Wall clock time and date at job start Tue Mar 31 2020 00:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42896 * 109.47207 * 2 1 4 4 C 1.35421 * 116.99888 * 179.97438 * 3 2 1 5 5 N 1.32234 * 119.80378 * 0.02562 * 4 3 2 6 6 C 1.31884 * 121.80257 * 179.97438 * 5 4 3 7 7 C 1.38356 * 121.18462 * 0.02562 * 6 5 4 8 8 C 1.38330 * 119.45920 * 359.97438 * 7 6 5 9 9 C 1.39990 * 118.34907 * 0.02562 * 8 7 6 10 10 C 1.47524 * 120.59541 * 180.02562 * 9 8 7 11 11 O 1.21597 * 119.99992 * 180.02562 * 10 9 8 12 12 N 1.34781 * 120.00358 * 0.02562 * 10 9 8 13 13 C 1.46495 * 120.00302 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.47198 * 180.02562 * 13 12 10 15 15 N 1.46500 * 109.46868 * 179.97438 * 14 13 12 16 16 C 1.36942 * 119.99569 * 180.02562 * 15 14 13 17 17 H 1.07995 * 119.99780 * 359.97438 * 16 15 14 18 18 C 1.38813 * 119.99683 * 180.02562 * 16 15 14 19 19 N 1.31614 * 119.99702 * 180.02562 * 18 16 15 20 20 Si 1.86794 * 120.00193 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.47399 * 90.00068 * 20 18 16 22 22 H 1.48504 * 109.47215 * 210.00205 * 20 18 16 23 23 H 1.48501 * 109.47149 * 330.00096 * 20 18 16 24 24 H 1.08999 * 109.46962 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46748 * 299.99869 * 1 2 3 26 26 H 1.08991 * 109.47057 * 59.99945 * 1 2 3 27 27 H 1.09003 * 109.46700 * 239.99653 * 2 1 3 28 28 H 1.09004 * 109.46858 * 120.00264 * 2 1 3 29 29 H 1.07996 * 119.40488 * 179.97438 * 6 5 4 30 30 H 1.08002 * 120.26917 * 180.02562 * 7 6 5 31 31 H 1.08002 * 120.82649 * 180.02562 * 8 7 6 32 32 H 0.97005 * 119.99727 * 359.97438 * 12 10 9 33 33 H 1.09004 * 109.47098 * 300.00153 * 13 12 10 34 34 H 1.09005 * 109.47166 * 59.99913 * 13 12 10 35 35 H 1.08990 * 109.46699 * 300.00278 * 14 13 12 36 36 H 1.09000 * 109.46895 * 60.00274 * 14 13 12 37 37 H 0.96995 * 120.00276 * 0.02562 * 15 14 13 38 38 H 0.97005 * 120.00201 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3490 1.5246 0.0005 5 7 4.1508 0.4732 0.0005 6 6 5.4635 0.6002 0.0005 7 6 6.0626 1.8474 0.0011 8 6 5.2715 2.9821 0.0011 9 6 3.8806 2.8228 0.0011 10 6 2.9901 3.9989 0.0006 11 8 1.7836 3.8480 0.0010 12 7 3.5139 5.2408 -0.0005 13 6 2.6296 6.4088 -0.0016 14 6 3.4717 7.6861 -0.0032 15 7 2.5873 8.8541 -0.0050 16 6 3.1196 10.1158 -0.0072 17 1 4.1912 10.2499 -0.0072 18 6 2.2816 11.2225 -0.0083 19 7 2.7931 12.4352 -0.0109 20 14 0.4281 10.9906 -0.0075 21 1 -0.0627 10.9309 1.3928 22 1 -0.2138 12.1314 -0.7087 23 1 0.0872 9.7252 -0.7058 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 6.0819 -0.2852 0.0009 30 1 7.1391 1.9342 0.0007 31 1 5.7157 3.9665 0.0011 32 1 4.4764 5.3612 -0.0005 33 1 2.0006 6.3875 -0.8916 34 1 2.0004 6.3890 0.8884 35 1 4.1009 7.7076 0.8865 36 1 4.1004 7.7056 -0.8934 37 1 1.6249 8.7337 -0.0045 38 1 2.2076 13.2086 -0.0113 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149630337.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:52:58 Heat of formation + Delta-G solvation = -48.401969 kcal Electronic energy + Delta-G solvation = -20852.892521 eV Core-core repulsion = 17502.323491 eV Total energy + Delta-G solvation = -3350.569030 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.95736 -40.26883 -39.04376 -37.43876 -35.59048 -33.97241 -33.22359 -33.00296 -31.16008 -29.69731 -26.07838 -25.37451 -24.42391 -23.32110 -23.09069 -21.72859 -19.98712 -19.57038 -18.57465 -18.02407 -17.41105 -16.90610 -16.62958 -16.31129 -16.04801 -15.59019 -15.41687 -15.37241 -14.91249 -14.70589 -14.69287 -14.11532 -13.55797 -13.42811 -13.35519 -13.31811 -13.20717 -12.72339 -12.61736 -12.48019 -12.08738 -11.83032 -11.76079 -11.26285 -11.05151 -11.03684 -10.65287 -10.20584 -9.54908 -9.36415 -8.05371 -5.40493 -0.35989 0.23599 1.39571 1.40725 1.47955 1.83110 1.95171 2.02315 2.46738 2.79305 3.23342 3.26712 3.62504 3.75072 3.79550 3.98227 3.98375 4.03747 4.13012 4.19315 4.23126 4.38503 4.48695 4.56582 4.79199 4.88184 4.89278 4.99581 5.08610 5.09404 5.16931 5.31758 5.44280 5.72663 6.17731 6.22607 6.46795 6.74004 7.03101 7.17226 7.77874 7.95195 9.15427 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.024724 B = 0.003306 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.217309 B = 8467.040830 C = 9568.206586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.059 3.941 3 O -0.302 6.302 4 C 0.349 3.651 5 N -0.561 5.561 6 C 0.164 3.836 7 C -0.205 4.205 8 C -0.003 4.003 9 C -0.236 4.236 10 C 0.559 3.441 11 O -0.565 6.565 12 N -0.707 5.707 13 C 0.124 3.876 14 C 0.151 3.849 15 N -0.760 5.760 16 C -0.237 4.237 17 H 0.066 0.934 18 C -0.059 4.059 19 N -0.980 5.980 20 Si 0.950 3.050 21 H -0.278 1.278 22 H -0.293 1.293 23 H -0.255 1.255 24 H 0.106 0.894 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.203 0.797 30 H 0.186 0.814 31 H 0.174 0.826 32 H 0.415 0.585 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.045 0.955 36 H 0.044 0.956 37 H 0.366 0.634 38 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.764 -30.286 0.021 31.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.016 4.016 3 O -0.208 6.208 4 C 0.170 3.830 5 N -0.286 5.286 6 C 0.008 3.992 7 C -0.225 4.225 8 C -0.029 4.029 9 C -0.242 4.242 10 C 0.346 3.654 11 O -0.445 6.445 12 N -0.361 5.361 13 C 0.000 4.000 14 C 0.024 3.976 15 N -0.406 5.406 16 C -0.367 4.367 17 H 0.084 0.916 18 C -0.251 4.251 19 N -0.630 5.630 20 Si 0.778 3.222 21 H -0.204 1.204 22 H -0.220 1.220 23 H -0.180 1.180 24 H 0.125 0.875 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.219 0.781 30 H 0.203 0.797 31 H 0.191 0.809 32 H 0.253 0.747 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.199 0.801 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.435 -30.868 0.017 31.343 hybrid contribution -0.479 1.234 0.001 1.323 sum 4.955 -29.634 0.018 30.046 Atomic orbital electron populations 1.21817 0.91955 1.04061 1.02712 1.22852 0.95957 0.80215 1.02598 1.86507 1.16764 1.31648 1.85834 1.20078 0.84697 0.89313 0.88950 1.67560 1.08071 1.31726 1.21238 1.23477 0.88322 0.99826 0.87618 1.22408 1.03616 0.91633 1.04798 1.22084 0.89499 1.02368 0.88947 1.19996 0.95563 0.90995 1.17626 1.18220 0.87643 0.83332 0.76163 1.90809 1.16373 1.86467 1.50817 1.45526 1.11120 1.04296 1.75154 1.21237 0.93053 0.84000 1.01742 1.20834 0.92665 0.84004 1.00052 1.42570 1.04788 1.01982 1.91267 1.19019 0.93021 0.82955 1.41741 0.91616 1.25459 1.02522 0.94711 1.02407 1.69860 1.35848 0.97951 1.59340 0.85477 0.80932 0.77637 0.78185 1.20381 1.21988 1.17994 0.87532 0.92547 0.92546 0.91185 0.91181 0.78060 0.79652 0.80913 0.74690 0.92251 0.92111 0.93729 0.93842 0.80095 0.93175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 10.28 71.98 0.74 -1.90 16 2 C 0.06 1.23 6.03 71.98 0.43 1.66 16 3 O -0.30 -8.89 8.22 -66.34 -0.55 -9.43 16 4 C 0.35 9.03 7.51 85.13 0.64 9.67 16 5 N -0.56 -11.29 9.21 -308.01 -2.84 -14.13 16 6 C 0.16 1.90 11.17 84.71 0.95 2.84 16 7 C -0.20 -1.84 10.09 22.32 0.23 -1.61 16 8 C 0.00 -0.05 9.64 22.72 0.22 0.17 16 9 C -0.24 -5.63 5.90 -19.91 -0.12 -5.74 16 10 C 0.56 16.86 7.77 86.69 0.67 17.54 16 11 O -0.57 -22.19 15.19 16.80 0.26 -21.93 16 12 N -0.71 -18.14 5.51 -466.26 -2.57 -20.71 16 13 C 0.12 3.95 5.79 86.38 0.50 4.45 16 14 C 0.15 5.36 6.37 86.38 0.55 5.91 16 15 N -0.76 -35.34 5.41 -343.46 -1.86 -37.20 16 16 C -0.24 -13.36 10.47 84.03 0.88 -12.48 16 17 H 0.07 3.98 8.06 -2.91 -0.02 3.95 16 18 C -0.06 -3.47 5.50 84.86 0.47 -3.01 16 19 N -0.98 -62.46 13.97 21.65 0.30 -62.16 16 20 Si 0.95 45.93 27.73 68.60 1.90 47.83 16 21 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 22 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 23 H -0.26 -11.35 6.52 99.48 0.65 -10.70 16 24 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.07 1.34 8.10 -2.39 -0.02 1.32 16 28 H 0.07 1.34 8.10 -2.38 -0.02 1.32 16 29 H 0.20 0.65 8.06 -2.91 -0.02 0.63 16 30 H 0.19 0.18 8.06 -2.91 -0.02 0.15 16 31 H 0.17 1.32 6.52 -2.91 -0.02 1.30 16 32 H 0.41 7.45 6.57 -92.70 -0.61 6.84 16 33 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 35 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.37 16.63 5.53 -92.71 -0.51 16.11 16 38 H 0.26 15.74 8.31 -92.70 -0.77 14.97 16 Total: -1.00 -80.64 326.80 0.72 -79.92 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: -0.09 Total: 20.31 kcal Atomic # 6 Polarization: 11.35 SS G_CDS: 6.16 Total: 17.50 kcal Atomic # 7 Polarization: -127.24 SS G_CDS: -6.96 Total: -134.20 kcal Atomic # 8 Polarization: -31.07 SS G_CDS: -0.29 Total: -31.36 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 1.90 Total: 47.83 kcal Total: -80.64 0.72 -79.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149630337.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.521 kcal (2) G-P(sol) polarization free energy of solvation -80.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds