Wall clock time and date at job start Tue Mar 31 2020 01:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45207 * 109.47139 * 2 1 4 4 C 1.34227 * 116.99982 * 180.02562 * 3 2 1 5 5 O 1.20827 * 120.00097 * 0.02562 * 4 3 2 6 6 C 1.50701 * 120.00183 * 180.02562 * 4 3 2 7 7 N 1.46497 * 109.47393 * 180.02562 * 6 4 3 8 8 C 1.46507 * 119.99896 * 270.00186 * 7 6 4 9 9 C 1.50694 * 109.46918 * 269.99691 * 8 7 6 10 10 H 1.08008 * 120.00240 * 0.02562 * 9 8 7 11 11 C 1.37879 * 120.00213 * 179.97438 * 9 8 7 12 12 N 1.31520 * 119.99578 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 120.00189 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47400 * 90.00380 * 13 11 9 15 15 H 1.48503 * 109.46952 * 209.99974 * 13 11 9 16 16 H 1.48501 * 109.47489 * 329.99701 * 13 11 9 17 17 C 1.39314 * 120.00101 * 89.99988 * 7 6 4 18 18 C 1.39087 * 119.62358 * 4.99927 * 17 7 6 19 19 C 1.38285 * 119.16932 * 179.97438 * 18 17 7 20 20 C 1.39417 * 118.44666 * 0.02562 * 19 18 17 21 21 N 1.40043 * 120.40612 * 180.02562 * 20 19 18 22 22 C 1.38627 * 119.18282 * 359.97438 * 20 19 18 23 23 N 1.31997 * 120.75680 * 0.03217 * 22 20 19 24 24 H 1.09004 * 109.47107 * 300.00015 * 1 2 3 25 25 H 1.08996 * 109.47157 * 59.99497 * 1 2 3 26 26 H 1.09002 * 109.47080 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47268 * 240.00451 * 2 1 3 28 28 H 1.09000 * 109.47644 * 119.99944 * 2 1 3 29 29 H 1.08997 * 109.46739 * 59.99691 * 6 4 3 30 30 H 1.08996 * 109.46781 * 299.99922 * 6 4 3 31 31 H 1.08997 * 109.46832 * 30.00121 * 8 7 6 32 32 H 1.09005 * 109.46857 * 149.99911 * 8 7 6 33 33 H 0.96999 * 119.99489 * 180.02562 * 12 11 9 34 34 H 1.07998 * 120.41560 * 0.25202 * 18 17 7 35 35 H 1.08001 * 120.77431 * 180.02562 * 19 18 17 36 36 H 0.97001 * 119.99864 * 359.97438 * 21 20 19 37 37 H 0.96996 * 119.99730 * 179.97438 * 21 20 19 38 38 H 1.07998 * 119.62657 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0015 6 6 3.9207 2.9374 0.0000 7 7 5.3837 2.8608 -0.0014 8 6 6.1163 2.8214 1.2668 9 6 6.4419 4.2268 1.7025 10 1 6.1336 5.0655 1.0958 11 6 7.1325 4.4421 2.8763 12 7 7.5076 3.4209 3.6153 13 14 7.5355 6.1841 3.4168 14 1 6.4319 6.7084 4.2609 15 1 8.7978 6.1802 4.1990 16 1 7.6973 7.0488 2.2204 17 6 6.0783 2.8253 -1.2085 18 6 5.3843 2.9680 -2.4054 19 6 6.0832 2.9318 -3.5981 20 6 7.4650 2.7519 -3.5530 21 7 8.2133 2.7095 -4.7359 22 6 8.0892 2.6167 -2.3226 23 7 7.3906 2.6560 -1.2033 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.5852 3.4690 0.8904 30 1 3.5844 3.4700 -0.8895 31 1 5.5018 2.3385 2.0265 32 1 7.0405 2.2585 1.1351 33 1 7.9931 3.5724 4.4413 34 1 4.3137 3.1098 -2.4031 35 1 5.5706 3.0403 -4.5425 36 1 7.7704 2.8051 -5.5936 37 1 9.1744 2.5844 -4.6976 38 1 9.1593 2.4774 -2.2792 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157151002.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:28 Heat of formation + Delta-G solvation = -55.902390 kcal Electronic energy + Delta-G solvation = -21686.790296 eV Core-core repulsion = 18335.896023 eV Total energy + Delta-G solvation = -3350.894273 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.61584 -40.86380 -38.14825 -37.16760 -35.29186 -34.58424 -32.75418 -32.66616 -30.22280 -29.70402 -27.15567 -25.15484 -24.15668 -23.81460 -22.65186 -21.48509 -18.97144 -18.50393 -18.43818 -18.12656 -17.53653 -17.52075 -16.95587 -16.52627 -15.87398 -15.58966 -15.27545 -15.05570 -14.71729 -14.38558 -14.22127 -13.97338 -13.59608 -13.27212 -13.21616 -13.03676 -12.88078 -12.64102 -12.50207 -12.46034 -12.37882 -12.07398 -11.66656 -11.51204 -11.49340 -10.57298 -10.52667 -10.06368 -9.63924 -8.20624 -7.60452 -6.27383 0.50383 0.84096 1.20563 1.40393 1.43179 1.53264 1.62772 2.36255 2.49487 3.15953 3.18100 3.23728 3.77796 3.85302 4.00424 4.10252 4.12882 4.13938 4.25498 4.35254 4.36303 4.51373 4.85405 4.90309 4.95021 4.99829 5.15530 5.16248 5.26461 5.36267 5.46690 5.66334 5.79160 6.14129 6.25391 6.60417 6.71744 6.82173 6.89089 7.19123 7.41295 7.62286 8.94149 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.009523 B = 0.007115 C = 0.004405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2939.655445 B = 3934.227023 C = 6355.475780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.050 3.950 3 O -0.357 6.357 4 C 0.440 3.560 5 O -0.537 6.537 6 C 0.140 3.860 7 N -0.596 5.596 8 C 0.286 3.714 9 C -0.528 4.528 10 H 0.057 0.943 11 C 0.006 3.994 12 N -0.934 5.934 13 Si 0.969 3.031 14 H -0.267 1.267 15 H -0.285 1.285 16 H -0.270 1.270 17 C 0.342 3.658 18 C -0.204 4.204 19 C -0.108 4.108 20 C 0.106 3.894 21 N -0.866 5.866 22 C 0.052 3.948 23 N -0.533 5.533 24 H 0.068 0.932 25 H 0.075 0.925 26 H 0.099 0.901 27 H 0.066 0.934 28 H 0.055 0.945 29 H 0.128 0.872 30 H 0.147 0.853 31 H -0.006 1.006 32 H 0.005 0.995 33 H 0.264 0.736 34 H 0.148 0.852 35 H 0.165 0.835 36 H 0.407 0.593 37 H 0.404 0.596 38 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.621 -1.649 -15.981 19.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.024 4.024 3 O -0.273 6.273 4 C 0.282 3.718 5 O -0.426 6.426 6 C 0.014 3.986 7 N -0.310 5.310 8 C 0.165 3.835 9 C -0.567 4.567 10 H 0.075 0.925 11 C -0.192 4.192 12 N -0.574 5.574 13 Si 0.793 3.207 14 H -0.192 1.192 15 H -0.210 1.210 16 H -0.195 1.195 17 C 0.108 3.892 18 C -0.230 4.230 19 C -0.139 4.139 20 C -0.001 4.001 21 N -0.410 5.410 22 C -0.111 4.111 23 N -0.249 5.249 24 H 0.087 0.913 25 H 0.094 0.906 26 H 0.117 0.883 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.145 0.855 30 H 0.164 0.836 31 H 0.012 0.988 32 H 0.023 0.977 33 H 0.073 0.927 34 H 0.166 0.834 35 H 0.183 0.817 36 H 0.237 0.763 37 H 0.233 0.767 38 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -10.013 -2.103 -14.821 18.010 hybrid contribution 0.552 0.212 -0.079 0.597 sum -9.460 -1.891 -14.900 17.751 Atomic orbital electron populations 1.21802 0.89660 1.04358 1.03977 1.23268 0.97508 0.79667 1.01908 1.86516 1.23536 1.33407 1.83850 1.25396 0.80721 0.94309 0.71392 1.90656 1.61459 1.44289 1.46176 1.21048 0.80143 0.89303 1.08131 1.46286 1.03078 1.77763 1.03899 1.18512 0.90510 0.95467 0.79032 1.21746 1.35796 0.93086 1.06099 0.92468 1.25865 0.95413 1.01440 0.96528 1.70106 1.40055 1.32417 1.14842 0.85402 0.77785 0.79303 0.78170 1.19168 1.21022 1.19494 1.18482 0.88462 0.95788 0.86490 1.21436 1.01526 1.09088 0.90914 1.21066 0.91927 1.02181 0.98689 1.18557 0.92274 1.00798 0.88501 1.42030 1.09694 1.85277 1.04004 1.22206 0.99859 1.02889 0.86101 1.67009 1.08126 1.17506 1.32233 0.91301 0.90580 0.88271 0.91595 0.92639 0.85463 0.83615 0.98843 0.97672 0.92719 0.83400 0.81711 0.76327 0.76693 0.82831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 10.29 71.98 0.74 -1.45 16 2 C 0.05 1.23 6.19 71.98 0.45 1.67 16 3 O -0.36 -10.48 10.22 -51.39 -0.53 -11.00 16 4 C 0.44 15.99 8.03 71.24 0.57 16.57 16 5 O -0.54 -24.22 16.18 21.96 0.36 -23.87 16 6 C 0.14 4.93 5.85 85.63 0.50 5.43 16 7 N -0.60 -27.56 2.07 -712.38 -1.47 -29.04 16 8 C 0.29 16.38 5.23 85.63 0.45 16.83 16 9 C -0.53 -30.85 9.39 25.60 0.24 -30.61 16 10 H 0.06 3.26 7.81 -2.91 -0.02 3.24 16 11 C 0.01 0.33 5.46 84.65 0.46 0.79 16 12 N -0.93 -58.32 13.29 21.45 0.28 -58.03 16 13 Si 0.97 45.52 29.54 68.60 2.03 47.55 16 14 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 15 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 16 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 17 C 0.34 14.98 7.38 132.97 0.98 15.96 16 18 C -0.20 -6.76 9.27 22.48 0.21 -6.55 16 19 C -0.11 -2.93 10.04 22.57 0.23 -2.71 16 20 C 0.11 3.01 6.79 38.21 0.26 3.27 16 21 N -0.87 -15.90 9.11 -51.00 -0.46 -16.36 16 22 C 0.05 1.90 11.05 84.76 0.94 2.84 16 23 N -0.53 -25.11 9.07 -192.61 -1.75 -26.86 16 24 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 25 H 0.08 1.04 8.14 -2.39 -0.02 1.03 16 26 H 0.10 1.10 8.14 -2.39 -0.02 1.09 16 27 H 0.07 1.60 8.13 -2.39 -0.02 1.58 16 28 H 0.06 1.48 8.13 -2.39 -0.02 1.46 16 29 H 0.13 4.31 8.07 -2.39 -0.02 4.29 16 30 H 0.15 3.83 5.97 -2.39 -0.01 3.81 16 31 H -0.01 -0.39 8.07 -2.39 -0.02 -0.41 16 32 H 0.01 0.34 7.30 -2.38 -0.02 0.32 16 33 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 34 H 0.15 3.93 6.02 -2.91 -0.02 3.91 16 35 H 0.17 3.01 8.06 -2.91 -0.02 2.98 16 36 H 0.41 5.24 8.86 -92.71 -0.82 4.42 16 37 H 0.40 6.18 8.85 -92.71 -0.82 5.36 16 38 H 0.15 4.95 8.06 -2.91 -0.02 4.92 16 Total: -1.00 -81.02 331.82 3.93 -77.10 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: -0.55 Total: 18.48 kcal Atomic # 6 Polarization: 16.02 SS G_CDS: 6.02 Total: 22.04 kcal Atomic # 7 Polarization: -126.89 SS G_CDS: -3.40 Total: -130.29 kcal Atomic # 8 Polarization: -34.70 SS G_CDS: -0.17 Total: -34.87 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -81.02 3.93 -77.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157151002.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.193 kcal (2) G-P(sol) polarization free energy of solvation -81.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds