Wall clock time and date at job start Tue Mar 31 2020 01:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45207 * 109.47139 * 2 1 4 4 C 1.34227 * 116.99982 * 180.02562 * 3 2 1 5 5 O 1.20827 * 120.00097 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00183 * 180.02562 * 4 3 2 7 7 N 1.46497 * 109.47393 * 180.02562 * 6 4 3 8 8 C 1.46507 * 119.99896 * 270.00186 * 7 6 4 9 9 C 1.50694 * 109.46918 * 269.99691 * 8 7 6 10 10 H 1.08008 * 120.00240 * 0.02562 * 9 8 7 11 11 C 1.37879 * 120.00213 * 179.97438 * 9 8 7 12 12 N 1.31520 * 119.99578 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 120.00189 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47400 * 90.00380 * 13 11 9 15 15 H 1.48503 * 109.46952 * 209.99974 * 13 11 9 16 16 H 1.48501 * 109.47489 * 329.99701 * 13 11 9 17 17 C 1.39314 * 120.00101 * 89.99988 * 7 6 4 18 18 C 1.39087 * 119.62358 * 4.99927 * 17 7 6 19 19 C 1.38285 * 119.16932 * 179.97438 * 18 17 7 20 20 C 1.39417 * 118.44666 * 0.02562 * 19 18 17 21 21 N 1.40043 * 120.40612 * 180.02562 * 20 19 18 22 22 C 1.38627 * 119.18282 * 359.97438 * 20 19 18 23 23 N 1.31997 * 120.75680 * 0.03217 * 22 20 19 24 24 H 1.09004 * 109.47107 * 300.00015 * 1 2 3 25 25 H 1.08996 * 109.47157 * 59.99497 * 1 2 3 26 26 H 1.09002 * 109.47080 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47268 * 240.00451 * 2 1 3 28 28 H 1.09000 * 109.47644 * 119.99944 * 2 1 3 29 29 H 1.08997 * 109.46739 * 59.99691 * 6 4 3 30 30 H 1.08996 * 109.46781 * 299.99922 * 6 4 3 31 31 H 1.08997 * 109.46832 * 30.00121 * 8 7 6 32 32 H 1.09005 * 109.46857 * 149.99911 * 8 7 6 33 33 H 0.96999 * 119.99489 * 180.02562 * 12 11 9 34 34 H 1.07998 * 120.41560 * 0.25202 * 18 17 7 35 35 H 1.08001 * 120.77431 * 180.02562 * 19 18 17 36 36 H 0.97001 * 119.99864 * 359.97438 * 21 20 19 37 37 H 0.96996 * 119.99730 * 179.97438 * 21 20 19 38 38 H 1.07998 * 119.62657 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0015 6 6 3.9207 2.9374 0.0000 7 7 5.3837 2.8608 -0.0014 8 6 6.1163 2.8214 1.2668 9 6 6.4419 4.2268 1.7025 10 1 6.1336 5.0655 1.0958 11 6 7.1325 4.4421 2.8763 12 7 7.5076 3.4209 3.6153 13 14 7.5355 6.1841 3.4168 14 1 6.4319 6.7084 4.2609 15 1 8.7978 6.1802 4.1990 16 1 7.6973 7.0488 2.2204 17 6 6.0783 2.8253 -1.2085 18 6 5.3843 2.9680 -2.4054 19 6 6.0832 2.9318 -3.5981 20 6 7.4650 2.7519 -3.5530 21 7 8.2133 2.7095 -4.7359 22 6 8.0892 2.6167 -2.3226 23 7 7.3906 2.6560 -1.2033 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.5852 3.4690 0.8904 30 1 3.5844 3.4700 -0.8895 31 1 5.5018 2.3385 2.0265 32 1 7.0405 2.2585 1.1351 33 1 7.9931 3.5724 4.4413 34 1 4.3137 3.1098 -2.4031 35 1 5.5706 3.0403 -4.5425 36 1 7.7704 2.8051 -5.5936 37 1 9.1744 2.5844 -4.6976 38 1 9.1593 2.4774 -2.2792 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157151002.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:29 Heat of formation + Delta-G solvation = -32.358027 kcal Electronic energy + Delta-G solvation = -21685.769336 eV Core-core repulsion = 18335.896023 eV Total energy + Delta-G solvation = -3349.873313 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.21979 -39.49666 -36.76328 -35.70687 -33.86811 -32.60899 -31.70979 -31.34820 -28.68537 -28.10384 -25.49631 -23.58132 -23.06069 -22.25852 -21.27219 -20.03932 -17.50944 -17.08313 -16.95368 -16.35512 -16.33386 -16.20827 -15.48669 -14.91387 -14.40586 -14.21288 -13.85799 -13.69991 -13.33861 -13.00701 -12.80357 -12.61018 -12.29597 -12.00479 -11.86913 -11.55352 -11.42794 -11.15119 -11.06542 -10.76214 -10.49261 -10.37459 -10.18993 -10.02935 -9.56802 -9.12157 -8.63940 -8.34903 -8.19322 -6.34298 -5.89876 -4.00214 1.83619 2.18188 2.61505 2.89051 3.34098 3.40752 3.44992 3.86948 4.23481 4.49433 4.63353 4.92235 4.94745 5.08419 5.14713 5.27543 5.28975 5.37550 5.43866 5.58069 5.65557 5.73388 5.74904 5.84674 5.91055 6.16672 6.39970 6.49687 6.69494 6.81776 7.18378 7.60852 7.73060 7.92398 7.99824 8.03909 8.19055 8.35092 8.36806 8.97516 9.09442 9.63783 11.11969 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.009523 B = 0.007115 C = 0.004405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2939.655445 B = 3934.227023 C = 6355.475780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.060 3.940 3 O -0.366 6.366 4 C 0.433 3.567 5 O -0.492 6.492 6 C 0.142 3.858 7 N -0.580 5.580 8 C 0.261 3.739 9 C -0.523 4.523 10 H 0.057 0.943 11 C 0.061 3.939 12 N -0.894 5.894 13 Si 0.895 3.105 14 H -0.281 1.281 15 H -0.287 1.287 16 H -0.275 1.275 17 C 0.383 3.617 18 C -0.214 4.214 19 C -0.109 4.109 20 C 0.083 3.917 21 N -0.886 5.886 22 C 0.085 3.915 23 N -0.478 5.478 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.075 0.925 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.124 0.876 30 H 0.106 0.894 31 H 0.023 0.977 32 H 0.052 0.948 33 H 0.262 0.738 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.390 0.610 37 H 0.393 0.607 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.106 -3.095 -13.361 16.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.014 4.014 3 O -0.283 6.283 4 C 0.272 3.728 5 O -0.377 6.377 6 C 0.014 3.986 7 N -0.292 5.292 8 C 0.142 3.858 9 C -0.562 4.562 10 H 0.075 0.925 11 C -0.141 4.141 12 N -0.534 5.534 13 Si 0.723 3.277 14 H -0.208 1.208 15 H -0.212 1.212 16 H -0.200 1.200 17 C 0.148 3.852 18 C -0.240 4.240 19 C -0.140 4.140 20 C -0.022 4.022 21 N -0.430 5.430 22 C -0.079 4.079 23 N -0.193 5.193 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.142 0.858 30 H 0.124 0.876 31 H 0.041 0.959 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.217 0.783 37 H 0.220 0.780 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -8.486 -3.555 -12.104 15.204 hybrid contribution 0.067 0.760 -0.714 1.045 sum -8.419 -2.795 -12.818 15.588 Atomic orbital electron populations 1.21785 0.92980 1.02594 1.03377 1.22924 0.94994 0.81119 1.02364 1.86522 1.25380 1.31740 1.84649 1.25350 0.80120 0.94668 0.72653 1.90671 1.60234 1.42941 1.43850 1.20800 0.82495 0.89159 1.06116 1.46549 1.01539 1.75990 1.05107 1.19246 0.92398 0.96958 0.77221 1.21515 1.35973 0.92651 1.06049 0.92462 1.24922 0.95685 0.96981 0.96475 1.69956 1.39194 1.29896 1.14316 0.86545 0.77748 0.84828 0.78534 1.20770 1.21242 1.19985 1.18121 0.88263 0.93114 0.85688 1.21165 1.00257 1.10762 0.91813 1.20592 0.92044 1.03587 0.97732 1.18519 0.91693 1.03746 0.88192 1.42068 1.09135 1.87064 1.04711 1.21956 0.99237 1.01086 0.85629 1.67169 1.06651 1.15948 1.29503 0.91487 0.91648 0.90629 0.91667 0.91448 0.85804 0.87589 0.95900 0.93047 0.92861 0.86028 0.86112 0.78295 0.77959 0.83855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 10.29 37.16 0.38 -0.95 16 2 C 0.06 0.75 6.19 37.16 0.23 0.98 16 3 O -0.37 -5.50 10.22 -39.25 -0.40 -5.90 16 4 C 0.43 7.76 8.03 36.01 0.29 8.05 16 5 O -0.49 -10.65 16.18 -18.75 -0.30 -10.95 16 6 C 0.14 2.50 5.85 -5.20 -0.03 2.47 16 7 N -0.58 -12.92 2.07 -176.52 -0.37 -13.28 16 8 C 0.26 7.00 5.23 -5.19 -0.03 6.97 16 9 C -0.52 -14.73 9.39 -34.44 -0.32 -15.05 16 10 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 11 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 12 N -0.89 -26.86 13.29 55.43 0.74 -26.13 16 13 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 14 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 15 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 16 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 17 C 0.38 8.25 7.38 -154.80 -1.14 7.10 16 18 C -0.21 -3.73 9.27 -39.25 -0.36 -4.10 16 19 C -0.11 -1.66 10.04 -39.13 -0.39 -2.06 16 20 C 0.08 1.28 6.79 -83.52 -0.57 0.71 16 21 N -0.89 -9.69 9.11 32.53 0.30 -9.40 16 22 C 0.08 1.55 11.05 -17.34 -0.19 1.35 16 23 N -0.48 -10.81 9.07 -12.23 -0.11 -10.92 16 24 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 28 H 0.07 0.88 8.13 -51.93 -0.42 0.46 16 29 H 0.12 2.07 8.07 -51.93 -0.42 1.65 16 30 H 0.11 1.50 5.97 -51.93 -0.31 1.19 16 31 H 0.02 0.65 8.07 -51.93 -0.42 0.23 16 32 H 0.05 1.55 7.30 -51.93 -0.38 1.17 16 33 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 34 H 0.12 1.81 6.02 -52.49 -0.32 1.49 16 35 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 36 H 0.39 3.40 8.86 -40.82 -0.36 3.04 16 37 H 0.39 3.61 8.85 -40.82 -0.36 3.25 16 38 H 0.14 2.25 8.06 -52.49 -0.42 1.83 16 LS Contribution 331.82 15.07 5.00 5.00 Total: -1.00 -34.88 331.82 -7.47 -42.36 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -5.07 Total: 5.25 kcal Atomic # 6 Polarization: 9.37 SS G_CDS: -2.23 Total: 7.14 kcal Atomic # 7 Polarization: -60.28 SS G_CDS: 0.56 Total: -59.73 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: -0.70 Total: -16.86 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.88 -7.47 -42.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157151002.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.997 kcal (2) G-P(sol) polarization free energy of solvation -34.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds