Wall clock time and date at job start Tue Mar 31 2020 01:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36941 * 119.99885 * 2 1 4 4 H 1.07999 * 119.99731 * 202.37901 * 3 2 1 5 5 C 1.38808 * 119.99688 * 22.38051 * 3 2 1 6 6 N 1.31618 * 120.00420 * 11.32995 * 5 3 2 7 7 Si 1.86802 * 119.99818 * 191.32558 * 5 3 2 8 8 H 1.48499 * 109.47229 * 59.99868 * 7 5 3 9 9 H 1.48501 * 109.47267 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47033 * 300.00228 * 7 5 3 11 11 C 1.46496 * 120.00208 * 180.02562 * 2 1 3 12 12 C 1.50705 * 109.47182 * 269.99736 * 11 2 1 13 13 C 1.38345 * 119.95466 * 89.99565 * 12 11 2 14 14 C 1.37918 * 120.25597 * 180.25848 * 13 12 11 15 15 C 1.39623 * 119.96233 * 359.49411 * 14 13 12 16 16 C 1.39195 * 119.35524 * 0.52220 * 15 14 13 17 17 C 1.37894 * 120.28872 * 359.73015 * 16 15 14 18 18 C 1.50915 * 107.53979 * 179.76180 * 16 15 14 19 19 C 1.50903 * 106.03834 * 0.02562 * 18 16 15 20 20 C 1.37851 * 132.18610 * 180.02562 * 19 18 16 21 21 C 1.38390 * 120.04271 * 179.97438 * 20 19 18 22 22 C 1.38298 * 120.09604 * 0.02562 * 21 20 19 23 23 C 1.37969 * 120.25594 * 0.02562 * 22 21 20 24 24 C 1.39254 * 107.52673 * 359.97438 * 19 18 16 25 25 H 1.09005 * 109.46640 * 274.20227 * 1 2 3 26 26 H 1.08999 * 109.47226 * 34.19748 * 1 2 3 27 27 H 1.08994 * 109.47052 * 154.20385 * 1 2 3 28 28 H 0.96997 * 120.00215 * 180.02562 * 6 5 3 29 29 H 1.08999 * 109.47379 * 149.99467 * 11 2 1 30 30 H 1.09002 * 109.47255 * 29.99100 * 11 2 1 31 31 H 1.07993 * 119.86679 * 359.97438 * 13 12 11 32 32 H 1.08006 * 120.01901 * 179.74351 * 14 13 12 33 33 H 1.08007 * 119.97969 * 179.97438 * 17 16 15 34 34 H 1.08999 * 110.13774 * 119.14505 * 18 16 15 35 35 H 1.09000 * 110.13526 * 240.86033 * 18 16 15 36 36 H 1.08004 * 119.97590 * 359.95324 * 20 19 18 37 37 H 1.08002 * 119.95421 * 180.02562 * 21 20 19 38 38 H 1.07996 * 119.87514 * 179.97438 * 22 21 20 39 39 H 1.07994 * 120.02144 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1687 1.2211 -0.3561 5 6 1.5340 2.3427 0.4577 6 7 0.3845 2.2687 1.0946 7 14 2.3369 4.0047 0.1700 8 1 2.4915 4.2338 -1.2891 9 1 1.4855 5.0732 0.7519 10 1 3.6724 4.0282 0.8189 11 6 2.1975 -1.2687 -0.0006 12 6 2.4488 -1.7043 1.4201 13 6 1.5259 -2.5033 2.0711 14 6 1.7470 -2.9012 3.3730 15 6 2.9112 -2.5060 4.0348 16 6 3.8336 -1.7017 3.3715 17 6 3.6018 -1.3043 2.0716 18 6 4.9724 -1.4343 4.3250 19 6 4.6252 -2.1586 5.6026 20 6 5.2816 -2.2733 6.8094 21 6 4.7224 -3.0161 7.8344 22 6 3.5046 -3.6452 7.6504 23 6 2.8411 -3.5368 6.4455 24 6 3.3981 -2.7874 5.4080 25 1 -0.3633 0.0753 1.0250 26 1 -0.3633 0.8500 -0.5776 27 1 -0.3633 -0.9252 -0.4472 28 1 -0.0459 3.0771 1.4141 29 1 3.1499 -1.1381 -0.5144 30 1 1.6084 -2.0282 -0.5146 31 1 0.6267 -2.8128 1.5593 32 1 1.0219 -3.5216 3.8789 33 1 4.3207 -0.6799 1.5618 34 1 5.9044 -1.8233 3.9149 35 1 5.0616 -0.3643 4.5122 36 1 6.2331 -1.7833 6.9548 37 1 5.2377 -3.1047 8.7794 38 1 3.0717 -4.2244 8.4525 39 1 1.8902 -4.0293 6.3061 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001141740071.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:32 Heat of formation + Delta-G solvation = 63.003462 kcal Electronic energy + Delta-G solvation = -20603.908823 eV Core-core repulsion = 17669.019958 eV Total energy + Delta-G solvation = -2934.888865 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.132 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.63456 -39.35115 -37.41294 -35.37444 -33.49321 -32.55183 -31.42619 -30.23854 -28.07205 -27.71091 -27.13287 -24.40993 -22.97626 -22.33903 -21.86000 -21.12628 -18.73082 -17.82186 -17.00347 -16.77928 -16.48178 -15.78240 -15.69346 -15.45392 -15.29345 -15.24544 -14.75154 -14.46050 -14.09070 -13.83161 -13.52309 -13.20522 -13.09919 -13.06862 -12.72656 -12.56120 -12.48567 -12.27179 -12.12304 -11.95463 -11.92614 -11.69824 -11.56207 -10.64250 -10.43829 -9.84037 -9.48721 -8.91500 -8.72107 -7.83205 -5.30103 -0.20668 0.45990 0.54769 1.03594 1.45306 1.47515 1.53803 2.49502 2.68236 3.13287 3.31620 3.35729 3.58634 3.84834 3.87855 4.02065 4.12076 4.23015 4.26225 4.38152 4.50862 4.60577 4.62884 4.66437 4.70412 4.81427 4.84327 4.95287 5.00189 5.08902 5.16889 5.22893 5.32274 5.42971 5.56721 5.59649 5.62277 5.63902 5.72542 5.83739 5.85771 6.08567 6.15536 6.32006 7.14362 7.85177 8.29054 9.20170 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.021106 B = 0.004551 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.325255 B = 6151.384202 C = 6770.113646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.606 5.606 3 C -0.258 4.258 4 H 0.074 0.926 5 C -0.051 4.051 6 N -0.938 5.938 7 Si 0.966 3.034 8 H -0.275 1.275 9 H -0.297 1.297 10 H -0.276 1.276 11 C 0.180 3.820 12 C -0.086 4.086 13 C -0.124 4.124 14 C -0.104 4.104 15 C -0.095 4.095 16 C -0.107 4.107 17 C -0.102 4.102 18 C -0.040 4.040 19 C -0.108 4.108 20 C -0.108 4.108 21 C -0.117 4.117 22 C -0.123 4.123 23 C -0.114 4.114 24 C -0.075 4.075 25 H -0.002 1.002 26 H 0.020 0.980 27 H 0.033 0.967 28 H 0.246 0.754 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.129 0.871 32 H 0.136 0.864 33 H 0.116 0.884 34 H 0.114 0.886 35 H 0.098 0.902 36 H 0.146 0.854 37 H 0.158 0.842 38 H 0.153 0.847 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.237 -12.807 10.631 18.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.328 5.328 3 C -0.389 4.389 4 H 0.092 0.908 5 C -0.246 4.246 6 N -0.585 5.585 7 Si 0.794 3.206 8 H -0.201 1.201 9 H -0.223 1.223 10 H -0.202 1.202 11 C 0.054 3.946 12 C -0.090 4.090 13 C -0.143 4.143 14 C -0.122 4.122 15 C -0.095 4.095 16 C -0.107 4.107 17 C -0.121 4.121 18 C -0.076 4.076 19 C -0.109 4.109 20 C -0.125 4.125 21 C -0.134 4.134 22 C -0.140 4.140 23 C -0.132 4.132 24 C -0.075 4.075 25 H 0.016 0.984 26 H 0.039 0.961 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.147 0.853 32 H 0.153 0.847 33 H 0.134 0.866 34 H 0.132 0.868 35 H 0.116 0.884 36 H 0.164 0.836 37 H 0.175 0.825 38 H 0.171 0.829 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 8.116 -12.660 10.634 18.418 hybrid contribution -0.203 1.279 -0.200 1.310 sum 7.913 -11.381 10.434 17.350 Atomic orbital electron populations 1.20554 0.82544 0.96189 0.97354 1.44280 1.02149 1.01249 1.85100 1.19524 0.98376 0.86245 1.34710 0.90846 1.25785 0.98397 1.01833 0.98607 1.70243 1.19261 1.27397 1.41587 0.85366 0.77644 0.79605 0.78013 1.20070 1.22291 1.20217 1.20093 0.96816 0.87388 0.90278 1.21116 0.93303 0.94343 1.00190 1.20996 0.99255 0.99048 0.94953 1.20983 0.96363 1.00417 0.94398 1.19458 0.96014 1.00563 0.93507 1.20536 0.97565 0.98315 0.94302 1.20306 0.98217 0.99962 0.93573 1.19523 0.97096 1.00912 0.90034 1.20554 0.95598 0.98812 0.95888 1.20728 1.00819 0.99888 0.91111 1.21530 0.95808 0.96538 0.99547 1.21360 0.95648 1.00167 0.96842 1.21126 1.00578 0.98681 0.92813 1.19486 0.96034 0.99454 0.92566 0.98354 0.96099 0.94894 0.94458 0.92170 0.91046 0.85319 0.84666 0.86608 0.86828 0.88442 0.83608 0.82474 0.82946 0.85251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.97 9.01 127.77 1.15 10.13 16 2 N -0.61 -30.65 2.91 -731.31 -2.13 -32.77 16 3 C -0.26 -14.22 9.67 84.03 0.81 -13.41 16 4 H 0.07 3.88 7.84 -2.91 -0.02 3.86 16 5 C -0.05 -2.91 5.13 84.86 0.44 -2.47 16 6 N -0.94 -56.73 10.59 21.65 0.23 -56.50 16 7 Si 0.97 45.58 29.57 68.60 2.03 47.61 16 8 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 9 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 10 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 11 C 0.18 7.37 5.83 85.64 0.50 7.87 16 12 C -0.09 -3.48 5.47 -19.81 -0.11 -3.59 16 13 C -0.12 -4.58 9.68 22.22 0.22 -4.37 16 14 C -0.10 -3.59 10.09 22.53 0.23 -3.36 16 15 C -0.09 -3.37 6.20 -20.01 -0.12 -3.50 16 16 C -0.11 -3.89 6.30 -19.65 -0.12 -4.01 16 17 C -0.10 -4.02 9.69 22.21 0.22 -3.81 16 18 C -0.04 -1.16 6.71 29.23 0.20 -0.96 16 19 C -0.11 -3.02 6.30 -19.65 -0.12 -3.15 16 20 C -0.11 -2.30 10.03 22.21 0.22 -2.07 16 21 C -0.12 -2.10 10.05 22.32 0.22 -1.87 16 22 C -0.12 -2.37 10.02 22.22 0.22 -2.15 16 23 C -0.11 -2.85 10.09 22.53 0.23 -2.63 16 24 C -0.08 -2.32 6.20 -20.00 -0.12 -2.45 16 25 H 0.00 -0.11 7.42 -2.38 -0.02 -0.12 16 26 H 0.02 1.12 7.19 -2.39 -0.02 1.10 16 27 H 0.03 1.38 7.84 -2.39 -0.02 1.36 16 28 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 29 H 0.06 2.35 7.97 -2.39 -0.02 2.33 16 30 H 0.07 2.56 7.81 -2.39 -0.02 2.54 16 31 H 0.13 4.31 8.06 -2.91 -0.02 4.29 16 32 H 0.14 3.88 8.06 -2.91 -0.02 3.85 16 33 H 0.12 4.49 8.06 -2.91 -0.02 4.47 16 34 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 35 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 36 H 0.15 2.31 8.06 -2.91 -0.02 2.28 16 37 H 0.16 1.72 8.06 -2.91 -0.02 1.69 16 38 H 0.15 1.96 8.06 -2.91 -0.02 1.93 16 39 H 0.13 2.83 8.06 -2.91 -0.02 2.81 16 Total: -1.00 -68.13 327.95 5.21 -62.92 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: 1.03 Total: 14.53 kcal Atomic # 6 Polarization: -39.83 SS G_CDS: 4.05 Total: -35.79 kcal Atomic # 7 Polarization: -87.37 SS G_CDS: -1.90 Total: -89.27 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -68.13 5.21 -62.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141740071.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.924 kcal (2) G-P(sol) polarization free energy of solvation -68.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds