Wall clock time and date at job start Tue Mar 31 2020 01:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45202 * 109.46941 * 2 1 4 4 C 1.34228 * 116.99717 * 179.97438 * 3 2 1 5 5 O 1.20821 * 119.99984 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.99724 * 179.97438 * 4 3 2 7 7 N 1.46908 * 109.46702 * 176.22303 * 6 4 3 8 8 C 1.46904 * 110.99511 * 160.69663 * 7 6 4 9 9 C 1.50701 * 109.47196 * 287.47225 * 8 7 6 10 10 H 1.08004 * 120.00098 * 358.47420 * 9 8 7 11 11 C 1.37873 * 119.99894 * 178.47816 * 9 8 7 12 12 N 1.31512 * 120.00067 * 359.97438 * 11 9 8 13 13 Si 1.86810 * 119.99896 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.46935 * 89.99742 * 13 11 9 15 15 H 1.48503 * 109.46661 * 210.00020 * 13 11 9 16 16 H 1.48496 * 109.46826 * 329.99764 * 13 11 9 17 17 C 1.46893 * 111.00378 * 284.65039 * 7 6 4 18 18 C 1.50696 * 109.47335 * 170.00266 * 17 7 6 19 19 C 1.38618 * 120.44703 * 95.00031 * 18 17 7 20 20 C 1.38585 * 118.39725 * 179.70302 * 19 18 17 21 21 N 1.32345 * 119.10203 * 0.27805 * 20 19 18 22 22 C 1.31775 * 120.82363 * 359.97438 * 21 20 19 23 23 N 1.31810 * 121.75464 * 0.02562 * 22 21 20 24 24 H 1.09003 * 109.47556 * 300.00078 * 1 2 3 25 25 H 1.08998 * 109.47182 * 60.00227 * 1 2 3 26 26 H 1.09005 * 109.46965 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46958 * 240.00139 * 2 1 3 28 28 H 1.09004 * 109.46523 * 119.99916 * 2 1 3 29 29 H 1.09004 * 109.46865 * 56.22752 * 6 4 3 30 30 H 1.08996 * 109.47260 * 296.22457 * 6 4 3 31 31 H 1.09006 * 109.47209 * 47.47092 * 8 7 6 32 32 H 1.08991 * 109.46897 * 167.47260 * 8 7 6 33 33 H 0.97005 * 120.00028 * 179.97438 * 12 11 9 34 34 H 1.09001 * 109.47202 * 49.99941 * 17 7 6 35 35 H 1.09002 * 109.46893 * 290.00583 * 17 7 6 36 36 H 1.07998 * 120.80104 * 359.97438 * 19 18 17 37 37 H 1.07992 * 120.44572 * 180.29378 * 20 19 18 38 38 H 1.08001 * 119.12517 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9374 0.0000 7 7 5.3849 2.8617 0.0920 8 6 6.0060 4.1151 -0.3566 9 6 5.8869 4.2268 -1.8547 10 1 5.4206 3.4334 -2.4200 11 6 6.3733 5.3417 -2.5037 12 7 6.9407 6.3081 -1.8154 13 14 6.2263 5.4798 -4.3609 14 1 4.9438 6.1432 -4.7079 15 1 7.3581 6.2835 -4.8886 16 1 6.2601 4.1225 -4.9623 17 6 5.8099 2.5225 1.4566 18 6 7.2848 2.2134 1.4612 19 6 8.2079 3.1983 1.7763 20 6 9.5533 2.8658 1.7737 21 7 9.9100 1.6288 1.4670 22 6 9.0045 0.7195 1.1675 23 7 7.7165 0.9995 1.1598 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8901 29 1 3.5312 3.4920 0.8538 30 1 3.6404 3.4462 -0.9223 31 1 5.5002 4.9594 0.1120 32 1 7.0588 4.1202 -0.0745 33 1 7.2832 7.0923 -2.2720 34 1 5.2549 1.6510 1.8039 35 1 5.6133 3.3659 2.1185 36 1 7.8862 4.1995 2.0223 37 1 10.3004 3.6061 2.0188 38 1 9.3262 -0.2817 0.9218 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140351505.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:44 Heat of formation + Delta-G solvation = -49.014083 kcal Electronic energy + Delta-G solvation = -21727.098082 eV Core-core repulsion = 18376.502508 eV Total energy + Delta-G solvation = -3350.595574 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.95337 -41.37649 -38.64597 -37.25182 -35.02173 -34.40993 -33.22331 -32.59644 -29.90697 -29.47765 -26.55058 -25.32721 -24.36467 -23.90252 -22.59894 -21.47901 -18.81488 -18.57464 -18.32855 -18.02811 -17.44752 -17.37195 -16.61384 -16.35113 -16.16455 -15.62988 -15.26188 -14.98872 -14.84135 -14.47375 -14.06577 -13.88838 -13.59262 -13.46652 -13.11174 -13.08999 -12.73527 -12.62101 -12.50903 -12.44801 -12.07452 -11.81269 -11.59472 -11.46721 -11.43598 -11.20342 -10.65009 -10.44560 -10.15021 -9.14514 -8.21109 -6.28941 -0.01358 0.15984 1.29769 1.39187 1.41241 1.51307 1.66287 2.39115 2.75836 3.12308 3.15194 3.30412 3.36630 3.63953 3.86522 4.02542 4.04038 4.14845 4.19257 4.22230 4.38432 4.41045 4.52833 4.54025 4.66411 4.83567 4.88292 4.95788 5.13718 5.14521 5.18489 5.48867 5.51531 5.63027 5.99639 6.10090 6.12951 6.45196 6.83338 6.91774 7.19011 7.39676 8.88324 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.009553 B = 0.007178 C = 0.004492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2930.389214 B = 3900.074959 C = 6232.397212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.053 3.947 3 O -0.365 6.365 4 C 0.463 3.537 5 O -0.515 6.515 6 C 0.073 3.927 7 N -0.532 5.532 8 C 0.207 3.793 9 C -0.527 4.527 10 H 0.050 0.950 11 C 0.016 3.984 12 N -0.922 5.922 13 Si 0.954 3.046 14 H -0.267 1.267 15 H -0.282 1.282 16 H -0.278 1.278 17 C 0.104 3.896 18 C 0.179 3.821 19 C -0.215 4.215 20 C 0.143 3.857 21 N -0.538 5.538 22 C 0.278 3.722 23 N -0.525 5.525 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.101 0.899 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.096 0.904 30 H 0.118 0.882 31 H -0.010 1.010 32 H 0.025 0.975 33 H 0.265 0.735 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.157 0.843 37 H 0.199 0.801 38 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.801 -7.104 8.281 12.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.021 4.021 3 O -0.282 6.282 4 C 0.305 3.695 5 O -0.402 6.402 6 C -0.055 4.055 7 N -0.258 5.258 8 C 0.082 3.918 9 C -0.565 4.565 10 H 0.069 0.931 11 C -0.184 4.184 12 N -0.562 5.562 13 Si 0.780 3.220 14 H -0.193 1.193 15 H -0.207 1.207 16 H -0.203 1.203 17 C -0.024 4.024 18 C 0.033 3.967 19 C -0.237 4.237 20 C -0.022 4.022 21 N -0.252 5.252 22 C -0.010 4.010 23 N -0.240 5.240 24 H 0.090 0.910 25 H 0.085 0.915 26 H 0.119 0.881 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.114 0.886 30 H 0.135 0.865 31 H 0.008 0.992 32 H 0.043 0.957 33 H 0.074 0.926 34 H 0.103 0.897 35 H 0.088 0.912 36 H 0.175 0.825 37 H 0.216 0.784 38 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -6.090 -8.550 7.724 13.032 hybrid contribution -0.268 1.474 -0.448 1.564 sum -6.358 -7.076 7.275 11.976 Atomic orbital electron populations 1.21812 0.90090 1.04348 1.03739 1.23256 0.97211 0.79406 1.02212 1.86498 1.23870 1.33658 1.84187 1.23989 0.80531 0.92942 0.71995 1.90665 1.60854 1.43555 1.45124 1.21502 0.88354 0.89792 1.05890 1.61420 1.05658 1.37197 1.21558 1.19569 0.94115 0.83342 0.94786 1.21366 1.38736 1.03312 0.93104 0.93131 1.25644 0.94836 0.95312 1.02585 1.70011 1.40125 1.08795 1.37220 0.85609 0.78151 0.77847 0.80397 1.19262 1.20728 1.20261 1.21016 0.89801 1.01007 0.90619 1.21610 0.97134 0.88940 0.89055 1.23001 0.95696 1.01936 1.03115 1.23685 0.95099 0.93446 0.90008 1.68424 1.39774 1.03231 1.13785 1.25449 0.83994 1.00250 0.91315 1.68260 1.19154 1.22392 1.14150 0.90974 0.91475 0.88086 0.92124 0.91365 0.88600 0.86450 0.99197 0.95692 0.92580 0.89721 0.91247 0.82494 0.78436 0.76654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 10.29 71.98 0.74 -1.51 16 2 C 0.05 1.25 6.19 71.98 0.45 1.70 16 3 O -0.36 -10.92 10.22 -51.39 -0.53 -11.45 16 4 C 0.46 16.52 7.54 71.24 0.54 17.06 16 5 O -0.51 -21.53 15.13 21.98 0.33 -21.20 16 6 C 0.07 2.66 5.42 85.56 0.46 3.12 16 7 N -0.53 -22.55 3.98 -909.93 -3.62 -26.18 16 8 C 0.21 10.10 4.58 85.56 0.39 10.49 16 9 C -0.53 -28.80 8.35 25.60 0.21 -28.59 16 10 H 0.05 2.84 7.76 -2.91 -0.02 2.82 16 11 C 0.02 0.85 5.46 84.65 0.46 1.31 16 12 N -0.92 -51.97 13.29 21.45 0.28 -51.68 16 13 Si 0.95 43.53 29.54 68.60 2.03 45.56 16 14 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 15 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 16 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 17 C 0.10 3.76 4.96 85.56 0.42 4.19 16 18 C 0.18 6.72 5.72 42.57 0.24 6.96 16 19 C -0.22 -7.11 8.17 22.44 0.18 -6.93 16 20 C 0.14 4.29 11.31 84.70 0.96 5.25 16 21 N -0.54 -17.49 10.44 -200.06 -2.09 -19.58 16 22 C 0.28 9.24 12.29 180.89 2.22 11.46 16 23 N -0.52 -20.31 10.38 -188.08 -1.95 -22.26 16 24 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.07 1.06 8.14 -2.39 -0.02 1.05 16 26 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 27 H 0.06 1.52 8.13 -2.39 -0.02 1.50 16 28 H 0.07 1.58 8.13 -2.38 -0.02 1.56 16 29 H 0.10 2.87 8.01 -2.38 -0.02 2.85 16 30 H 0.12 4.53 7.12 -2.39 -0.02 4.51 16 31 H -0.01 -0.49 8.05 -2.38 -0.02 -0.50 16 32 H 0.03 1.30 5.56 -2.39 -0.01 1.28 16 33 H 0.27 14.17 8.31 -92.70 -0.77 13.40 16 34 H 0.08 3.07 6.80 -2.39 -0.02 3.05 16 35 H 0.07 2.15 8.04 -2.39 -0.02 2.14 16 36 H 0.16 4.69 8.01 -2.91 -0.02 4.67 16 37 H 0.20 4.36 8.06 -2.91 -0.02 4.33 16 38 H 0.22 5.58 8.06 -2.91 -0.02 5.56 16 Total: -1.00 -69.58 329.03 2.80 -66.78 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: 1.06 Total: 15.48 kcal Atomic # 6 Polarization: 17.24 SS G_CDS: 7.29 Total: 24.53 kcal Atomic # 7 Polarization: -112.32 SS G_CDS: -7.38 Total: -119.70 kcal Atomic # 8 Polarization: -32.45 SS G_CDS: -0.19 Total: -32.65 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -69.58 2.80 -66.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140351505.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.768 kcal (2) G-P(sol) polarization free energy of solvation -69.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds