Wall clock time and date at job start Tue Mar 31 2020 00:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42896 * 109.47207 * 2 1 4 4 C 1.35421 * 116.99888 * 179.97438 * 3 2 1 5 5 N 1.32234 * 119.80378 * 0.02562 * 4 3 2 6 6 C 1.31884 * 121.80257 * 179.97438 * 5 4 3 7 7 C 1.38356 * 121.18462 * 0.02562 * 6 5 4 8 8 C 1.38330 * 119.45920 * 359.97438 * 7 6 5 9 9 C 1.39990 * 118.34907 * 0.02562 * 8 7 6 10 10 C 1.47524 * 120.59541 * 180.02562 * 9 8 7 11 11 O 1.21597 * 119.99992 * 180.02562 * 10 9 8 12 12 N 1.34781 * 120.00358 * 0.02562 * 10 9 8 13 13 C 1.46495 * 120.00302 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.47198 * 180.02562 * 13 12 10 15 15 N 1.46500 * 109.46868 * 179.97438 * 14 13 12 16 16 C 1.36942 * 119.99569 * 180.02562 * 15 14 13 17 17 H 1.07995 * 119.99780 * 359.97438 * 16 15 14 18 18 C 1.38813 * 119.99683 * 180.02562 * 16 15 14 19 19 N 1.31614 * 119.99702 * 180.02562 * 18 16 15 20 20 Si 1.86794 * 120.00193 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47399 * 90.00068 * 20 18 16 22 22 H 1.48504 * 109.47215 * 210.00205 * 20 18 16 23 23 H 1.48501 * 109.47149 * 330.00096 * 20 18 16 24 24 H 1.08999 * 109.46962 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46748 * 299.99869 * 1 2 3 26 26 H 1.08991 * 109.47057 * 59.99945 * 1 2 3 27 27 H 1.09003 * 109.46700 * 239.99653 * 2 1 3 28 28 H 1.09004 * 109.46858 * 120.00264 * 2 1 3 29 29 H 1.07996 * 119.40488 * 179.97438 * 6 5 4 30 30 H 1.08002 * 120.26917 * 180.02562 * 7 6 5 31 31 H 1.08002 * 120.82649 * 180.02562 * 8 7 6 32 32 H 0.97005 * 119.99727 * 359.97438 * 12 10 9 33 33 H 1.09004 * 109.47098 * 300.00153 * 13 12 10 34 34 H 1.09005 * 109.47166 * 59.99913 * 13 12 10 35 35 H 1.08990 * 109.46699 * 300.00278 * 14 13 12 36 36 H 1.09000 * 109.46895 * 60.00274 * 14 13 12 37 37 H 0.96995 * 120.00276 * 0.02562 * 15 14 13 38 38 H 0.97005 * 120.00201 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3490 1.5246 0.0005 5 7 4.1508 0.4732 0.0005 6 6 5.4635 0.6002 0.0005 7 6 6.0626 1.8474 0.0011 8 6 5.2715 2.9821 0.0011 9 6 3.8806 2.8228 0.0011 10 6 2.9901 3.9989 0.0006 11 8 1.7836 3.8480 0.0010 12 7 3.5139 5.2408 -0.0005 13 6 2.6296 6.4088 -0.0016 14 6 3.4717 7.6861 -0.0032 15 7 2.5873 8.8541 -0.0050 16 6 3.1196 10.1158 -0.0072 17 1 4.1912 10.2499 -0.0072 18 6 2.2816 11.2225 -0.0083 19 7 2.7931 12.4352 -0.0109 20 14 0.4281 10.9906 -0.0075 21 1 -0.0627 10.9309 1.3928 22 1 -0.2138 12.1314 -0.7087 23 1 0.0872 9.7252 -0.7058 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 6.0819 -0.2852 0.0009 30 1 7.1391 1.9342 0.0007 31 1 5.7157 3.9665 0.0011 32 1 4.4764 5.3612 -0.0005 33 1 2.0006 6.3875 -0.8916 34 1 2.0004 6.3890 0.8884 35 1 4.1009 7.7076 0.8865 36 1 4.1004 7.7056 -0.8934 37 1 1.6249 8.7337 -0.0045 38 1 2.2076 13.2086 -0.0113 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149630337.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:52:59 Heat of formation + Delta-G solvation = -20.587106 kcal Electronic energy + Delta-G solvation = -20851.686378 eV Core-core repulsion = 17502.323491 eV Total energy + Delta-G solvation = -3349.362887 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.13809 -39.14957 -38.24938 -35.82683 -34.04995 -32.94949 -32.27910 -31.37987 -30.33985 -28.15126 -25.07214 -24.30053 -23.04403 -22.54874 -21.49689 -20.61991 -18.90026 -18.01873 -17.36839 -17.15671 -16.56338 -15.59959 -15.37398 -15.36464 -14.66112 -14.33663 -14.19816 -14.09102 -13.75023 -13.58676 -13.31706 -12.91162 -12.66779 -12.60824 -12.59446 -11.72573 -11.59775 -11.50668 -11.00487 -10.95498 -10.85227 -10.31013 -10.29587 -10.16253 -9.73226 -9.62211 -9.06004 -8.92481 -8.75097 -7.31201 -5.80824 -3.18250 0.39309 0.91315 2.73985 2.81487 3.10809 3.38569 3.42506 3.46131 3.59794 3.92564 4.38309 4.49442 4.57276 4.63717 4.78066 4.79365 4.89596 5.07715 5.14657 5.35952 5.43619 5.44375 5.46686 5.60754 5.63663 5.66144 5.69018 5.86877 5.96709 6.01542 6.37649 6.58107 6.61851 7.00608 7.39425 7.56210 7.92641 8.26765 8.37302 9.15042 9.87413 10.05740 11.37028 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.024724 B = 0.003306 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.217309 B = 8467.040830 C = 9568.206586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.269 6.269 4 C 0.374 3.626 5 N -0.548 5.548 6 C 0.164 3.836 7 C -0.221 4.221 8 C -0.008 4.008 9 C -0.207 4.207 10 C 0.560 3.440 11 O -0.516 6.516 12 N -0.721 5.721 13 C 0.109 3.891 14 C 0.148 3.852 15 N -0.752 5.752 16 C -0.249 4.249 17 H 0.091 0.909 18 C 0.007 3.993 19 N -0.932 5.932 20 Si 0.885 3.115 21 H -0.282 1.282 22 H -0.290 1.290 23 H -0.275 1.275 24 H 0.077 0.923 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.164 0.836 30 H 0.145 0.855 31 H 0.147 0.853 32 H 0.397 0.603 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.033 0.967 36 H 0.033 0.967 37 H 0.364 0.636 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.335 -28.011 0.033 28.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.014 4.014 3 O -0.173 6.173 4 C 0.193 3.807 5 N -0.272 5.272 6 C 0.007 3.993 7 C -0.241 4.241 8 C -0.034 4.034 9 C -0.213 4.213 10 C 0.346 3.654 11 O -0.392 6.392 12 N -0.373 5.373 13 C -0.014 4.014 14 C 0.021 3.979 15 N -0.399 5.399 16 C -0.379 4.379 17 H 0.109 0.891 18 C -0.189 4.189 19 N -0.579 5.579 20 Si 0.714 3.286 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.201 1.201 24 H 0.096 0.904 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.181 0.819 30 H 0.162 0.838 31 H 0.165 0.835 32 H 0.232 0.768 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.197 0.803 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.952 -28.538 0.030 28.811 hybrid contribution -0.258 0.649 -0.007 0.699 sum 3.694 -27.889 0.023 28.133 Atomic orbital electron populations 1.21793 0.92751 1.02539 1.03880 1.22701 0.95292 0.81193 1.02227 1.86546 1.15481 1.29889 1.85377 1.19830 0.84738 0.88430 0.87656 1.67501 1.06656 1.32405 1.20637 1.22665 0.89166 0.97698 0.89797 1.21937 1.01806 0.92896 1.07506 1.21707 0.91171 1.00213 0.90300 1.20087 0.94297 0.92479 1.14462 1.17741 0.87802 0.82477 0.77413 1.90843 1.14164 1.85761 1.48464 1.45758 1.10509 1.05458 1.75619 1.21606 0.93256 0.83955 1.02608 1.20731 0.92992 0.84942 0.99271 1.42532 1.03985 1.02028 1.91343 1.19006 0.94020 0.81066 1.43766 0.89086 1.24670 0.97601 0.95001 1.01634 1.69699 1.34143 0.96996 1.57106 0.86544 0.86904 0.77150 0.77958 1.20894 1.21580 1.20130 0.90445 0.91432 0.91427 0.91650 0.91649 0.81885 0.83763 0.83549 0.76773 0.91212 0.91196 0.94885 0.94937 0.80349 0.92928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 10.28 37.16 0.38 -0.95 16 2 C 0.06 0.63 6.03 37.16 0.22 0.86 16 3 O -0.27 -3.81 8.22 -39.73 -0.33 -4.13 16 4 C 0.37 4.87 7.51 -16.61 -0.12 4.75 16 5 N -0.55 -5.94 9.21 -12.98 -0.12 -6.06 16 6 C 0.16 1.24 11.17 -17.49 -0.20 1.05 16 7 C -0.22 -1.48 10.09 -39.50 -0.40 -1.88 16 8 C -0.01 -0.07 9.64 -38.89 -0.37 -0.44 16 9 C -0.21 -2.57 5.90 -104.69 -0.62 -3.18 16 10 C 0.56 8.48 7.77 -12.47 -0.10 8.39 16 11 O -0.52 -9.81 15.19 -16.49 -0.25 -10.06 16 12 N -0.72 -9.70 5.51 -61.35 -0.34 -10.04 16 13 C 0.11 1.79 5.79 -4.04 -0.02 1.77 16 14 C 0.15 2.75 6.37 -4.04 -0.03 2.73 16 15 N -0.75 -17.92 5.41 -59.91 -0.32 -18.24 16 16 C -0.25 -7.04 10.47 -15.06 -0.16 -7.19 16 17 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 18 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 19 N -0.93 -29.22 13.97 55.49 0.78 -28.45 16 20 Si 0.88 22.26 27.73 -169.99 -4.71 17.55 16 21 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 23 H -0.28 -6.57 6.52 56.52 0.37 -6.20 16 24 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 28 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 29 H 0.16 0.66 8.06 -52.49 -0.42 0.24 16 30 H 0.14 0.53 8.06 -52.49 -0.42 0.10 16 31 H 0.15 0.85 6.52 -52.49 -0.34 0.51 16 32 H 0.40 4.05 6.57 -40.82 -0.27 3.78 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.36 8.54 5.53 -40.82 -0.23 8.31 16 38 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 LS Contribution 326.80 15.07 4.92 4.92 Total: -1.00 -35.91 326.80 -6.95 -42.86 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -5.07 Total: 5.67 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: -1.50 Total: 5.99 kcal Atomic # 7 Polarization: -62.78 SS G_CDS: -0.01 Total: -62.79 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: -0.58 Total: -14.20 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.71 Total: 17.55 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -35.91 -6.95 -42.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149630337.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.274 kcal (2) G-P(sol) polarization free energy of solvation -35.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds