Wall clock time and date at job start Tue Mar 31 2020 00:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42898 * 109.47486 * 2 1 4 4 C 1.35644 * 117.00188 * 180.02562 * 3 2 1 5 5 C 1.39337 * 120.54450 * 0.26566 * 4 3 2 6 6 C 1.38301 * 118.44111 * 180.28706 * 5 4 3 7 7 C 1.38765 * 119.44780 * 359.73272 * 6 5 4 8 8 N 1.31378 * 121.06168 * 359.97438 * 7 6 5 9 9 C 1.32855 * 121.69799 * 0.02562 * 8 7 6 10 10 C 1.47836 * 119.78059 * 179.97438 * 9 8 7 11 11 O 1.21559 * 119.99616 * 180.02562 * 10 9 8 12 12 N 1.34773 * 120.00044 * 0.02562 * 10 9 8 13 13 C 1.46506 * 119.99969 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.47237 * 179.72043 * 13 12 10 15 15 N 1.46496 * 109.47238 * 179.97438 * 14 13 12 16 16 C 1.36936 * 120.00309 * 180.02562 * 15 14 13 17 17 H 1.07997 * 119.99552 * 0.02562 * 16 15 14 18 18 C 1.38815 * 120.00076 * 180.02562 * 16 15 14 19 19 N 1.31617 * 119.99912 * 179.97438 * 18 16 15 20 20 Si 1.86795 * 120.00122 * 0.02562 * 18 16 15 21 21 H 1.48494 * 109.47731 * 89.99568 * 20 18 16 22 22 H 1.48496 * 109.47015 * 209.99975 * 20 18 16 23 23 H 1.48504 * 109.46998 * 329.99267 * 20 18 16 24 24 H 1.08999 * 109.47135 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47258 * 300.00140 * 1 2 3 26 26 H 1.09000 * 109.47179 * 60.00458 * 1 2 3 27 27 H 1.08998 * 109.47409 * 239.99583 * 2 1 3 28 28 H 1.09006 * 109.47414 * 119.99921 * 2 1 3 29 29 H 1.08001 * 120.77992 * 0.02562 * 5 4 3 30 30 H 1.08003 * 120.27828 * 179.70864 * 6 5 4 31 31 H 1.07995 * 119.47044 * 180.02562 * 7 6 5 32 32 H 0.97005 * 120.00161 * 359.71828 * 12 10 9 33 33 H 1.09001 * 109.46512 * 299.72412 * 13 12 10 34 34 H 1.08998 * 109.47174 * 59.71534 * 13 12 10 35 35 H 1.09000 * 109.46986 * 299.99958 * 14 13 12 36 36 H 1.09002 * 109.46857 * 60.00093 * 14 13 12 37 37 H 0.97005 * 119.99809 * 0.02562 * 15 14 13 38 38 H 0.97000 * 120.00284 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3511 1.5249 -0.0005 5 6 4.2103 0.4280 -0.0066 6 6 5.5738 0.6593 -0.0008 7 6 6.0443 1.9648 0.0051 8 7 5.2154 2.9840 0.0049 9 6 3.8979 2.8124 -0.0006 10 6 3.0041 3.9900 -0.0001 11 8 1.7981 3.8375 -0.0046 12 7 3.5263 5.2324 0.0054 13 6 2.6404 6.3993 0.0053 14 6 3.4809 7.6777 0.0191 15 7 2.5952 8.8445 0.0184 16 6 3.1256 10.1069 0.0291 17 1 4.1971 10.2423 0.0376 18 6 2.2863 11.2125 0.0290 19 7 2.7962 12.4259 0.0397 20 14 0.4331 10.9783 0.0150 21 1 -0.0677 10.9089 1.4112 22 1 -0.2052 12.1228 -0.6836 23 1 0.0990 9.7170 -0.6941 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8206 -0.5793 -0.0114 30 1 6.2667 -0.1691 -0.0006 31 1 7.1089 2.1458 0.0092 32 1 4.4886 5.3540 0.0131 33 1 2.0183 6.3830 -0.8896 34 1 2.0046 6.3729 0.8902 35 1 4.1030 7.6938 0.9140 36 1 4.1167 7.7041 -0.8660 37 1 1.6328 8.7229 0.0104 38 1 2.2097 13.1985 0.0393 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153905326.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:56 Heat of formation + Delta-G solvation = -20.362213 kcal Electronic energy + Delta-G solvation = -20848.447269 eV Core-core repulsion = 17499.094134 eV Total energy + Delta-G solvation = -3349.353135 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.17471 -39.06793 -38.52202 -35.74589 -33.87202 -32.72575 -32.42678 -31.32859 -30.32108 -28.12463 -25.27256 -24.40246 -23.01018 -22.52570 -21.39097 -20.60848 -18.74637 -18.01940 -17.53490 -17.11047 -16.59626 -15.54383 -15.42465 -15.38282 -14.77751 -14.39344 -14.32413 -13.85246 -13.64719 -13.47616 -13.42066 -12.99473 -12.87910 -12.67193 -12.56792 -11.67952 -11.49972 -11.43422 -11.27974 -10.88432 -10.80338 -10.33084 -10.20298 -10.11302 -9.72663 -9.56980 -8.96734 -8.85957 -8.66054 -7.24656 -5.75308 -3.12157 0.38232 0.87389 2.71901 2.73424 3.17235 3.42459 3.46437 3.49580 3.66762 4.00773 4.20225 4.34617 4.52286 4.56492 4.62198 4.67493 4.79132 4.82660 5.11563 5.27572 5.42457 5.46768 5.50797 5.52279 5.56710 5.70676 5.73603 5.77901 6.00158 6.05836 6.50020 6.68252 6.73860 6.89057 7.39264 7.75552 7.99230 8.36071 8.43043 9.21103 9.93379 10.12269 11.42719 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.024531 B = 0.003323 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.122986 B = 8424.432685 C = 9534.474657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.046 3.954 3 O -0.270 6.270 4 C 0.139 3.861 5 C -0.178 4.178 6 C -0.109 4.109 7 C 0.057 3.943 8 N -0.419 5.419 9 C 0.047 3.953 10 C 0.568 3.432 11 O -0.518 6.518 12 N -0.705 5.705 13 C 0.108 3.892 14 C 0.148 3.852 15 N -0.753 5.753 16 C -0.246 4.246 17 H 0.092 0.908 18 C 0.006 3.994 19 N -0.933 5.933 20 Si 0.885 3.115 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.275 1.275 24 H 0.077 0.923 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.145 0.855 30 H 0.143 0.857 31 H 0.166 0.834 32 H 0.410 0.590 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.035 0.965 36 H 0.034 0.966 37 H 0.363 0.637 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.571 -31.549 -0.094 31.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.029 4.029 3 O -0.180 6.180 4 C 0.088 3.912 5 C -0.204 4.204 6 C -0.129 4.129 7 C -0.103 4.103 8 N -0.130 5.130 9 C -0.092 4.092 10 C 0.352 3.648 11 O -0.393 6.393 12 N -0.357 5.357 13 C -0.016 4.016 14 C 0.021 3.979 15 N -0.399 5.399 16 C -0.376 4.376 17 H 0.109 0.891 18 C -0.190 4.190 19 N -0.581 5.581 20 Si 0.715 3.285 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.201 1.201 24 H 0.096 0.904 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.163 0.837 30 H 0.160 0.840 31 H 0.183 0.817 32 H 0.245 0.755 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.196 0.804 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.944 -30.426 -0.095 30.569 hybrid contribution -0.925 -1.168 -0.016 1.490 sum 2.020 -31.594 -0.111 31.659 Atomic orbital electron populations 1.21743 0.92136 1.02633 1.04284 1.22952 0.96825 0.81980 1.01158 1.86445 1.16783 1.28668 1.86140 1.20016 0.84324 0.93718 0.93126 1.21750 0.94186 0.98709 1.05787 1.22210 0.95248 0.98960 0.96460 1.22725 1.00002 0.87786 0.99828 1.67635 1.01733 1.35600 1.08057 1.20755 0.90298 0.91229 1.06935 1.17573 0.87065 0.82434 0.77763 1.90839 1.13674 1.85565 1.49230 1.45700 1.11381 1.04918 1.73729 1.21623 0.93279 0.84203 1.02465 1.20732 0.92945 0.84814 0.99451 1.42539 1.03968 1.02069 1.91344 1.19028 0.94074 0.81077 1.43401 0.89056 1.24667 0.97550 0.95006 1.01797 1.69701 1.34059 0.96979 1.57357 0.86538 0.86992 0.77095 0.77917 1.20940 1.21642 1.20137 0.90401 0.91155 0.91150 0.91945 0.91945 0.83731 0.83953 0.81661 0.75452 0.91258 0.91247 0.94754 0.94803 0.80410 0.92992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 10.28 37.15 0.38 -0.70 16 2 C 0.05 0.36 5.48 37.15 0.20 0.56 16 3 O -0.27 -3.42 8.20 -40.58 -0.33 -3.75 16 4 C 0.14 1.66 6.71 -38.56 -0.26 1.40 16 5 C -0.18 -1.42 9.13 -39.15 -0.36 -1.77 16 6 C -0.11 -0.72 10.10 -39.36 -0.40 -1.11 16 7 C 0.06 0.48 11.17 -17.55 -0.20 0.28 16 8 N -0.42 -4.96 9.54 -9.71 -0.09 -5.05 16 9 C 0.05 0.65 6.76 -82.88 -0.56 0.08 16 10 C 0.57 9.37 7.80 -12.34 -0.10 9.27 16 11 O -0.52 -10.03 15.14 -16.64 -0.25 -10.28 16 12 N -0.71 -11.00 5.54 -61.25 -0.34 -11.34 16 13 C 0.11 1.90 5.79 -4.04 -0.02 1.87 16 14 C 0.15 2.94 6.37 -4.04 -0.03 2.91 16 15 N -0.75 -18.53 5.41 -59.91 -0.32 -18.86 16 16 C -0.25 -7.13 10.47 -15.06 -0.16 -7.29 16 17 H 0.09 2.80 8.06 -52.49 -0.42 2.38 16 18 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 19 N -0.93 -29.74 13.97 55.49 0.78 -28.96 16 20 Si 0.88 22.63 27.74 -169.99 -4.71 17.92 16 21 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 22 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 23 H -0.28 -6.68 6.52 56.52 0.37 -6.32 16 24 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.37 7.68 -51.93 -0.40 -0.03 16 28 H 0.06 0.37 7.71 -51.93 -0.40 -0.03 16 29 H 0.15 0.72 6.46 -52.49 -0.34 0.39 16 30 H 0.14 0.44 8.06 -52.48 -0.42 0.02 16 31 H 0.17 0.86 8.06 -52.49 -0.42 0.44 16 32 H 0.41 5.68 7.80 -40.82 -0.32 5.36 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 35 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.36 8.76 5.53 -40.82 -0.23 8.54 16 38 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 LS Contribution 326.49 15.07 4.92 4.92 Total: -1.00 -35.98 326.49 -7.02 -43.00 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -5.08 Total: 6.83 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: -1.58 Total: 5.58 kcal Atomic # 7 Polarization: -64.23 SS G_CDS: 0.02 Total: -64.22 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: -0.58 Total: -14.03 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -4.71 Total: 17.92 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -35.98 -7.02 -43.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153905326.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.636 kcal (2) G-P(sol) polarization free energy of solvation -35.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds