Wall clock time and date at job start Tue Mar 31 2020 01:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36941 * 119.99885 * 2 1 4 4 H 1.07999 * 119.99731 * 202.37901 * 3 2 1 5 5 C 1.38808 * 119.99688 * 22.38051 * 3 2 1 6 6 N 1.31618 * 120.00420 * 11.32995 * 5 3 2 7 7 Si 1.86802 * 119.99818 * 191.32558 * 5 3 2 8 8 H 1.48499 * 109.47229 * 59.99868 * 7 5 3 9 9 H 1.48501 * 109.47267 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47033 * 300.00228 * 7 5 3 11 11 C 1.46496 * 120.00208 * 180.02562 * 2 1 3 12 12 C 1.50705 * 109.47182 * 269.99736 * 11 2 1 13 13 C 1.38345 * 119.95466 * 89.99565 * 12 11 2 14 14 C 1.37918 * 120.25597 * 180.25848 * 13 12 11 15 15 C 1.39623 * 119.96233 * 359.49411 * 14 13 12 16 16 C 1.39195 * 119.35524 * 0.52220 * 15 14 13 17 17 C 1.37894 * 120.28872 * 359.73015 * 16 15 14 18 18 C 1.50915 * 107.53979 * 179.76180 * 16 15 14 19 19 C 1.50903 * 106.03834 * 0.02562 * 18 16 15 20 20 C 1.37851 * 132.18610 * 180.02562 * 19 18 16 21 21 C 1.38390 * 120.04271 * 179.97438 * 20 19 18 22 22 C 1.38298 * 120.09604 * 0.02562 * 21 20 19 23 23 C 1.37969 * 120.25594 * 0.02562 * 22 21 20 24 24 C 1.39254 * 107.52673 * 359.97438 * 19 18 16 25 25 H 1.09005 * 109.46640 * 274.20227 * 1 2 3 26 26 H 1.08999 * 109.47226 * 34.19748 * 1 2 3 27 27 H 1.08994 * 109.47052 * 154.20385 * 1 2 3 28 28 H 0.96997 * 120.00215 * 180.02562 * 6 5 3 29 29 H 1.08999 * 109.47379 * 149.99467 * 11 2 1 30 30 H 1.09002 * 109.47255 * 29.99100 * 11 2 1 31 31 H 1.07993 * 119.86679 * 359.97438 * 13 12 11 32 32 H 1.08006 * 120.01901 * 179.74351 * 14 13 12 33 33 H 1.08007 * 119.97969 * 179.97438 * 17 16 15 34 34 H 1.08999 * 110.13774 * 119.14505 * 18 16 15 35 35 H 1.09000 * 110.13526 * 240.86033 * 18 16 15 36 36 H 1.08004 * 119.97590 * 359.95324 * 20 19 18 37 37 H 1.08002 * 119.95421 * 180.02562 * 21 20 19 38 38 H 1.07996 * 119.87514 * 179.97438 * 22 21 20 39 39 H 1.07994 * 120.02144 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1687 1.2211 -0.3561 5 6 1.5340 2.3427 0.4577 6 7 0.3845 2.2687 1.0946 7 14 2.3369 4.0047 0.1700 8 1 2.4915 4.2338 -1.2891 9 1 1.4855 5.0732 0.7519 10 1 3.6724 4.0282 0.8189 11 6 2.1975 -1.2687 -0.0006 12 6 2.4488 -1.7043 1.4201 13 6 1.5259 -2.5033 2.0711 14 6 1.7470 -2.9012 3.3730 15 6 2.9112 -2.5060 4.0348 16 6 3.8336 -1.7017 3.3715 17 6 3.6018 -1.3043 2.0716 18 6 4.9724 -1.4343 4.3250 19 6 4.6252 -2.1586 5.6026 20 6 5.2816 -2.2733 6.8094 21 6 4.7224 -3.0161 7.8344 22 6 3.5046 -3.6452 7.6504 23 6 2.8411 -3.5368 6.4455 24 6 3.3981 -2.7874 5.4080 25 1 -0.3633 0.0753 1.0250 26 1 -0.3633 0.8500 -0.5776 27 1 -0.3633 -0.9252 -0.4472 28 1 -0.0459 3.0771 1.4141 29 1 3.1499 -1.1381 -0.5144 30 1 1.6084 -2.0282 -0.5146 31 1 0.6267 -2.8128 1.5593 32 1 1.0219 -3.5216 3.8789 33 1 4.3207 -0.6799 1.5618 34 1 5.9044 -1.8233 3.9149 35 1 5.0616 -0.3643 4.5122 36 1 6.2331 -1.7833 6.9548 37 1 5.2377 -3.1047 8.7794 38 1 3.0717 -4.2244 8.4525 39 1 1.8902 -4.0293 6.3061 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001141740071.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:33 Heat of formation + Delta-G solvation = 76.795309 kcal Electronic energy + Delta-G solvation = -20603.310764 eV Core-core repulsion = 17669.019958 eV Total energy + Delta-G solvation = -2934.290806 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.132 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.45030 -38.08758 -35.72230 -34.01508 -31.92638 -31.02764 -30.20657 -28.83617 -26.68250 -25.97860 -25.51247 -23.03457 -21.29822 -21.21544 -20.68137 -19.68394 -16.79694 -16.64461 -15.64790 -15.47173 -14.87622 -14.51694 -14.34439 -14.14630 -13.86071 -13.60338 -13.17811 -13.15202 -12.77087 -12.41468 -12.17662 -12.07333 -11.64643 -11.31689 -11.21833 -10.92813 -10.85293 -10.71560 -10.65420 -10.36914 -10.21490 -10.03665 -9.89061 -9.23679 -8.77724 -8.58058 -8.17305 -7.54206 -6.80117 -5.76151 -3.19618 0.96117 1.42957 1.96601 2.28375 3.37047 3.42347 3.43018 3.79662 4.40171 4.46701 4.52896 4.76592 4.96731 5.01382 5.10018 5.36948 5.41727 5.47163 5.57769 5.64347 5.70810 5.75950 5.80107 5.90370 6.02068 6.03647 6.18428 6.19446 6.37859 6.48314 6.53566 6.56399 6.63773 6.74229 6.81433 6.95079 7.05104 7.12585 7.34067 7.36712 7.56385 7.71433 7.78279 8.35534 9.19305 9.81530 10.30440 11.28317 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.021106 B = 0.004551 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.325255 B = 6151.384202 C = 6770.113646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.589 5.589 3 C -0.254 4.254 4 H 0.070 0.930 5 C 0.005 3.995 6 N -0.903 5.903 7 Si 0.905 3.095 8 H -0.283 1.283 9 H -0.290 1.290 10 H -0.282 1.282 11 C 0.179 3.821 12 C -0.063 4.063 13 C -0.117 4.117 14 C -0.094 4.094 15 C -0.092 4.092 16 C -0.088 4.088 17 C -0.086 4.086 18 C -0.042 4.042 19 C -0.096 4.096 20 C -0.102 4.102 21 C -0.127 4.127 22 C -0.122 4.122 23 C -0.106 4.106 24 C -0.037 4.037 25 H 0.029 0.971 26 H 0.047 0.953 27 H -0.002 1.002 28 H 0.254 0.746 29 H 0.055 0.945 30 H 0.049 0.951 31 H 0.117 0.883 32 H 0.111 0.889 33 H 0.120 0.880 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.720 -11.482 8.581 15.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.309 5.309 3 C -0.384 4.384 4 H 0.088 0.912 5 C -0.194 4.194 6 N -0.547 5.547 7 Si 0.735 3.265 8 H -0.209 1.209 9 H -0.216 1.216 10 H -0.209 1.209 11 C 0.052 3.948 12 C -0.067 4.067 13 C -0.136 4.136 14 C -0.112 4.112 15 C -0.092 4.092 16 C -0.089 4.089 17 C -0.106 4.106 18 C -0.078 4.078 19 C -0.096 4.096 20 C -0.120 4.120 21 C -0.145 4.145 22 C -0.140 4.140 23 C -0.124 4.124 24 C -0.037 4.037 25 H 0.047 0.953 26 H 0.066 0.934 27 H 0.016 0.984 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.135 0.865 32 H 0.130 0.870 33 H 0.138 0.862 34 H 0.112 0.888 35 H 0.115 0.885 36 H 0.139 0.861 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 6.562 -11.290 8.587 15.629 hybrid contribution 0.174 1.075 0.281 1.125 sum 6.736 -10.215 8.868 15.112 Atomic orbital electron populations 1.20841 0.82199 0.95715 0.99420 1.44153 1.02026 1.00269 1.84478 1.19201 0.98327 0.85061 1.35771 0.91224 1.25071 0.97655 0.98643 0.98074 1.70059 1.17665 1.27333 1.39629 0.86328 0.78600 0.83656 0.77931 1.20928 1.21581 1.20873 1.20015 0.96695 0.88684 0.89438 1.21195 0.92217 0.92579 1.00748 1.20797 0.99221 0.99227 0.94326 1.20678 0.95734 1.00194 0.94564 1.19010 0.96328 1.01644 0.92263 1.20174 0.96038 0.98298 0.94344 1.20194 0.98062 0.99647 0.92650 1.19492 0.97416 1.00638 0.90206 1.20385 0.95519 0.98572 0.95117 1.20355 0.99918 0.99836 0.91935 1.21027 0.96232 0.98577 0.98671 1.20937 0.95637 1.00477 0.96985 1.20850 0.99928 0.99111 0.92559 1.19373 0.94727 0.96828 0.92740 0.95296 0.93419 0.98358 0.93591 0.92714 0.93235 0.86502 0.87049 0.86248 0.88803 0.88541 0.86120 0.86036 0.86095 0.86264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.00 9.01 59.85 0.54 4.54 16 2 N -0.59 -14.68 2.91 -182.50 -0.53 -15.21 16 3 C -0.25 -6.88 9.67 -15.06 -0.15 -7.03 16 4 H 0.07 1.82 7.84 -52.49 -0.41 1.41 16 5 C 0.00 0.13 5.13 -17.43 -0.09 0.04 16 6 N -0.90 -26.38 10.59 55.49 0.59 -25.79 16 7 Si 0.91 21.76 29.57 -169.99 -5.03 16.74 16 8 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 9 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 C 0.18 3.65 5.83 -5.19 -0.03 3.62 16 12 C -0.06 -1.26 5.47 -104.54 -0.57 -1.83 16 13 C -0.12 -2.16 9.68 -39.66 -0.38 -2.54 16 14 C -0.09 -1.63 10.09 -39.18 -0.40 -2.02 16 15 C -0.09 -1.64 6.20 -104.84 -0.65 -2.29 16 16 C -0.09 -1.59 6.30 -104.29 -0.66 -2.25 16 17 C -0.09 -1.67 9.69 -39.67 -0.38 -2.06 16 18 C -0.04 -0.62 6.71 -28.83 -0.19 -0.81 16 19 C -0.10 -1.42 6.30 -104.29 -0.66 -2.07 16 20 C -0.10 -1.26 10.03 -39.67 -0.40 -1.66 16 21 C -0.13 -1.42 10.05 -39.50 -0.40 -1.82 16 22 C -0.12 -1.42 10.02 -39.66 -0.40 -1.82 16 23 C -0.11 -1.45 10.09 -39.18 -0.40 -1.85 16 24 C -0.04 -0.59 6.20 -104.84 -0.65 -1.24 16 25 H 0.03 0.78 7.42 -51.93 -0.39 0.39 16 26 H 0.05 1.25 7.19 -51.93 -0.37 0.88 16 27 H 0.00 -0.04 7.84 -51.93 -0.41 -0.45 16 28 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.05 1.07 7.97 -51.93 -0.41 0.65 16 30 H 0.05 0.91 7.81 -51.93 -0.41 0.50 16 31 H 0.12 1.98 8.06 -52.49 -0.42 1.56 16 32 H 0.11 1.65 8.06 -52.48 -0.42 1.23 16 33 H 0.12 2.24 8.06 -52.48 -0.42 1.81 16 34 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.10 1.39 8.14 -51.93 -0.42 0.96 16 36 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 37 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 38 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 39 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 LS Contribution 327.95 15.07 4.94 4.94 Total: -1.00 -30.79 327.95 -11.22 -42.02 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -5.34 Total: 0.37 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: -5.86 Total: -23.07 kcal Atomic # 7 Polarization: -41.06 SS G_CDS: 0.06 Total: -41.00 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.74 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.79 -11.22 -42.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141740071.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.812 kcal (2) G-P(sol) polarization free energy of solvation -30.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds