Wall clock time and date at job start Tue Mar 31 2020 01:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34945 * 126.03842 * 2 1 4 4 C 1.35310 * 107.74667 * 179.75735 * 3 2 1 5 5 C 1.50698 * 126.04027 * 180.27398 * 4 3 2 6 6 H 1.09003 * 109.47169 * 21.69217 * 5 4 3 7 7 O 1.42903 * 109.47370 * 141.68712 * 5 4 3 8 8 C 1.50698 * 109.47605 * 261.68874 * 5 4 3 9 9 O 1.21280 * 120.00003 * 246.52550 * 8 5 4 10 10 N 1.34774 * 119.99836 * 66.51528 * 8 5 4 11 11 C 1.46501 * 119.99923 * 184.46749 * 10 8 5 12 12 C 1.53003 * 109.46953 * 175.21659 * 11 10 8 13 13 C 1.50697 * 115.54930 * 65.19948 * 12 11 10 14 14 H 1.08006 * 119.99735 * 270.75908 * 13 12 11 15 15 C 1.37874 * 120.00689 * 90.75915 * 13 12 11 16 16 N 1.31508 * 120.00957 * 181.64913 * 15 13 12 17 17 Si 1.86804 * 119.99530 * 1.64942 * 15 13 12 18 18 H 1.48496 * 109.47417 * 93.03791 * 17 15 13 19 19 H 1.48504 * 109.47169 * 213.04016 * 17 15 13 20 20 H 1.48500 * 109.47148 * 333.03456 * 17 15 13 21 21 C 1.52998 * 117.50099 * 279.52558 * 12 11 10 22 22 C 1.52995 * 117.49864 * 210.86323 * 12 11 10 23 23 C 1.39866 * 107.92168 * 0.39097 * 4 3 2 24 24 N 1.30839 * 108.20283 * 359.60317 * 23 4 3 25 25 H 1.08997 * 109.46606 * 269.97356 * 1 2 3 26 26 H 1.09001 * 109.46967 * 29.97205 * 1 2 3 27 27 H 1.08999 * 109.46816 * 149.97551 * 1 2 3 28 28 H 1.08007 * 126.12642 * 359.97438 * 3 2 1 29 29 H 0.96702 * 113.99792 * 60.00010 * 7 5 4 30 30 H 0.97000 * 120.00271 * 4.46712 * 10 8 5 31 31 H 1.08999 * 109.47325 * 295.21329 * 11 10 8 32 32 H 1.08997 * 109.47085 * 55.21855 * 11 10 8 33 33 H 0.96992 * 120.00783 * 180.02562 * 16 15 13 34 34 H 1.08999 * 117.49780 * 0.02562 * 21 12 11 35 35 H 1.08998 * 117.50024 * 145.01900 * 21 12 11 36 36 H 1.09004 * 117.50280 * 214.97814 * 22 12 11 37 37 H 1.09001 * 117.49941 * 359.97438 * 22 12 11 38 38 H 1.08003 * 125.90452 * 179.86537 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6665 0.0055 5 6 4.7680 1.5452 0.0133 6 1 4.5045 2.5321 0.3939 7 8 5.7673 0.9625 0.8523 8 6 5.3028 1.6742 -1.3897 9 8 6.3812 1.1975 -1.6737 10 7 4.5827 2.3192 -2.3287 11 6 5.0558 2.3603 -3.7146 12 6 4.0054 3.0442 -4.5920 13 6 3.7578 4.5005 -4.2939 14 1 3.0114 4.7835 -3.5664 15 6 4.4841 5.4717 -4.9498 16 7 4.2910 6.7413 -4.6663 17 14 5.7425 4.9842 -6.2415 18 1 5.1056 4.9971 -7.5828 19 1 6.8722 5.9479 -6.2206 20 1 6.2503 3.6200 -5.9477 21 6 2.8115 2.2039 -5.0496 22 6 3.9018 2.5943 -6.0506 23 6 3.5347 -0.7321 -0.0002 24 7 2.2892 -1.1328 -0.0001 25 1 -0.3632 -0.0005 1.0277 26 1 -0.3633 0.8903 -0.5134 27 1 -0.3633 -0.8898 -0.5142 28 1 1.9282 2.1194 -0.0004 29 1 6.0504 0.0811 0.5727 30 1 3.7511 2.7562 -2.0870 31 1 5.9899 2.9200 -3.7632 32 1 5.2220 1.3441 -4.0721 33 1 4.8017 7.4245 -5.1280 34 1 2.7741 1.1640 -4.7253 35 1 1.8470 2.7045 -5.1354 36 1 3.6541 3.3514 -6.7946 37 1 4.5823 1.8113 -6.3853 38 1 4.4054 -1.3711 0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139632891.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:26 Heat of formation + Delta-G solvation = 20.256971 kcal Electronic energy + Delta-G solvation = -21965.762858 eV Core-core repulsion = 18618.171103 eV Total energy + Delta-G solvation = -3347.591755 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.43879 -39.35491 -37.30990 -36.10654 -33.64053 -33.22457 -32.17542 -31.01422 -28.14683 -26.78362 -25.74910 -24.61409 -21.85380 -21.29113 -20.94445 -19.93143 -19.31149 -17.75253 -17.33063 -16.40198 -15.73159 -15.56097 -15.39576 -15.10849 -14.56293 -14.38756 -13.97026 -13.86293 -13.28047 -13.02992 -12.93015 -12.75306 -12.65515 -12.46807 -12.12323 -11.85320 -11.21165 -11.13055 -10.94804 -10.60190 -10.52174 -10.22975 -9.70063 -9.57313 -9.44429 -9.21676 -8.73257 -8.64716 -8.40951 -8.33540 -6.20905 -4.26129 1.72654 2.35436 2.55898 3.06507 3.24903 3.36738 3.41915 3.66109 4.34528 4.36049 4.52044 4.70060 4.81134 4.92435 4.94345 5.06778 5.07749 5.19379 5.26009 5.28465 5.63151 5.64088 5.92161 5.97771 6.01483 6.21262 6.36708 6.42664 6.46531 6.64487 6.81298 6.93546 7.01720 7.07715 7.50055 7.57645 7.62821 8.11038 8.34774 8.68057 8.77659 9.42304 10.90180 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.019378 B = 0.005256 C = 0.004735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.617706 B = 5326.221709 C = 5912.029295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.373 5.373 3 C 0.078 3.922 4 C -0.270 4.270 5 C 0.175 3.825 6 H 0.126 0.874 7 O -0.533 6.533 8 C 0.484 3.516 9 O -0.552 6.552 10 N -0.694 5.694 11 C 0.158 3.842 12 C -0.013 4.013 13 C -0.493 4.493 14 H 0.078 0.922 15 C 0.081 3.919 16 N -0.894 5.894 17 Si 0.880 3.120 18 H -0.280 1.280 19 H -0.294 1.294 20 H -0.256 1.256 21 C -0.179 4.179 22 C -0.193 4.193 23 C 0.064 3.936 24 N -0.296 5.296 25 H 0.074 0.926 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.181 0.819 29 H 0.380 0.620 30 H 0.403 0.597 31 H 0.063 0.937 32 H 0.044 0.956 33 H 0.266 0.734 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.618 -11.451 8.570 15.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.154 5.154 3 C -0.069 4.069 4 C -0.282 4.282 5 C 0.111 3.889 6 H 0.144 0.856 7 O -0.337 6.337 8 C 0.269 3.731 9 O -0.431 6.431 10 N -0.344 5.344 11 C 0.034 3.966 12 C -0.015 4.015 13 C -0.530 4.530 14 H 0.096 0.904 15 C -0.123 4.123 16 N -0.530 5.530 17 Si 0.708 3.292 18 H -0.206 1.206 19 H -0.221 1.221 20 H -0.180 1.180 21 C -0.216 4.216 22 C -0.231 4.231 23 C -0.122 4.122 24 N -0.117 5.117 25 H 0.093 0.907 26 H 0.110 0.890 27 H 0.107 0.893 28 H 0.198 0.802 29 H 0.228 0.772 30 H 0.238 0.762 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.105 0.895 36 H 0.108 0.892 37 H 0.093 0.907 38 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -6.830 -12.058 8.641 16.332 hybrid contribution 0.761 0.402 -1.130 1.420 sum -6.069 -11.656 7.512 15.137 Atomic orbital electron populations 1.21902 0.73958 1.04840 1.03368 1.48475 1.06758 1.03740 1.56442 1.22353 0.90366 0.93834 1.00333 1.20414 0.94523 0.94593 1.18672 1.19855 0.84124 0.96662 0.88275 0.85622 1.86568 1.57879 1.37141 1.52128 1.21343 0.85193 0.78837 0.87771 1.90665 1.21268 1.49599 1.81529 1.45788 1.25903 1.53660 1.09043 1.21100 0.97637 0.97990 0.79877 1.19626 0.94310 0.95761 0.91774 1.20159 1.22215 0.85651 1.24979 0.90382 1.24974 0.96172 0.94633 0.96494 1.69869 1.41282 0.99866 1.42011 0.86836 0.81234 0.79164 0.81931 1.20594 1.22113 1.18045 1.22851 0.94733 0.98545 1.05473 1.22934 1.02885 1.02906 0.94346 1.23619 0.95373 0.94164 0.99042 1.77362 1.01437 1.08242 1.24657 0.90702 0.89049 0.89284 0.80236 0.77159 0.76229 0.91915 0.93729 0.92417 0.91102 0.89499 0.89210 0.90666 0.80134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.68 11.47 59.85 0.69 1.37 16 2 N -0.37 -4.12 4.01 -68.16 -0.27 -4.39 16 3 C 0.08 0.85 11.40 -17.23 -0.20 0.65 16 4 C -0.27 -3.33 5.09 -105.06 -0.53 -3.87 16 5 C 0.18 2.37 3.83 -29.04 -0.11 2.26 16 6 H 0.13 1.51 8.14 -51.93 -0.42 1.09 16 7 O -0.53 -7.42 12.92 -55.06 -0.71 -8.13 16 8 C 0.48 8.42 7.13 -10.99 -0.08 8.34 16 9 O -0.55 -11.47 16.32 -14.27 -0.23 -11.70 16 10 N -0.69 -12.44 5.45 -60.29 -0.33 -12.77 16 11 C 0.16 3.27 5.24 -4.04 -0.02 3.24 16 12 C -0.01 -0.29 0.86 -155.66 -0.13 -0.42 16 13 C -0.49 -12.55 9.22 -34.44 -0.32 -12.87 16 14 H 0.08 2.11 8.06 -52.48 -0.42 1.69 16 15 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 16 N -0.89 -25.87 13.96 55.43 0.77 -25.10 16 17 Si 0.88 21.15 24.74 -169.99 -4.21 16.94 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 20 H -0.26 -5.93 6.00 56.52 0.34 -5.59 16 21 C -0.18 -3.37 9.96 -26.69 -0.27 -3.64 16 22 C -0.19 -3.93 7.19 -26.70 -0.19 -4.12 16 23 C 0.06 0.81 11.43 -17.37 -0.20 0.61 16 24 N -0.30 -3.94 12.58 30.62 0.39 -3.55 16 25 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.18 1.39 8.06 -52.48 -0.42 0.97 16 29 H 0.38 4.38 8.04 45.56 0.37 4.75 16 30 H 0.40 6.63 8.33 -40.82 -0.34 6.29 16 31 H 0.06 1.45 7.57 -51.93 -0.39 1.05 16 32 H 0.04 0.90 8.09 -51.93 -0.42 0.48 16 33 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 34 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 35 H 0.09 1.63 8.14 -51.93 -0.42 1.20 16 36 H 0.09 1.91 6.67 -51.93 -0.35 1.56 16 37 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 38 H 0.18 1.85 7.72 -52.48 -0.41 1.45 16 LS Contribution 326.33 15.07 4.92 4.92 Total: -1.00 -33.57 326.33 -5.68 -39.25 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -4.54 Total: 10.89 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: -1.46 Total: -6.34 kcal Atomic # 7 Polarization: -46.37 SS G_CDS: 0.56 Total: -45.82 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.94 Total: -19.83 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.21 Total: 16.94 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.57 -5.68 -39.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139632891.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.505 kcal (2) G-P(sol) polarization free energy of solvation -33.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds