Wall clock time and date at job start Tue Mar 31 2020 00:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42898 * 109.47486 * 2 1 4 4 C 1.35644 * 117.00188 * 180.02562 * 3 2 1 5 5 C 1.39337 * 120.54450 * 0.26566 * 4 3 2 6 6 C 1.38301 * 118.44111 * 180.28706 * 5 4 3 7 7 C 1.38765 * 119.44780 * 359.73272 * 6 5 4 8 8 N 1.31378 * 121.06168 * 359.97438 * 7 6 5 9 9 C 1.32855 * 121.69799 * 0.02562 * 8 7 6 10 10 C 1.47836 * 119.78059 * 179.97438 * 9 8 7 11 11 O 1.21559 * 119.99616 * 180.02562 * 10 9 8 12 12 N 1.34773 * 120.00044 * 0.02562 * 10 9 8 13 13 C 1.46506 * 119.99969 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.47237 * 179.72043 * 13 12 10 15 15 N 1.46496 * 109.47238 * 179.97438 * 14 13 12 16 16 C 1.36936 * 120.00309 * 180.02562 * 15 14 13 17 17 H 1.07997 * 119.99552 * 0.02562 * 16 15 14 18 18 C 1.38815 * 120.00076 * 180.02562 * 16 15 14 19 19 N 1.31617 * 119.99912 * 179.97438 * 18 16 15 20 20 Si 1.86795 * 120.00122 * 0.02562 * 18 16 15 21 21 H 1.48494 * 109.47731 * 89.99568 * 20 18 16 22 22 H 1.48496 * 109.47015 * 209.99975 * 20 18 16 23 23 H 1.48504 * 109.46998 * 329.99267 * 20 18 16 24 24 H 1.08999 * 109.47135 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47258 * 300.00140 * 1 2 3 26 26 H 1.09000 * 109.47179 * 60.00458 * 1 2 3 27 27 H 1.08998 * 109.47409 * 239.99583 * 2 1 3 28 28 H 1.09006 * 109.47414 * 119.99921 * 2 1 3 29 29 H 1.08001 * 120.77992 * 0.02562 * 5 4 3 30 30 H 1.08003 * 120.27828 * 179.70864 * 6 5 4 31 31 H 1.07995 * 119.47044 * 180.02562 * 7 6 5 32 32 H 0.97005 * 120.00161 * 359.71828 * 12 10 9 33 33 H 1.09001 * 109.46512 * 299.72412 * 13 12 10 34 34 H 1.08998 * 109.47174 * 59.71534 * 13 12 10 35 35 H 1.09000 * 109.46986 * 299.99958 * 14 13 12 36 36 H 1.09002 * 109.46857 * 60.00093 * 14 13 12 37 37 H 0.97005 * 119.99809 * 0.02562 * 15 14 13 38 38 H 0.97000 * 120.00284 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3511 1.5249 -0.0005 5 6 4.2103 0.4280 -0.0066 6 6 5.5738 0.6593 -0.0008 7 6 6.0443 1.9648 0.0051 8 7 5.2154 2.9840 0.0049 9 6 3.8979 2.8124 -0.0006 10 6 3.0041 3.9900 -0.0001 11 8 1.7981 3.8375 -0.0046 12 7 3.5263 5.2324 0.0054 13 6 2.6404 6.3993 0.0053 14 6 3.4809 7.6777 0.0191 15 7 2.5952 8.8445 0.0184 16 6 3.1256 10.1069 0.0291 17 1 4.1971 10.2423 0.0376 18 6 2.2863 11.2125 0.0290 19 7 2.7962 12.4259 0.0397 20 14 0.4331 10.9783 0.0150 21 1 -0.0677 10.9089 1.4112 22 1 -0.2052 12.1228 -0.6836 23 1 0.0990 9.7170 -0.6941 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8206 -0.5793 -0.0114 30 1 6.2667 -0.1691 -0.0006 31 1 7.1089 2.1458 0.0092 32 1 4.4886 5.3540 0.0131 33 1 2.0183 6.3830 -0.8896 34 1 2.0046 6.3729 0.8902 35 1 4.1030 7.6938 0.9140 36 1 4.1167 7.7041 -0.8660 37 1 1.6328 8.7229 0.0104 38 1 2.2097 13.1985 0.0393 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153905326.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:56 Heat of formation + Delta-G solvation = -47.508399 kcal Electronic energy + Delta-G solvation = -20849.624416 eV Core-core repulsion = 17499.094134 eV Total energy + Delta-G solvation = -3350.530282 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.97072 -40.21529 -39.28595 -37.45322 -35.53120 -33.69731 -33.17857 -33.04476 -31.12838 -29.74167 -26.23963 -25.45275 -24.45302 -23.18210 -23.11405 -21.73498 -19.96105 -19.41307 -18.76275 -17.97748 -17.30959 -16.93750 -16.65555 -16.37935 -16.15812 -15.60517 -15.49556 -15.36921 -14.93127 -14.61005 -14.54973 -14.27947 -13.59606 -13.50493 -13.45579 -13.25503 -13.20251 -12.72208 -12.62473 -12.29959 -12.09610 -11.85478 -11.83108 -11.35679 -11.04521 -10.83844 -10.64426 -10.18875 -9.50036 -9.37838 -8.05699 -5.41384 -0.37662 0.22327 1.38946 1.40944 1.48262 1.72577 1.97754 2.09706 2.46617 2.81698 3.16533 3.25781 3.55609 3.69726 3.79247 3.93920 3.99543 4.01478 4.13347 4.16812 4.17721 4.32405 4.46123 4.53333 4.76708 4.88829 4.89341 4.98754 5.00555 5.06562 5.20889 5.34258 5.44905 5.71578 6.17153 6.23463 6.41156 6.80531 7.02014 7.16060 7.75935 7.95143 9.15227 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.024531 B = 0.003323 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.122986 B = 8424.432685 C = 9534.474657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.037 3.963 3 O -0.307 6.307 4 C 0.126 3.874 5 C -0.172 4.172 6 C -0.085 4.085 7 C 0.053 3.947 8 N -0.441 5.441 9 C 0.003 3.997 10 C 0.563 3.437 11 O -0.558 6.558 12 N -0.700 5.700 13 C 0.124 3.876 14 C 0.152 3.848 15 N -0.758 5.758 16 C -0.239 4.239 17 H 0.063 0.937 18 C -0.059 4.059 19 N -0.980 5.980 20 Si 0.953 3.047 21 H -0.276 1.276 22 H -0.291 1.291 23 H -0.255 1.255 24 H 0.109 0.891 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.179 0.821 30 H 0.190 0.810 31 H 0.198 0.802 32 H 0.418 0.582 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.041 0.959 36 H 0.040 0.960 37 H 0.367 0.633 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.235 -35.309 -0.123 35.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.037 4.037 3 O -0.219 6.219 4 C 0.074 3.926 5 C -0.198 4.198 6 C -0.104 4.104 7 C -0.109 4.109 8 N -0.153 5.153 9 C -0.133 4.133 10 C 0.350 3.650 11 O -0.436 6.436 12 N -0.353 5.353 13 C -0.001 4.001 14 C 0.025 3.975 15 N -0.404 5.404 16 C -0.370 4.370 17 H 0.081 0.919 18 C -0.251 4.251 19 N -0.630 5.630 20 Si 0.780 3.220 21 H -0.202 1.202 22 H -0.218 1.218 23 H -0.180 1.180 24 H 0.127 0.873 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.102 0.898 28 H 0.102 0.898 29 H 0.196 0.804 30 H 0.208 0.792 31 H 0.214 0.786 32 H 0.255 0.745 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.200 0.800 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.621 -34.231 -0.125 34.422 hybrid contribution -0.934 -0.161 -0.002 0.948 sum 2.687 -34.391 -0.127 34.497 Atomic orbital electron populations 1.21793 0.92323 1.04096 1.02595 1.23269 0.96796 0.80490 1.03161 1.86402 1.17614 1.31499 1.86349 1.20239 0.84686 0.94205 0.93424 1.22175 0.94329 0.98967 1.04323 1.22756 0.95361 0.99555 0.92738 1.23431 1.01012 0.88066 0.98399 1.67548 1.01226 1.37521 1.09010 1.20324 0.90866 0.90721 1.11412 1.18131 0.87189 0.83209 0.76492 1.90794 1.15445 1.86237 1.51139 1.45580 1.11481 1.04394 1.73835 1.21275 0.92950 0.83974 1.01888 1.20788 0.92664 0.84240 0.99763 1.42535 1.04738 1.01874 1.91259 1.19017 0.92991 0.83005 1.41996 0.91911 1.25486 1.02766 0.94614 1.02235 1.69868 1.35930 0.97975 1.59233 0.85434 0.80579 0.77693 0.78277 1.20244 1.21779 1.17956 0.87296 0.92836 0.92832 0.89791 0.89798 0.80380 0.79242 0.78550 0.74501 0.91933 0.91819 0.94149 0.94247 0.79975 0.93108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 10.28 71.98 0.74 -1.32 16 2 C 0.04 0.51 5.48 71.98 0.39 0.90 16 3 O -0.31 -7.74 8.20 -68.60 -0.56 -8.30 16 4 C 0.13 2.86 6.71 22.93 0.15 3.01 16 5 C -0.17 -2.11 9.13 22.55 0.21 -1.90 16 6 C -0.08 -0.71 10.10 22.41 0.23 -0.48 16 7 C 0.05 0.71 11.17 84.89 0.95 1.66 16 8 N -0.44 -9.94 9.54 -184.63 -1.76 -11.70 16 9 C 0.00 0.08 6.76 41.93 0.28 0.36 16 10 C 0.56 19.19 7.80 86.78 0.68 19.87 16 11 O -0.56 -22.58 15.14 17.09 0.26 -22.32 16 12 N -0.70 -22.27 5.54 -465.97 -2.58 -24.85 16 13 C 0.12 4.38 5.79 86.38 0.50 4.88 16 14 C 0.15 6.02 6.37 86.38 0.55 6.57 16 15 N -0.76 -37.17 5.41 -343.46 -1.86 -39.02 16 16 C -0.24 -14.06 10.47 84.03 0.88 -13.18 16 17 H 0.06 3.97 8.06 -2.91 -0.02 3.95 16 18 C -0.06 -3.57 5.50 84.86 0.47 -3.10 16 19 N -0.98 -63.77 13.97 21.65 0.30 -63.46 16 20 Si 0.95 46.90 27.74 68.60 1.90 48.80 16 21 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 22 H -0.29 -14.32 7.11 99.48 0.71 -13.62 16 23 H -0.25 -11.55 6.52 99.48 0.65 -10.90 16 24 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 26 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.08 0.76 7.68 -2.39 -0.02 0.74 16 28 H 0.08 0.76 7.71 -2.38 -0.02 0.74 16 29 H 0.18 0.88 6.46 -2.91 -0.02 0.87 16 30 H 0.19 -0.16 8.06 -2.91 -0.02 -0.18 16 31 H 0.20 1.22 8.06 -2.91 -0.02 1.20 16 32 H 0.42 11.72 7.80 -92.70 -0.72 10.99 16 33 H 0.06 2.30 8.14 -2.39 -0.02 2.29 16 34 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.37 17.36 5.53 -92.70 -0.51 16.85 16 38 H 0.26 16.05 8.31 -92.71 -0.77 15.28 16 Total: -1.00 -81.61 326.49 1.52 -80.09 By element: Atomic # 1 Polarization: 23.72 SS G_CDS: -0.21 Total: 23.51 kcal Atomic # 6 Polarization: 11.24 SS G_CDS: 6.03 Total: 17.27 kcal Atomic # 7 Polarization: -133.14 SS G_CDS: -5.90 Total: -139.04 kcal Atomic # 8 Polarization: -30.32 SS G_CDS: -0.30 Total: -30.62 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 1.90 Total: 48.80 kcal Total: -81.61 1.52 -80.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153905326.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.582 kcal (2) G-P(sol) polarization free energy of solvation -81.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds