Wall clock time and date at job start Tue Mar 31 2020 00:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45197 * 109.47064 * 2 1 4 4 C 1.34729 * 117.00224 * 179.97438 * 3 2 1 5 5 O 1.21487 * 119.99944 * 359.97438 * 4 3 2 6 6 C 1.47583 * 120.00159 * 179.97438 * 4 3 2 7 7 N 1.31854 * 126.52191 * 359.97172 * 6 4 3 8 8 N 1.28474 * 110.06099 * 180.02562 * 7 6 4 9 9 H 0.97000 * 124.87680 * 179.73482 * 8 7 6 10 10 C 1.35041 * 110.24212 * 0.02562 * 8 7 6 11 11 C 1.35349 * 107.24269 * 359.97438 * 10 8 7 12 12 C 1.50700 * 127.25226 * 180.02562 * 11 10 8 13 13 N 1.46896 * 109.46913 * 259.96131 * 12 11 10 14 14 C 1.47487 * 110.99515 * 265.96358 * 13 12 11 15 15 C 1.53509 * 87.93274 * 221.29724 * 14 13 12 16 16 C 1.50700 * 114.34253 * 139.68401 * 15 14 13 17 17 H 1.07997 * 120.00319 * 266.08217 * 16 15 14 18 18 C 1.37878 * 119.99539 * 86.08027 * 16 15 14 19 19 N 1.31516 * 120.00434 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99571 * 180.02562 * 18 16 15 21 21 H 1.48490 * 109.47386 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.46925 * 120.00178 * 20 18 16 23 23 H 1.48504 * 109.46692 * 239.99557 * 20 18 16 24 24 C 1.47483 * 110.99901 * 169.99958 * 13 12 11 25 25 H 1.09005 * 109.46616 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47690 * 300.00119 * 1 2 3 27 27 H 1.09004 * 109.46788 * 60.00661 * 1 2 3 28 28 H 1.08999 * 109.47307 * 239.99508 * 2 1 3 29 29 H 1.09004 * 109.46788 * 119.99339 * 2 1 3 30 30 H 1.07999 * 126.38050 * 180.02562 * 10 8 7 31 31 H 1.09001 * 109.46879 * 19.95744 * 12 11 10 32 32 H 1.08992 * 109.47282 * 139.95477 * 12 11 10 33 33 H 1.08994 * 113.48113 * 336.07027 * 14 13 12 34 34 H 1.08999 * 113.47170 * 106.53457 * 14 13 12 35 35 H 1.08993 * 114.17543 * 272.38039 * 15 14 13 36 36 H 0.96998 * 119.99617 * 180.02562 * 19 18 16 37 37 H 1.08998 * 113.47436 * 253.46871 * 24 13 12 38 38 H 1.09003 * 113.47849 * 23.87330 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3496 1.5455 0.0005 5 8 4.0897 0.5821 0.0015 6 6 3.9137 2.9093 0.0000 7 7 3.2344 4.0394 -0.0015 8 7 4.0417 5.0388 -0.0021 9 1 3.7713 5.9703 -0.0069 10 6 5.3210 4.6061 -0.0015 11 6 5.2868 3.2531 0.0001 12 6 6.4629 2.3109 0.0018 13 7 6.6948 1.8148 -1.3613 14 6 6.0073 0.5283 -1.5795 15 6 7.2577 0.0511 -2.3314 16 6 7.6450 -1.3776 -2.0487 17 1 8.3687 -1.5986 -1.2782 18 6 7.0752 -2.4026 -2.7739 19 7 6.1935 -2.1336 -3.7119 20 14 7.5548 -4.1736 -2.4231 21 1 8.5577 -4.2074 -1.3286 22 1 6.3505 -4.9411 -2.0155 23 1 8.1376 -4.7803 -3.6469 24 6 7.9722 1.0827 -1.4471 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 6.2064 5.2245 -0.0014 31 1 7.3502 2.8380 0.3524 32 1 6.2543 1.4705 0.6638 33 1 5.8167 -0.0238 -0.6593 34 1 5.1243 0.6100 -2.2134 35 1 7.2603 0.2956 -3.3935 36 1 5.7925 -2.8548 -4.2217 37 1 8.7545 1.6341 -1.9687 38 1 8.3066 0.6793 -0.4913 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001138851954.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:45 Heat of formation + Delta-G solvation = 6.249228 kcal Electronic energy + Delta-G solvation = -22138.414570 eV Core-core repulsion = 18790.215393 eV Total energy + Delta-G solvation = -3348.199177 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.72078 -41.21508 -40.44752 -37.64173 -34.93213 -33.78443 -32.99775 -32.04054 -30.20269 -27.42206 -26.45922 -26.19746 -24.25928 -23.71406 -21.91438 -21.21687 -20.37981 -19.21954 -18.56205 -18.48499 -17.74253 -17.39070 -16.71799 -16.46776 -16.14833 -15.60543 -15.42515 -14.93797 -14.76516 -14.41051 -13.90191 -13.81446 -13.63305 -13.30591 -13.06621 -12.89687 -12.84294 -12.55724 -12.44365 -12.23019 -11.83261 -11.65345 -11.54981 -11.41106 -11.19865 -10.80882 -10.52732 -10.39596 -9.97266 -9.55264 -8.12434 -6.22904 0.25470 1.10181 1.40734 1.41491 1.46840 1.54197 2.04951 2.18925 2.43744 3.17043 3.30334 3.58361 3.81892 3.96999 4.03039 4.09174 4.27193 4.32184 4.36622 4.44155 4.57723 4.75398 4.80139 4.86934 4.89333 4.92153 4.98419 5.04853 5.12207 5.17402 5.30773 5.47310 5.62450 5.68946 5.89736 6.12465 6.34192 6.49017 6.65536 6.86269 6.90443 7.44472 8.98158 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.015026 B = 0.006014 C = 0.004518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.001611 B = 4655.010951 C = 6195.542509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.053 3.947 3 O -0.353 6.353 4 C 0.533 3.467 5 O -0.503 6.503 6 C -0.024 4.024 7 N -0.251 5.251 8 N -0.353 5.353 9 H 0.469 0.531 10 C 0.028 3.972 11 C -0.153 4.153 12 C 0.093 3.907 13 N -0.479 5.479 14 C 0.048 3.952 15 C 0.010 3.990 16 C -0.524 4.524 17 H 0.060 0.940 18 C 0.010 3.990 19 N -0.926 5.926 20 Si 0.959 3.041 21 H -0.261 1.261 22 H -0.283 1.283 23 H -0.277 1.277 24 C 0.014 3.986 25 H 0.101 0.899 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.237 0.763 31 H 0.107 0.893 32 H 0.038 0.962 33 H 0.063 0.937 34 H 0.010 0.990 35 H 0.024 0.976 36 H 0.260 0.740 37 H 0.082 0.918 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.543 14.486 10.487 19.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.020 4.020 3 O -0.270 6.270 4 C 0.376 3.624 5 O -0.389 6.389 6 C -0.181 4.181 7 N -0.090 5.090 8 N -0.071 5.071 9 H 0.319 0.681 10 C -0.118 4.118 11 C -0.163 4.163 12 C -0.036 4.036 13 N -0.201 5.201 14 C -0.081 4.081 15 C -0.009 4.009 16 C -0.562 4.562 17 H 0.078 0.922 18 C -0.189 4.189 19 N -0.565 5.565 20 Si 0.784 3.216 21 H -0.185 1.185 22 H -0.209 1.209 23 H -0.202 1.202 24 C -0.114 4.114 25 H 0.120 0.880 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.253 0.747 31 H 0.125 0.875 32 H 0.056 0.944 33 H 0.081 0.919 34 H 0.029 0.971 35 H 0.042 0.958 36 H 0.069 0.931 37 H 0.100 0.900 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.688 15.048 9.965 19.618 hybrid contribution 0.645 -1.845 0.289 1.976 sum -7.042 13.203 10.254 18.140 Atomic orbital electron populations 1.21793 0.89546 1.04447 1.03834 1.23301 0.97594 0.79006 1.02148 1.86575 1.22879 1.33519 1.84019 1.20125 0.80947 0.88225 0.73062 1.90974 1.60282 1.42099 1.45582 1.20693 0.92739 0.89964 1.14693 1.73581 1.22525 0.94683 1.18252 1.43379 1.03800 1.09375 1.50581 0.68080 1.23240 0.90323 0.93891 1.04322 1.20302 0.92424 0.95147 1.08468 1.20904 0.95200 0.96226 0.91277 1.68775 1.05584 1.21898 1.23823 1.23712 0.96604 0.89032 0.98785 1.20175 0.93353 0.93422 0.93984 1.21411 1.24194 0.91851 1.18791 0.92154 1.25883 0.94822 1.03583 0.94567 1.70137 1.29455 1.33371 1.23577 0.85497 0.78149 0.79583 0.78390 1.18510 1.20929 1.20230 1.23776 0.93228 0.94827 0.99575 0.88025 0.90532 0.91497 0.92863 0.91068 0.74691 0.87468 0.94409 0.91856 0.97083 0.95790 0.93093 0.89993 0.91976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 10.29 71.98 0.74 -2.14 16 2 C 0.05 1.60 6.20 71.98 0.45 2.05 16 3 O -0.35 -12.53 10.23 -56.40 -0.58 -13.10 16 4 C 0.53 21.24 7.97 70.29 0.56 21.80 16 5 O -0.50 -23.08 10.73 19.88 0.21 -22.86 16 6 C -0.02 -0.84 7.17 42.42 0.30 -0.53 16 7 N -0.25 -7.13 12.24 -48.22 -0.59 -7.72 16 8 N -0.35 -6.31 6.83 -57.52 -0.39 -6.70 16 9 H 0.47 3.54 8.96 -219.99 -1.97 1.57 16 10 C 0.03 0.52 11.97 83.53 1.00 1.52 16 11 C -0.15 -4.71 5.83 -19.72 -0.12 -4.82 16 12 C 0.09 3.22 4.89 85.56 0.42 3.63 16 13 N -0.48 -20.49 6.32 -932.49 -5.89 -26.38 16 14 C 0.05 2.51 5.28 83.57 0.44 2.96 16 15 C 0.01 0.54 3.76 -11.20 -0.04 0.50 16 16 C -0.52 -30.55 8.83 25.60 0.23 -30.32 16 17 H 0.06 3.38 7.81 -2.91 -0.02 3.36 16 18 C 0.01 0.58 5.46 84.65 0.46 1.05 16 19 N -0.93 -57.96 13.26 21.45 0.28 -57.67 16 20 Si 0.96 45.58 29.54 68.60 2.03 47.61 16 21 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 22 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 23 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 24 C 0.01 0.63 7.24 83.57 0.61 1.23 16 25 H 0.10 1.64 8.14 -2.38 -0.02 1.62 16 26 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 28 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 30 H 0.24 2.03 8.06 -2.91 -0.02 2.01 16 31 H 0.11 2.87 8.08 -2.39 -0.02 2.85 16 32 H 0.04 1.49 6.53 -2.39 -0.02 1.47 16 33 H 0.06 3.53 5.36 -2.39 -0.01 3.52 16 34 H 0.01 0.62 7.95 -2.39 -0.02 0.60 16 35 H 0.02 1.46 8.11 -2.39 -0.02 1.44 16 36 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 37 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 38 H 0.06 2.58 7.87 -2.39 -0.02 2.56 16 Total: -1.00 -79.53 321.23 -0.77 -80.30 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -0.89 Total: 9.62 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: 5.05 Total: -3.09 kcal Atomic # 7 Polarization: -91.89 SS G_CDS: -6.59 Total: -98.48 kcal Atomic # 8 Polarization: -35.60 SS G_CDS: -0.36 Total: -35.97 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -79.53 -0.77 -80.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138851954.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.546 kcal (2) G-P(sol) polarization free energy of solvation -79.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds