Wall clock time and date at job start Tue Mar 31 2020 01:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34945 * 126.03842 * 2 1 4 4 C 1.35310 * 107.74667 * 179.75735 * 3 2 1 5 5 C 1.50698 * 126.04027 * 180.27398 * 4 3 2 6 6 H 1.09003 * 109.47169 * 21.69217 * 5 4 3 7 7 O 1.42903 * 109.47370 * 141.68712 * 5 4 3 8 8 C 1.50698 * 109.47605 * 261.68874 * 5 4 3 9 9 O 1.21280 * 120.00003 * 246.52550 * 8 5 4 10 10 N 1.34774 * 119.99836 * 66.51528 * 8 5 4 11 11 C 1.46501 * 119.99923 * 184.46749 * 10 8 5 12 12 C 1.53003 * 109.46953 * 175.21659 * 11 10 8 13 13 C 1.50697 * 115.54930 * 65.19948 * 12 11 10 14 14 H 1.08006 * 119.99735 * 270.75908 * 13 12 11 15 15 C 1.37874 * 120.00689 * 90.75915 * 13 12 11 16 16 N 1.31508 * 120.00957 * 181.64913 * 15 13 12 17 17 Si 1.86804 * 119.99530 * 1.64942 * 15 13 12 18 18 H 1.48496 * 109.47417 * 93.03791 * 17 15 13 19 19 H 1.48504 * 109.47169 * 213.04016 * 17 15 13 20 20 H 1.48500 * 109.47148 * 333.03456 * 17 15 13 21 21 C 1.52998 * 117.50099 * 279.52558 * 12 11 10 22 22 C 1.52995 * 117.49864 * 210.86323 * 12 11 10 23 23 C 1.39866 * 107.92168 * 0.39097 * 4 3 2 24 24 N 1.30839 * 108.20283 * 359.60317 * 23 4 3 25 25 H 1.08997 * 109.46606 * 269.97356 * 1 2 3 26 26 H 1.09001 * 109.46967 * 29.97205 * 1 2 3 27 27 H 1.08999 * 109.46816 * 149.97551 * 1 2 3 28 28 H 1.08007 * 126.12642 * 359.97438 * 3 2 1 29 29 H 0.96702 * 113.99792 * 60.00010 * 7 5 4 30 30 H 0.97000 * 120.00271 * 4.46712 * 10 8 5 31 31 H 1.08999 * 109.47325 * 295.21329 * 11 10 8 32 32 H 1.08997 * 109.47085 * 55.21855 * 11 10 8 33 33 H 0.96992 * 120.00783 * 180.02562 * 16 15 13 34 34 H 1.08999 * 117.49780 * 0.02562 * 21 12 11 35 35 H 1.08998 * 117.50024 * 145.01900 * 21 12 11 36 36 H 1.09004 * 117.50280 * 214.97814 * 22 12 11 37 37 H 1.09001 * 117.49941 * 359.97438 * 22 12 11 38 38 H 1.08003 * 125.90452 * 179.86537 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6665 0.0055 5 6 4.7680 1.5452 0.0133 6 1 4.5045 2.5321 0.3939 7 8 5.7673 0.9625 0.8523 8 6 5.3028 1.6742 -1.3897 9 8 6.3812 1.1975 -1.6737 10 7 4.5827 2.3192 -2.3287 11 6 5.0558 2.3603 -3.7146 12 6 4.0054 3.0442 -4.5920 13 6 3.7578 4.5005 -4.2939 14 1 3.0114 4.7835 -3.5664 15 6 4.4841 5.4717 -4.9498 16 7 4.2910 6.7413 -4.6663 17 14 5.7425 4.9842 -6.2415 18 1 5.1056 4.9971 -7.5828 19 1 6.8722 5.9479 -6.2206 20 1 6.2503 3.6200 -5.9477 21 6 2.8115 2.2039 -5.0496 22 6 3.9018 2.5943 -6.0506 23 6 3.5347 -0.7321 -0.0002 24 7 2.2892 -1.1328 -0.0001 25 1 -0.3632 -0.0005 1.0277 26 1 -0.3633 0.8903 -0.5134 27 1 -0.3633 -0.8898 -0.5142 28 1 1.9282 2.1194 -0.0004 29 1 6.0504 0.0811 0.5727 30 1 3.7511 2.7562 -2.0870 31 1 5.9899 2.9200 -3.7632 32 1 5.2220 1.3441 -4.0721 33 1 4.8017 7.4245 -5.1280 34 1 2.7741 1.1640 -4.7253 35 1 1.8470 2.7045 -5.1354 36 1 3.6541 3.3514 -6.7946 37 1 4.5823 1.8113 -6.3853 38 1 4.4054 -1.3711 0.0001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139632891.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:25 Heat of formation + Delta-G solvation = -5.471301 kcal Electronic energy + Delta-G solvation = -21966.878520 eV Core-core repulsion = 18618.171103 eV Total energy + Delta-G solvation = -3348.707417 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.32870 -40.71940 -38.88625 -37.31165 -35.08656 -34.20679 -34.04319 -32.00066 -29.24561 -28.09524 -27.27776 -25.95415 -23.43372 -22.19463 -21.94665 -21.25247 -20.92963 -19.03074 -18.41266 -18.14258 -17.07543 -16.91574 -16.49310 -16.31831 -15.91155 -15.44866 -15.28636 -15.16316 -14.73591 -14.67710 -14.19536 -13.77149 -13.74021 -13.51006 -13.37954 -13.09459 -13.02915 -12.75216 -12.21525 -12.18084 -11.98748 -11.59390 -11.52095 -10.99495 -10.83711 -10.64384 -10.40675 -10.31627 -9.89020 -9.39395 -8.29099 -6.35040 0.88934 1.33300 1.41429 1.50934 1.51061 1.66107 1.80586 2.30558 2.37199 3.06513 3.22423 3.51413 3.55982 3.92421 3.92965 4.02440 4.16172 4.29591 4.34822 4.38499 4.41216 4.48573 4.52997 4.74653 4.81152 4.82843 4.83459 5.01631 5.06974 5.28291 5.45662 5.53937 5.58449 5.70422 6.07854 6.29000 6.52390 6.65503 6.72313 6.78424 7.29871 7.36068 8.84910 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.019378 B = 0.005256 C = 0.004735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.617706 B = 5326.221709 C = 5912.029295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.373 5.373 3 C 0.086 3.914 4 C -0.287 4.287 5 C 0.190 3.810 6 H 0.143 0.857 7 O -0.543 6.543 8 C 0.483 3.517 9 O -0.589 6.589 10 N -0.692 5.692 11 C 0.166 3.834 12 C -0.034 4.034 13 C -0.478 4.478 14 H 0.054 0.946 15 C 0.029 3.971 16 N -0.941 5.941 17 Si 0.926 3.074 18 H -0.270 1.270 19 H -0.305 1.305 20 H -0.242 1.242 21 C -0.149 4.149 22 C -0.197 4.197 23 C 0.054 3.946 24 N -0.327 5.327 25 H 0.091 0.909 26 H 0.114 0.886 27 H 0.090 0.910 28 H 0.211 0.789 29 H 0.389 0.611 30 H 0.411 0.589 31 H 0.033 0.967 32 H 0.052 0.948 33 H 0.264 0.736 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.095 0.905 38 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.748 -12.804 8.659 17.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.154 5.154 3 C -0.062 4.062 4 C -0.299 4.299 5 C 0.126 3.874 6 H 0.161 0.839 7 O -0.348 6.348 8 C 0.269 3.731 9 O -0.470 6.470 10 N -0.342 5.342 11 C 0.042 3.958 12 C -0.035 4.035 13 C -0.515 4.515 14 H 0.072 0.928 15 C -0.170 4.170 16 N -0.580 5.580 17 Si 0.753 3.247 18 H -0.196 1.196 19 H -0.233 1.233 20 H -0.166 1.166 21 C -0.186 4.186 22 C -0.235 4.235 23 C -0.131 4.131 24 N -0.149 5.149 25 H 0.109 0.891 26 H 0.132 0.868 27 H 0.108 0.892 28 H 0.227 0.773 29 H 0.239 0.761 30 H 0.247 0.753 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.113 0.887 35 H 0.107 0.893 36 H 0.097 0.903 37 H 0.113 0.887 38 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -7.999 -13.451 8.737 17.923 hybrid contribution 1.012 0.798 -1.090 1.688 sum -6.987 -12.652 7.648 16.352 Atomic orbital electron populations 1.22253 0.71737 1.06048 1.04861 1.48828 1.08057 1.03206 1.55302 1.22838 0.89886 0.95059 0.98424 1.20306 0.94591 0.94325 1.20715 1.19761 0.84313 0.97889 0.85462 0.83929 1.86543 1.58237 1.37923 1.52107 1.22112 0.84439 0.77472 0.89028 1.90642 1.22939 1.50992 1.82447 1.45738 1.26270 1.53901 1.08270 1.20813 0.96089 0.97640 0.81299 1.19456 0.96756 0.94069 0.93249 1.20351 1.20274 0.87800 1.23101 0.92822 1.25655 0.98122 0.94603 0.98586 1.69987 1.43128 1.00951 1.43942 0.86087 0.79098 0.79169 0.80354 1.19598 1.23294 1.16553 1.22840 0.93698 0.99152 1.02914 1.23010 1.04003 1.03171 0.93281 1.23904 0.95742 0.94671 0.98817 1.77314 1.01953 1.09730 1.25854 0.89077 0.86803 0.89158 0.77252 0.76142 0.75316 0.94838 0.92965 0.92688 0.88701 0.89270 0.90251 0.88709 0.79075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.97 11.47 127.77 1.47 2.44 16 2 N -0.37 -7.29 4.01 -369.55 -1.48 -8.78 16 3 C 0.09 1.62 11.40 83.54 0.95 2.57 16 4 C -0.29 -6.51 5.09 -20.15 -0.10 -6.62 16 5 C 0.19 4.83 3.83 29.10 0.11 4.94 16 6 H 0.14 3.11 8.14 -2.39 -0.02 3.09 16 7 O -0.54 -14.43 12.92 -130.02 -1.68 -16.11 16 8 C 0.48 16.24 7.13 87.66 0.63 16.87 16 9 O -0.59 -24.18 16.32 15.93 0.26 -23.92 16 10 N -0.69 -23.81 5.45 -463.06 -2.52 -26.33 16 11 C 0.17 6.65 5.24 86.38 0.45 7.10 16 12 C -0.03 -1.41 0.86 -52.93 -0.05 -1.45 16 13 C -0.48 -24.15 9.22 25.60 0.24 -23.91 16 14 H 0.05 2.92 8.06 -2.91 -0.02 2.89 16 15 C 0.03 1.57 5.47 84.65 0.46 2.03 16 16 N -0.94 -55.47 13.96 21.45 0.30 -55.17 16 17 Si 0.93 43.33 24.74 68.60 1.70 45.03 16 18 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 19 H -0.31 -14.72 7.11 99.48 0.71 -14.02 16 20 H -0.24 -10.67 6.00 99.48 0.60 -10.07 16 21 C -0.15 -5.13 9.96 30.62 0.30 -4.82 16 22 C -0.20 -7.46 7.19 30.62 0.22 -7.24 16 23 C 0.05 1.29 11.43 85.23 0.97 2.26 16 24 N -0.33 -8.17 12.58 -57.02 -0.72 -8.89 16 25 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.21 2.46 8.06 -2.91 -0.02 2.44 16 29 H 0.39 8.65 8.04 -74.06 -0.60 8.05 16 30 H 0.41 12.78 8.33 -92.71 -0.77 12.00 16 31 H 0.03 1.53 7.57 -2.39 -0.02 1.51 16 32 H 0.05 2.01 8.09 -2.39 -0.02 1.99 16 33 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 34 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 35 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 36 H 0.08 3.19 6.67 -2.39 -0.02 3.17 16 37 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 38 H 0.19 3.77 7.72 -2.91 -0.02 3.74 16 Total: -1.00 -72.21 326.33 1.12 -71.09 By element: Atomic # 1 Polarization: 29.30 SS G_CDS: -0.39 Total: 28.91 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: 5.66 Total: -5.83 kcal Atomic # 7 Polarization: -94.74 SS G_CDS: -4.43 Total: -99.17 kcal Atomic # 8 Polarization: -38.62 SS G_CDS: -1.42 Total: -40.04 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 1.70 Total: 45.03 kcal Total: -72.21 1.12 -71.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139632891.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.619 kcal (2) G-P(sol) polarization free energy of solvation -72.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds