Wall clock time and date at job start Tue Mar 31 2020 01:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45202 * 109.46941 * 2 1 4 4 C 1.34228 * 116.99717 * 179.97438 * 3 2 1 5 5 O 1.20821 * 119.99984 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.99724 * 179.97438 * 4 3 2 7 7 N 1.46908 * 109.46702 * 176.22303 * 6 4 3 8 8 C 1.46904 * 110.99511 * 160.69663 * 7 6 4 9 9 C 1.50701 * 109.47196 * 287.47225 * 8 7 6 10 10 H 1.08004 * 120.00098 * 358.47420 * 9 8 7 11 11 C 1.37873 * 119.99894 * 178.47816 * 9 8 7 12 12 N 1.31512 * 120.00067 * 359.97438 * 11 9 8 13 13 Si 1.86810 * 119.99896 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.46935 * 89.99742 * 13 11 9 15 15 H 1.48503 * 109.46661 * 210.00020 * 13 11 9 16 16 H 1.48496 * 109.46826 * 329.99764 * 13 11 9 17 17 C 1.46893 * 111.00378 * 284.65039 * 7 6 4 18 18 C 1.50696 * 109.47335 * 170.00266 * 17 7 6 19 19 C 1.38618 * 120.44703 * 95.00031 * 18 17 7 20 20 C 1.38585 * 118.39725 * 179.70302 * 19 18 17 21 21 N 1.32345 * 119.10203 * 0.27805 * 20 19 18 22 22 C 1.31775 * 120.82363 * 359.97438 * 21 20 19 23 23 N 1.31810 * 121.75464 * 0.02562 * 22 21 20 24 24 H 1.09003 * 109.47556 * 300.00078 * 1 2 3 25 25 H 1.08998 * 109.47182 * 60.00227 * 1 2 3 26 26 H 1.09005 * 109.46965 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46958 * 240.00139 * 2 1 3 28 28 H 1.09004 * 109.46523 * 119.99916 * 2 1 3 29 29 H 1.09004 * 109.46865 * 56.22752 * 6 4 3 30 30 H 1.08996 * 109.47260 * 296.22457 * 6 4 3 31 31 H 1.09006 * 109.47209 * 47.47092 * 8 7 6 32 32 H 1.08991 * 109.46897 * 167.47260 * 8 7 6 33 33 H 0.97005 * 120.00028 * 179.97438 * 12 11 9 34 34 H 1.09001 * 109.47202 * 49.99941 * 17 7 6 35 35 H 1.09002 * 109.46893 * 290.00583 * 17 7 6 36 36 H 1.07998 * 120.80104 * 359.97438 * 19 18 17 37 37 H 1.07992 * 120.44572 * 180.29378 * 20 19 18 38 38 H 1.08001 * 119.12517 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9374 0.0000 7 7 5.3849 2.8617 0.0920 8 6 6.0060 4.1151 -0.3566 9 6 5.8869 4.2268 -1.8547 10 1 5.4206 3.4334 -2.4200 11 6 6.3733 5.3417 -2.5037 12 7 6.9407 6.3081 -1.8154 13 14 6.2263 5.4798 -4.3609 14 1 4.9438 6.1432 -4.7079 15 1 7.3581 6.2835 -4.8886 16 1 6.2601 4.1225 -4.9623 17 6 5.8099 2.5225 1.4566 18 6 7.2848 2.2134 1.4612 19 6 8.2079 3.1983 1.7763 20 6 9.5533 2.8658 1.7737 21 7 9.9100 1.6288 1.4670 22 6 9.0045 0.7195 1.1675 23 7 7.7165 0.9995 1.1598 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8901 29 1 3.5312 3.4920 0.8538 30 1 3.6404 3.4462 -0.9223 31 1 5.5002 4.9594 0.1120 32 1 7.0588 4.1202 -0.0745 33 1 7.2832 7.0923 -2.2720 34 1 5.2549 1.6510 1.8039 35 1 5.6133 3.3659 2.1185 36 1 7.8862 4.1995 2.0223 37 1 10.3004 3.6061 2.0188 38 1 9.3262 -0.2817 0.9218 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140351505.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:44 Heat of formation + Delta-G solvation = -28.400957 kcal Electronic energy + Delta-G solvation = -21726.204229 eV Core-core repulsion = 18376.502508 eV Total energy + Delta-G solvation = -3349.701721 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.62016 -40.00246 -37.16171 -35.81399 -33.45662 -32.58304 -31.92808 -31.58788 -28.22591 -27.92503 -24.89413 -24.00694 -23.08401 -22.52658 -21.17776 -19.98263 -17.35636 -17.12299 -16.74461 -16.44833 -16.18396 -15.97540 -15.05134 -14.76643 -14.71166 -14.26074 -13.82785 -13.59258 -13.47097 -13.16820 -12.86206 -12.51621 -12.11201 -11.98430 -11.84993 -11.47418 -11.38216 -11.21909 -10.78573 -10.77702 -10.48654 -10.31806 -10.25647 -10.03310 -9.84642 -9.36098 -9.15166 -8.80027 -8.52485 -7.52406 -6.13225 -4.14792 1.31612 1.47137 2.72545 2.93565 3.26864 3.33859 3.39523 4.09294 4.36608 4.45485 4.53323 4.77465 4.94328 4.95092 5.01744 5.15063 5.22856 5.29929 5.37207 5.45128 5.56361 5.72533 5.74702 5.77825 5.87894 5.93142 6.00060 6.03562 6.15321 6.73482 6.78319 6.94968 7.06630 7.42174 7.65223 7.77785 7.96994 8.28133 8.35069 8.51146 8.92421 9.50246 10.97045 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.009553 B = 0.007178 C = 0.004492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2930.389214 B = 3900.074959 C = 6232.397212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.062 3.938 3 O -0.368 6.368 4 C 0.454 3.546 5 O -0.482 6.482 6 C 0.075 3.925 7 N -0.513 5.513 8 C 0.189 3.811 9 C -0.512 4.512 10 H 0.064 0.936 11 C 0.059 3.941 12 N -0.896 5.896 13 Si 0.897 3.103 14 H -0.279 1.279 15 H -0.286 1.286 16 H -0.273 1.273 17 C 0.100 3.900 18 C 0.202 3.798 19 C -0.209 4.209 20 C 0.141 3.859 21 N -0.531 5.531 22 C 0.284 3.716 23 N -0.495 5.495 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.129 0.871 31 H 0.001 0.999 32 H 0.041 0.959 33 H 0.263 0.737 34 H 0.086 0.914 35 H 0.047 0.953 36 H 0.146 0.854 37 H 0.164 0.836 38 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.208 -7.079 8.164 12.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.012 4.012 3 O -0.286 6.286 4 C 0.295 3.705 5 O -0.366 6.366 6 C -0.054 4.054 7 N -0.239 5.239 8 C 0.065 3.935 9 C -0.550 4.550 10 H 0.082 0.918 11 C -0.143 4.143 12 N -0.535 5.535 13 Si 0.724 3.276 14 H -0.205 1.205 15 H -0.212 1.212 16 H -0.197 1.197 17 C -0.029 4.029 18 C 0.055 3.945 19 C -0.231 4.231 20 C -0.024 4.024 21 N -0.245 5.245 22 C -0.004 4.004 23 N -0.209 5.209 24 H 0.083 0.917 25 H 0.085 0.915 26 H 0.094 0.906 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.147 0.853 31 H 0.019 0.981 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.104 0.896 35 H 0.065 0.935 36 H 0.164 0.836 37 H 0.181 0.819 38 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -5.457 -8.522 7.598 12.654 hybrid contribution -0.423 1.527 -0.451 1.647 sum -5.879 -6.995 7.147 11.601 Atomic orbital electron populations 1.21789 0.93100 1.02533 1.03377 1.22893 0.94910 0.81084 1.02321 1.86510 1.25578 1.31629 1.84887 1.24174 0.79879 0.93620 0.72870 1.90677 1.59899 1.42672 1.43389 1.21506 0.89635 0.89072 1.05221 1.61613 1.04054 1.38896 1.19359 1.19956 0.94870 0.82321 0.96377 1.21121 1.38858 1.03613 0.91437 0.91783 1.24947 0.95112 0.95559 0.98634 1.69931 1.39487 1.08383 1.35737 0.86507 0.77665 0.78217 0.85178 1.20547 1.21176 1.19748 1.21003 0.89746 1.00363 0.91785 1.21415 0.96598 0.88373 0.88163 1.22824 0.95346 1.01795 1.03176 1.23075 0.94691 0.93141 0.91493 1.68323 1.39900 1.02753 1.13551 1.24869 0.84535 0.98987 0.92001 1.68258 1.17905 1.21754 1.12942 0.91673 0.91533 0.90650 0.91475 0.91658 0.91576 0.85289 0.98142 0.94143 0.92790 0.89562 0.93534 0.83650 0.81903 0.79348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 10.29 37.16 0.38 -0.97 16 2 C 0.06 0.77 6.19 37.16 0.23 1.00 16 3 O -0.37 -5.67 10.22 -39.25 -0.40 -6.07 16 4 C 0.45 8.14 7.54 36.01 0.27 8.41 16 5 O -0.48 -10.00 15.13 -18.75 -0.28 -10.28 16 6 C 0.07 1.36 5.42 -4.97 -0.03 1.34 16 7 N -0.51 -10.83 3.98 -238.96 -0.95 -11.78 16 8 C 0.19 4.57 4.58 -4.97 -0.02 4.55 16 9 C -0.51 -13.87 8.35 -34.44 -0.29 -14.15 16 10 H 0.06 1.77 7.76 -52.48 -0.41 1.36 16 11 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 12 N -0.90 -25.33 13.29 55.43 0.74 -24.60 16 13 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 14 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 15 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 16 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 17 C 0.10 1.82 4.96 -4.98 -0.02 1.79 16 18 C 0.20 3.80 5.72 -82.24 -0.47 3.33 16 19 C -0.21 -3.53 8.17 -39.31 -0.32 -3.85 16 20 C 0.14 2.22 11.31 -17.20 -0.19 2.03 16 21 N -0.53 -8.95 10.44 -14.58 -0.15 -9.11 16 22 C 0.28 4.82 12.29 -92.16 -1.13 3.69 16 23 N -0.49 -9.57 10.38 -10.80 -0.11 -9.68 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.86 8.13 -51.93 -0.42 0.44 16 28 H 0.07 0.79 8.13 -51.93 -0.42 0.37 16 29 H 0.07 1.03 8.01 -51.93 -0.42 0.61 16 30 H 0.13 2.46 7.12 -51.93 -0.37 2.09 16 31 H 0.00 0.02 8.05 -51.93 -0.42 -0.40 16 32 H 0.04 1.04 5.56 -51.93 -0.29 0.75 16 33 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 34 H 0.09 1.56 6.80 -51.93 -0.35 1.21 16 35 H 0.05 0.74 8.04 -51.93 -0.42 0.33 16 36 H 0.15 2.23 8.01 -52.49 -0.42 1.81 16 37 H 0.16 2.00 8.06 -52.49 -0.42 1.58 16 38 H 0.19 2.53 8.06 -52.49 -0.42 2.11 16 LS Contribution 329.03 15.07 4.96 4.96 Total: -1.00 -32.65 329.03 -8.10 -40.76 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -5.18 Total: 0.84 kcal Atomic # 6 Polarization: 10.38 SS G_CDS: -1.69 Total: 8.69 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: -0.48 Total: -55.16 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: -0.68 Total: -16.36 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.65 -8.10 -40.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140351505.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.356 kcal (2) G-P(sol) polarization free energy of solvation -32.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds