28.54184 -25.59271 -24.93019 -24.55359 -22.62089 -22.52037 -20.64521 -19.94918 -18.43373 -18.09358 -17.25963 -16.54480 -16.33140 -16.03480 -15.40330 -14.64339 -14.34270 -14.04340 -13.76987 -13.69764 -13.47021 -13.16488 -12.64077 -12.32518 -11.89711 -11.79796 -11.60821 -11.47864 -11.13115 -10.90287 -10.76653 -10.45423 -10.29755 -10.26661 -10.03554 -9.56245 -9.36106 -9.30113 -8.75162 -8.65281 -8.25046 -7.77378 -5.92515 -3.95333 1.53581 2.16269 2.62091 3.12226 3.35455 3.41273 3.43058 3.47149 4.50379 4.52343 4.84883 5.05995 5.07970 5.19188 5.28854 5.37206 5.43233 5.44576 5.63829 5.76843 5.87340 5.97225 6.02174 6.19344 6.33437 6.38284 6.52017 6.64039 6.75444 6.89800 6.95515 7.05131 7.40261 7.48365 7.78935 7.87844 8.05396 8.23106 8.29905 8.54222 9.06818 9.68068 11.17443 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.015026 B = 0.006014 C = 0.004518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.001611 B = 4655.010951 C = 6195.542509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.061 3.939 3 O -0.351 6.351 4 C 0.540 3.460 5 O -0.465 6.465 6 C 0.010 3.990 7 N -0.241 5.241 8 N -0.382 5.382 9 H 0.446 0.554 10 C -0.014 4.014 11 C -0.112 4.112 12 C 0.089 3.911 13 N -0.484 5.484 14 C 0.024 3.976 15 C 0.033 3.967 16 C -0.509 4.509 17 H 0.057 0.943 18 C 0.066 3.934 19 N -0.887 5.887 20 Si 0.888 3.112 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.284 1.284 24 C -0.004 4.004 25 H 0.078 0.922 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.186 0.814 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.049 0.951 35 H 0.059 0.941 36 H 0.259 0.741 37 H 0.059 0.941 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.228 12.554 9.137 17.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.013 4.013 3 O -0.268 6.268 4 C 0.381 3.619 5 O -0.347 6.347 6 C -0.149 4.149 7 N -0.079 5.079 8 N -0.097 5.097 9 H 0.290 0.710 10 C -0.158 4.158 11 C -0.122 4.122 12 C -0.041 4.041 13 N -0.207 5.207 14 C -0.104 4.104 15 C 0.014 3.986 16 C -0.548 4.548 17 H 0.075 0.925 18 C -0.136 4.136 19 N -0.525 5.525 20 Si 0.716 3.284 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.132 4.132 25 H 0.097 0.903 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.203 0.797 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.097 0.903 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.348 13.072 8.602 17.736 hybrid contribution 0.904 -1.394 0.696 1.801 sum -7.444 11.678 9.298 16.680 Atomic orbital electron populations 1.21780 0.92895 1.02735 1.03230 1.23047 0.95013 0.80058 1.03156 1.86565 1.23612 1.32179 1.84462 1.19622 0.80680 0.87508 0.74070 1.91013 1.59493 1.40741 1.43501 1.20689 0.91703 0.90141 1.12321 1.73647 1.21811 0.94550 1.17881 1.43240 1.04192 1.08856 1.53388 0.70978 1.22653 0.88994 0.95333 1.08807 1.20283 0.93616 0.93327 1.04965 1.20963 0.92713 0.96196 0.94231 1.68888 1.06892 1.24208 1.20661 1.24185 0.98738 0.86959 1.00562 1.20179 0.90815 0.92556 0.95055 1.21057 1.24290 0.90600 1.18813 0.92507 1.24997 0.94925 0.98898 0.94780 1.69994 1.28152 1.31962 1.22378 0.86599 0.78339 0.85315 0.78104 1.19760 1.21080 1.21068 1.23973 0.92765 0.96247 1.00263 0.90321 0.91785 0.91549 0.90588 0.91214 0.79711 0.91203 0.92105 0.90280 0.93254 0.92300 0.93153 0.92255 0.92880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 10.29 37.16 0.38 -1.19 16 2 C 0.06 0.87 6.20 37.16 0.23 1.10 16 3 O -0.35 -5.94 10.23 -40.57 -0.42 -6.36 16 4 C 0.54 10.21 7.97 34.54 0.28 10.48 16 5 O -0.46 -9.92 10.73 -19.26 -0.21 -10.13 16 6 C 0.01 0.18 7.17 -82.79 -0.59 -0.41 16 7 N -0.24 -3.62 12.24 33.41 0.41 -3.21 16 8 N -0.38 -4.12 6.83 30.47 0.21 -3.91 16 9 H 0.45 2.69 8.96 -190.44 -1.71 0.99 16 10 C -0.01 -0.16 11.97 -17.17 -0.21 -0.37 16 11 C -0.11 -1.82 5.83 -104.39 -0.61 -2.43 16 12 C 0.09 1.58 4.89 -4.98 -0.02 1.56 16 13 N -0.48 -10.38 6.32 -246.09 -1.55 -11.94 16 14 C 0.02 0.60 5.28 -7.54 -0.04 0.56 16 15 C 0.03 0.88 3.76 -91.24 -0.34 0.53 16 16 C -0.51 -14.48 8.83 -34.44 -0.30 -14.78 16 17 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 18 C 0.07 1.90 5.46 -17.82 -0.10 1.81 16 19 N -0.89 -26.69 13.26 55.43 0.74 -25.96 16 20 Si 0.89 21.83 29.54 -169.99 -5.02 16.80 16 21 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 24 C 0.00 -0.08 7.24 -7.54 -0.05 -0.14 16 25 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.19 1.44 8.06 -52.49 -0.42 1.02 16 31 H 0.07 1.06 8.08 -51.93 -0.42 0.64 16 32 H 0.06 1.19 6.53 -51.93 -0.34 0.85 16 33 H 0.08 2.08 5.36 -51.93 -0.28 1.80 16 34 H 0.05 1.34 7.95 -51.93 -0.41 0.93 16 35 H 0.06 1.71 8.11 -51.93 -0.42 1.29 16 36 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 37 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.05 1.13 7.87 -51.93 -0.41 0.73 16 LS Contribution 321.23 15.07 4.84 4.84 Total: -1.00 -34.24 321.23 -8.88 -43.11 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -6.49 Total: 0.01 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -1.38 Total: -3.28 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: -0.20 Total: -45.01 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -0.62 Total: -16.48 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -34.24 -8.88 -43.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138851954.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.523 kcal (2) G-P(sol) polarization free energy of solvation -34.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds